Wall clock time and date at job start Mon Mar 8 2021 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35252 * 116.99644 * 2 1 4 4 O 1.21776 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.40015 * 120.00073 * 180.02562 * 3 2 1 6 6 S 1.55352 * 120.00061 * 180.02562 * 5 3 2 7 7 O 1.52202 * 103.00181 * 73.12852 * 6 5 3 8 8 C 1.76199 * 102.99847 * 179.97438 * 6 5 3 9 9 C 1.38328 * 119.87863 * 90.00163 * 8 6 5 10 10 C 1.38014 * 120.11877 * 180.02562 * 9 8 6 11 11 C 1.39333 * 119.88362 * 359.97433 * 10 9 8 12 12 C 1.48396 * 120.12471 * 180.02562 * 11 10 9 13 13 C 1.39722 * 120.53512 * 179.72029 * 12 11 10 14 14 C 1.38467 * 118.30636 * 179.76124 * 13 12 11 15 15 C 1.38256 * 119.28448 * 0.55888 * 14 13 12 16 16 C 1.50707 * 119.48380 * 179.69746 * 15 14 13 17 17 O 1.42895 * 109.47394 * 329.98265 * 16 15 14 18 18 Si 1.86302 * 109.47279 * 209.97972 * 16 15 14 19 19 H 1.48504 * 109.46877 * 60.00171 * 18 16 15 20 20 H 1.48494 * 109.47185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46921 * 300.00524 * 18 16 15 22 22 N 1.31913 * 121.03407 * 359.68346 * 15 14 13 23 23 C 1.31726 * 121.84982 * 0.02562 * 22 15 14 24 24 C 1.39340 * 119.75441 * 0.28172 * 11 10 9 25 25 C 1.38022 * 119.87629 * 359.48457 * 24 11 10 26 26 H 1.08994 * 109.47484 * 60.00009 * 1 2 3 27 27 H 1.09007 * 109.46643 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47110 * 299.99582 * 1 2 3 29 29 H 1.07995 * 119.99846 * 0.02562 * 5 3 2 30 30 H 1.07991 * 119.93766 * 359.97438 * 9 8 6 31 31 H 1.08006 * 120.06146 * 179.97438 * 10 9 8 32 32 H 1.08001 * 120.84804 * 0.02562 * 13 12 11 33 33 H 1.08006 * 120.35251 * 180.28439 * 14 13 12 34 34 H 1.08999 * 109.46687 * 89.98278 * 16 15 14 35 35 H 0.96699 * 113.99986 * 300.00214 * 17 16 15 36 36 H 1.07999 * 119.69718 * 180.02562 * 23 22 15 37 37 H 1.08005 * 120.06244 * 179.72306 * 24 11 10 38 38 H 1.08006 * 119.93586 * 180.23915 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 8 1.3797 2.2264 0.0005 5 6 3.4412 1.2785 -0.0005 6 16 4.1464 2.6628 0.0001 7 8 3.9189 3.1623 1.4197 8 6 5.8561 2.2366 -0.0002 9 6 6.5247 2.0705 -1.1997 10 6 7.8637 1.7361 -1.2056 11 6 8.5422 1.5664 -0.0006 12 6 9.9821 1.2074 -0.0008 13 6 10.6723 1.0409 1.2026 14 6 12.0136 0.7010 1.1486 15 6 12.6240 0.5504 -0.0827 16 6 14.0853 0.1873 -0.1467 17 8 14.7576 0.7137 0.9991 18 14 14.8368 0.9062 -1.6924 19 1 14.6945 2.3842 -1.6707 20 1 16.2764 0.5479 -1.7557 21 1 14.1380 0.3591 -2.8831 22 7 11.9474 0.7191 -1.2024 23 6 10.6690 1.0370 -1.2009 24 6 7.8624 1.7297 1.2047 25 6 6.5245 2.0688 1.1990 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0294 0.3728 -0.0014 30 1 5.9977 2.2018 -2.1331 31 1 8.3847 1.6062 -2.1428 32 1 10.1714 1.1696 2.1507 33 1 12.5778 0.5596 2.0587 34 1 14.1897 -0.8976 -0.1626 35 1 14.7059 1.6761 1.0778 36 1 10.1488 1.1664 -2.1384 37 1 8.3824 1.5950 2.1417 38 1 5.9977 2.1995 2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15258500_11652898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:45:02 Heat of formation + Delta-G solvation = -177.964151 kcal Electronic energy + Delta-G solvation = -24552.222643 eV Core-core repulsion = 20642.271646 eV Total energy + Delta-G solvation = -3909.950997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60070 -40.68947 -39.82542 -37.77289 -36.92471 -34.59380 -34.07170 -33.09821 -31.83922 -30.98715 -30.59980 -27.80647 -27.21742 -25.20401 -24.10279 -22.90176 -22.36386 -21.90091 -19.24946 -18.67646 -18.11892 -17.83710 -17.48965 -16.96125 -16.86986 -16.75705 -16.36907 -16.19549 -15.71469 -15.29575 -15.24116 -14.83414 -14.69169 -14.61319 -14.49754 -14.11722 -13.94208 -13.87748 -13.64230 -13.29711 -12.68477 -12.60217 -12.53796 -12.34476 -12.13438 -11.94713 -11.88350 -11.46682 -11.33574 -11.01225 -10.88487 -10.61219 -10.51997 -10.22376 -9.91754 -9.41069 -9.12079 -8.01922 -0.63261 0.19777 0.44197 0.59214 1.26719 1.57819 1.66806 1.67743 2.08117 2.20902 2.51567 2.77981 2.94898 3.04473 3.28180 3.39074 3.55630 3.67227 3.82852 3.94504 3.97834 4.05914 4.19629 4.31847 4.34202 4.41657 4.50604 4.55596 4.64848 4.66161 4.75366 4.83317 4.99373 5.05737 5.09643 5.20730 5.31346 5.40012 5.50144 5.55365 5.62798 5.98383 6.06559 6.59630 6.85680 7.56106 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.002155 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.093108 B =12987.221034 C =13144.976328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.397 6.397 3 C 0.518 3.482 4 O -0.642 6.642 5 C -1.044 5.044 6 S 1.500 4.500 7 O -1.004 7.004 8 C -0.441 4.441 9 C -0.047 4.047 10 C -0.121 4.121 11 C -0.029 4.029 12 C -0.101 4.101 13 C -0.072 4.072 14 C -0.145 4.145 15 C 0.081 3.919 16 C -0.069 4.069 17 O -0.544 6.544 18 Si 1.017 2.983 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.264 1.264 22 N -0.495 5.495 23 C 0.115 3.885 24 C -0.131 4.131 25 C -0.085 4.085 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.391 0.609 36 H 0.184 0.816 37 H 0.139 0.861 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.530 -2.529 -7.210 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.316 6.316 3 C 0.385 3.615 4 O -0.549 6.549 5 C -1.170 5.170 6 S 1.706 4.294 7 O -1.000 7.000 8 C -0.538 4.538 9 C -0.066 4.066 10 C -0.139 4.139 11 C -0.030 4.030 12 C -0.103 4.103 13 C -0.097 4.097 14 C -0.164 4.164 15 C -0.056 4.056 16 C -0.180 4.180 17 O -0.350 6.350 18 Si 0.841 3.159 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.188 1.188 22 N -0.206 5.206 23 C -0.042 4.042 24 C -0.150 4.150 25 C -0.104 4.104 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.188 0.812 31 H 0.188 0.812 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.241 0.759 36 H 0.200 0.800 37 H 0.157 0.843 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.849 -1.871 -8.595 25.419 hybrid contribution -1.262 -1.592 3.306 3.881 sum 22.587 -3.463 -5.288 23.455 Atomic orbital electron populations 1.22844 0.78017 1.04119 1.01009 1.86214 1.23153 1.34936 1.87313 1.18216 0.88587 0.80255 0.74473 1.90638 1.68180 1.35814 1.60309 1.26726 0.99726 1.20028 1.70492 1.65483 0.77043 0.83381 1.03526 1.94365 1.85301 1.80593 1.39757 1.28073 1.19445 1.08495 0.97765 1.21244 0.94401 0.94061 0.96926 1.21699 0.94303 0.99579 0.98310 1.18838 0.91885 0.98653 0.93671 1.19823 0.92770 1.02190 0.95504 1.22003 0.94580 0.94572 0.98550 1.21966 0.94471 0.99983 0.99977 1.22120 0.98009 0.96226 0.89255 1.24957 0.87507 1.05283 1.00236 1.86473 1.74974 1.28142 1.45427 0.84618 0.77211 0.78645 0.75438 1.19799 1.19141 1.18828 1.67212 1.09111 1.13316 1.30961 1.23154 0.89322 0.93588 0.98157 1.21360 0.93515 1.01246 0.98830 1.21016 0.95360 0.96510 0.97525 0.92796 0.85519 0.94667 0.88662 0.81239 0.81229 0.83482 0.81929 0.84377 0.75934 0.79957 0.84340 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.44 10.45 113.37 1.19 2.62 16 2 O -0.40 -21.73 10.47 -61.84 -0.65 -22.37 16 3 C 0.52 32.02 7.63 68.25 0.52 32.54 16 4 O -0.64 -41.36 16.06 18.92 0.30 -41.06 16 5 C -1.04 -61.95 8.93 68.25 0.61 -61.34 16 6 S 1.50 77.49 12.78 -56.49 -0.72 76.77 16 7 O -1.00 -67.00 17.06 -148.98 -2.54 -69.54 16 8 C -0.44 -18.74 5.35 22.31 0.12 -18.62 16 9 C -0.05 -1.47 9.74 22.24 0.22 -1.26 16 10 C -0.12 -3.08 9.44 22.48 0.21 -2.87 16 11 C -0.03 -0.82 5.88 -20.04 -0.12 -0.94 16 12 C -0.10 -2.29 5.89 -19.95 -0.12 -2.40 16 13 C -0.07 -1.43 9.54 22.68 0.22 -1.21 16 14 C -0.14 -2.43 9.37 22.33 0.21 -2.22 16 15 C 0.08 1.42 6.07 42.55 0.26 1.68 16 16 C -0.07 -0.91 2.98 71.24 0.21 -0.69 16 17 O -0.54 -6.27 11.84 -148.98 -1.76 -8.04 16 18 Si 1.02 14.24 27.16 68.60 1.86 16.11 16 19 H -0.27 -4.40 7.11 99.48 0.71 -3.70 16 20 H -0.27 -3.77 7.11 99.48 0.71 -3.07 16 21 H -0.26 -4.67 7.11 99.48 0.71 -3.96 16 22 N -0.50 -10.16 8.35 -183.02 -1.53 -11.68 16 23 C 0.12 2.32 10.60 84.97 0.90 3.22 16 24 C -0.13 -4.35 9.44 22.48 0.21 -4.14 16 25 C -0.08 -3.69 9.44 22.24 0.21 -3.48 16 26 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16 27 H 0.13 3.90 8.14 -2.38 -0.02 3.88 16 28 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.09 5.74 7.87 -7.38 -0.06 5.68 16 30 H 0.17 3.96 8.06 -2.92 -0.02 3.93 16 31 H 0.17 2.75 6.24 -2.91 -0.02 2.73 16 32 H 0.15 2.62 6.33 -2.91 -0.02 2.60 16 33 H 0.16 2.06 7.47 -2.91 -0.02 2.03 16 34 H 0.14 1.49 7.96 -2.39 -0.02 1.48 16 35 H 0.39 2.12 8.70 -74.06 -0.64 1.47 16 36 H 0.18 2.73 6.23 -2.91 -0.02 2.71 16 37 H 0.14 3.83 6.28 -2.91 -0.02 3.81 16 38 H 0.09 4.59 7.22 -2.91 -0.02 4.56 16 Total: -1.00 -92.22 342.54 1.01 -91.20 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.20 Total: 27.73 kcal Atomic # 6 Polarization: -63.96 SS G_CDS: 4.85 Total: -59.12 kcal Atomic # 7 Polarization: -10.16 SS G_CDS: -1.53 Total: -11.68 kcal Atomic # 8 Polarization: -136.36 SS G_CDS: -4.65 Total: -141.01 kcal Atomic # 14 Polarization: 14.24 SS G_CDS: 1.86 Total: 16.11 kcal Atomic # 16 Polarization: 77.49 SS G_CDS: -0.72 Total: 76.77 kcal Total: -92.22 1.01 -91.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_11652898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.762 kcal (2) G-P(sol) polarization free energy of solvation -92.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds