Wall clock time and date at job start Mon Mar 8 2021 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47391 * 2 1 4 4 C 1.53006 * 109.47323 * 240.00228 * 2 1 3 5 5 Si 1.86295 * 109.47457 * 119.99895 * 2 1 3 6 6 C 1.86302 * 109.47178 * 300.00290 * 5 2 1 7 7 C 1.86294 * 109.47479 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47052 * 60.00002 * 5 2 1 9 9 C 1.42900 * 114.00406 * 180.02562 * 8 5 2 10 10 C 1.50693 * 109.47165 * 180.02562 * 9 8 5 11 11 C 1.33721 * 122.08057 * 359.97438 * 10 9 8 12 12 S 1.76254 * 108.21886 * 179.76135 * 11 10 9 13 13 C 1.76172 * 89.83670 * 0.33303 * 12 11 10 14 14 C 1.47874 * 125.47348 * 179.97438 * 13 12 11 15 15 C 1.39939 * 120.55426 * 359.69953 * 14 13 12 16 16 C 1.38409 * 118.29366 * 179.97438 * 15 14 13 17 17 C 1.38305 * 119.30085 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.46029 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47152 * 329.99932 * 18 17 16 20 20 Si 1.86293 * 109.47431 * 209.99823 * 18 17 16 21 21 H 1.48499 * 109.47038 * 59.99631 * 20 18 17 22 22 H 1.48499 * 109.47512 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47075 * 299.99766 * 20 18 17 24 24 N 1.31931 * 121.07777 * 0.25020 * 17 16 15 25 25 C 1.31681 * 121.87637 * 359.47907 * 24 17 16 26 26 N 1.30218 * 109.05844 * 359.66633 * 13 12 11 27 27 H 1.08999 * 109.47313 * 300.00074 * 1 2 3 28 28 H 1.09004 * 109.47607 * 59.99941 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47564 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46553 * 300.00072 * 3 2 1 32 32 H 1.08999 * 109.46953 * 59.99705 * 3 2 1 33 33 H 1.09000 * 109.46474 * 300.00275 * 4 2 1 34 34 H 1.09000 * 109.46941 * 59.99912 * 4 2 1 35 35 H 1.08999 * 109.47403 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46993 * 179.97438 * 6 5 2 37 37 H 1.08994 * 109.46632 * 299.99740 * 6 5 2 38 38 H 1.08999 * 109.47243 * 59.99284 * 6 5 2 39 39 H 1.08999 * 109.47333 * 300.00057 * 7 5 2 40 40 H 1.09000 * 109.47527 * 59.99950 * 7 5 2 41 41 H 1.09000 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.08999 * 109.46969 * 59.99675 * 9 8 5 43 43 H 1.09002 * 109.46512 * 300.00081 * 9 8 5 44 44 H 1.08001 * 125.88986 * 0.02563 * 11 10 9 45 45 H 1.08001 * 120.85702 * 359.97438 * 15 14 13 46 46 H 1.07995 * 120.34869 * 180.02562 * 16 15 14 47 47 H 1.09008 * 109.47393 * 89.99326 * 18 17 16 48 48 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 49 49 H 1.08001 * 119.71964 * 180.26654 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8788 1.5207 8 8 1.6074 -2.4159 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4723 -4.5781 2.5485 11 6 0.7076 -4.9637 1.5215 12 16 0.2689 -6.6533 1.7651 13 6 1.1780 -6.6665 3.2741 14 6 1.3224 -7.8273 4.1788 15 6 0.7070 -9.0468 3.8751 16 6 0.8735 -10.1027 4.7544 17 6 1.6351 -9.9204 5.8945 18 6 1.8183 -11.0673 6.8546 19 8 0.6681 -11.9142 6.8101 20 14 2.0339 -10.4031 8.5817 21 1 0.8300 -9.6233 8.9660 22 1 2.2138 -11.5333 9.5280 23 1 3.2292 -9.5231 8.6280 24 7 2.1993 -8.7572 6.1578 25 6 2.0743 -7.7249 5.3499 26 7 1.7079 -5.4919 3.4616 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8930 -0.5141 3.9322 37 1 1.8933 1.0276 3.0422 38 1 0.4400 0.0001 3.0422 39 1 4.3769 -1.3929 0.6307 40 1 4.3777 0.1487 1.5204 41 1 4.3773 -1.3931 2.4105 42 1 1.6638 -2.7112 3.5651 43 1 3.1174 -3.2252 2.6757 44 1 0.4134 -4.3475 0.6848 45 1 0.1172 -9.1613 2.9776 46 1 0.4137 -11.0587 4.5525 47 1 2.7020 -11.6398 6.5725 48 1 0.7167 -12.6751 7.4049 49 1 2.5548 -6.7899 5.5975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15258500_12621894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:36 Heat of formation + Delta-G solvation = -52.454214 kcal Electronic energy + Delta-G solvation = -27590.814882 eV Core-core repulsion = 23767.877580 eV Total energy + Delta-G solvation = -3822.937302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53335 -40.67312 -38.02694 -37.73597 -36.90068 -34.45976 -33.04669 -31.14175 -29.54105 -29.14253 -28.10106 -27.93082 -27.83117 -27.43746 -25.25052 -24.31417 -22.57315 -20.61153 -20.29980 -19.34065 -18.59716 -18.02858 -17.44640 -17.09341 -16.73178 -16.68927 -16.27767 -16.24320 -15.74791 -15.33869 -15.20055 -14.92664 -14.77579 -14.70604 -14.44829 -14.25479 -14.20796 -14.06516 -13.80249 -13.62388 -13.46538 -13.35413 -13.28783 -12.98954 -12.98261 -12.67542 -12.47592 -12.42014 -12.16055 -11.99263 -11.87796 -11.79067 -11.69724 -11.50338 -11.30677 -10.98071 -10.76928 -10.52769 -10.49788 -10.35842 -10.14213 -10.08320 -9.18022 -0.89467 0.18040 0.24567 0.32207 0.67830 1.22065 1.26165 1.58468 1.66722 1.70327 1.77613 1.98965 2.14450 2.30451 2.63173 2.79366 2.89743 3.58738 3.74348 3.75889 3.82508 4.05360 4.05957 4.08347 4.12873 4.16889 4.28830 4.33168 4.41306 4.43135 4.50076 4.63952 4.68559 4.69135 4.69479 4.76266 4.78204 4.79716 4.88958 4.94146 4.96729 5.04472 5.04900 5.06164 5.16143 5.28140 5.32144 5.36477 5.42086 5.50225 5.52653 5.55821 6.44854 6.62320 6.81295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.294 2.706 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.627 6.627 9 C 0.163 3.837 10 C 0.056 3.944 11 C -0.206 4.206 12 S 0.094 5.906 13 C 0.115 3.885 14 C -0.079 4.079 15 C -0.053 4.053 16 C -0.136 4.136 17 C 0.147 3.853 18 C -0.081 4.081 19 O -0.548 6.548 20 Si 0.979 3.021 21 H -0.255 1.255 22 H -0.264 1.264 23 H -0.240 1.240 24 N -0.483 5.483 25 C 0.158 3.842 26 N -0.456 5.456 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.191 0.809 45 H 0.140 0.860 46 H 0.151 0.849 47 H 0.091 0.909 48 H 0.389 0.611 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 -1.377 -0.819 1.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.426 2.574 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.085 3.915 10 C -0.076 4.076 11 C -0.345 4.345 12 S 0.351 5.649 13 C -0.161 4.161 14 C -0.085 4.085 15 C -0.081 4.081 16 C -0.155 4.155 17 C 0.010 3.990 18 C -0.190 4.190 19 O -0.355 6.355 20 Si 0.799 3.201 21 H -0.179 1.179 22 H -0.188 1.188 23 H -0.163 1.163 24 N -0.193 5.193 25 C -0.004 4.004 26 N -0.171 5.171 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.208 0.792 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.109 0.891 48 H 0.237 0.763 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.035 -1.321 0.001 1.322 hybrid contribution 0.076 0.695 -0.946 1.176 sum 0.111 -0.626 -0.945 1.139 Atomic orbital electron populations 1.21514 0.93782 1.01950 1.01878 1.25780 1.00687 1.02697 1.12614 1.21556 1.00826 0.94822 1.02212 1.21515 1.00677 1.00144 0.96784 0.76603 0.63021 0.52739 0.65049 1.27037 1.07076 1.09578 1.17749 1.27038 1.24900 1.04867 1.04632 1.85231 1.79636 1.46252 1.47416 1.20165 0.98022 0.85982 0.87346 1.19848 1.00111 0.96394 0.91246 1.26860 1.05196 0.96910 1.05548 1.85033 1.50223 1.09592 1.20096 1.25392 0.99780 0.94229 0.96662 1.18793 1.02577 0.91111 0.95980 1.21682 0.96093 0.91216 0.99123 1.21756 0.99299 1.00492 0.93981 1.20627 0.92934 0.92057 0.93370 1.24584 0.91552 0.93144 1.09753 1.86366 1.39494 1.41388 1.68218 0.85151 0.82521 0.79945 0.72462 1.17870 1.18819 1.16278 1.67159 1.21043 0.99282 1.31865 1.22909 0.92793 0.96817 0.87843 1.66090 1.22403 0.99695 1.28918 0.92636 0.92767 0.92243 0.92459 0.92462 0.92457 0.92248 0.92761 0.92638 0.91305 0.90590 0.90812 0.90815 0.90590 0.91306 0.90373 0.90376 0.79187 0.84204 0.83085 0.89103 0.76290 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.07 7.85 37.15 0.29 0.36 16 2 C -0.37 0.34 0.53 -90.62 -0.05 0.29 16 3 C -0.14 0.14 7.85 37.16 0.29 0.43 16 4 C -0.13 0.07 7.85 37.16 0.29 0.37 16 5 Si 1.29 -2.08 8.45 -169.99 -1.44 -3.51 16 6 C -0.51 0.53 8.50 101.05 0.86 1.39 16 7 C -0.51 0.54 8.50 101.05 0.86 1.40 16 8 O -0.63 0.22 7.41 -35.23 -0.26 -0.04 16 9 C 0.16 0.00 5.72 36.00 0.21 0.21 16 10 C 0.06 0.11 6.69 -84.40 -0.56 -0.46 16 11 C -0.21 -0.23 10.52 29.15 0.31 0.07 16 12 S 0.09 0.06 22.49 -107.50 -2.42 -2.35 16 13 C 0.11 0.25 7.36 -14.29 -0.11 0.14 16 14 C -0.08 -0.14 5.89 -104.83 -0.62 -0.76 16 15 C -0.05 -0.03 9.73 -38.88 -0.38 -0.40 16 16 C -0.14 -0.10 9.36 -39.49 -0.37 -0.47 16 17 C 0.15 0.27 6.11 -82.53 -0.50 -0.24 16 18 C -0.08 0.03 2.97 36.01 0.11 0.14 16 19 O -0.55 0.61 11.82 -35.23 -0.42 0.19 16 20 Si 0.98 0.49 27.15 -169.99 -4.62 -4.12 16 21 H -0.26 -0.69 7.11 56.52 0.40 -0.29 16 22 H -0.26 0.02 7.11 56.52 0.40 0.42 16 23 H -0.24 -0.49 7.11 56.52 0.40 -0.09 16 24 N -0.48 -1.40 8.33 -9.14 -0.08 -1.48 16 25 C 0.16 0.35 10.85 -17.13 -0.19 0.16 16 26 N -0.46 -1.28 10.14 -7.55 -0.08 -1.36 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 28 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 -0.03 7.97 -51.93 -0.41 -0.45 16 30 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 33 H 0.06 -0.03 7.97 -51.93 -0.41 -0.45 16 34 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 36 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 42 H 0.08 -0.08 7.21 -51.93 -0.37 -0.46 16 43 H 0.08 -0.09 7.21 -51.93 -0.37 -0.46 16 44 H 0.19 -0.04 7.51 -52.49 -0.39 -0.43 16 45 H 0.14 -0.21 7.42 -52.49 -0.39 -0.60 16 46 H 0.15 -0.09 7.47 -52.49 -0.39 -0.48 16 47 H 0.09 -0.22 7.96 -51.92 -0.41 -0.63 16 48 H 0.39 -2.12 8.74 45.56 0.40 -1.72 16 49 H 0.17 0.20 7.83 -52.49 -0.41 -0.21 16 LS Contribution 412.39 15.07 6.21 6.21 Total: 0.00 -5.86 412.39 -9.90 -15.77 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: -7.25 Total: -11.94 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 0.44 Total: 2.64 kcal Atomic # 7 Polarization: -2.69 SS G_CDS: -0.15 Total: -2.84 kcal Atomic # 8 Polarization: 0.83 SS G_CDS: -0.68 Total: 0.15 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -6.05 Total: -7.64 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.42 Total: -2.35 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -5.86 -9.90 -15.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_12621894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.688 kcal (2) G-P(sol) polarization free energy of solvation -5.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds