Wall clock time and date at job start Mon Mar 8 2021 07:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47391 * 2 1 4 4 C 1.53006 * 109.47323 * 240.00228 * 2 1 3 5 5 Si 1.86295 * 109.47457 * 119.99895 * 2 1 3 6 6 C 1.86302 * 109.47178 * 300.00290 * 5 2 1 7 7 C 1.86294 * 109.47479 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47052 * 60.00002 * 5 2 1 9 9 C 1.42900 * 114.00406 * 180.02562 * 8 5 2 10 10 C 1.50693 * 109.47165 * 180.02562 * 9 8 5 11 11 C 1.33721 * 122.08057 * 359.97438 * 10 9 8 12 12 S 1.76254 * 108.21886 * 179.76135 * 11 10 9 13 13 C 1.76172 * 89.83670 * 0.33303 * 12 11 10 14 14 C 1.47874 * 125.47348 * 179.97438 * 13 12 11 15 15 C 1.39939 * 120.55426 * 359.69953 * 14 13 12 16 16 C 1.38409 * 118.29366 * 179.97438 * 15 14 13 17 17 C 1.38305 * 119.30085 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.46029 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47152 * 329.99932 * 18 17 16 20 20 Si 1.86293 * 109.47431 * 209.99823 * 18 17 16 21 21 H 1.48499 * 109.47038 * 59.99631 * 20 18 17 22 22 H 1.48499 * 109.47512 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47075 * 299.99766 * 20 18 17 24 24 N 1.31931 * 121.07777 * 0.25020 * 17 16 15 25 25 C 1.31681 * 121.87637 * 359.47907 * 24 17 16 26 26 N 1.30218 * 109.05844 * 359.66633 * 13 12 11 27 27 H 1.08999 * 109.47313 * 300.00074 * 1 2 3 28 28 H 1.09004 * 109.47607 * 59.99941 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47564 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46553 * 300.00072 * 3 2 1 32 32 H 1.08999 * 109.46953 * 59.99705 * 3 2 1 33 33 H 1.09000 * 109.46474 * 300.00275 * 4 2 1 34 34 H 1.09000 * 109.46941 * 59.99912 * 4 2 1 35 35 H 1.08999 * 109.47403 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46993 * 179.97438 * 6 5 2 37 37 H 1.08994 * 109.46632 * 299.99740 * 6 5 2 38 38 H 1.08999 * 109.47243 * 59.99284 * 6 5 2 39 39 H 1.08999 * 109.47333 * 300.00057 * 7 5 2 40 40 H 1.09000 * 109.47527 * 59.99950 * 7 5 2 41 41 H 1.09000 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.08999 * 109.46969 * 59.99675 * 9 8 5 43 43 H 1.09002 * 109.46512 * 300.00081 * 9 8 5 44 44 H 1.08001 * 125.88986 * 0.02563 * 11 10 9 45 45 H 1.08001 * 120.85702 * 359.97438 * 15 14 13 46 46 H 1.07995 * 120.34869 * 180.02562 * 16 15 14 47 47 H 1.09008 * 109.47393 * 89.99326 * 18 17 16 48 48 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 49 49 H 1.08001 * 119.71964 * 180.26654 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8788 1.5207 8 8 1.6074 -2.4159 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4723 -4.5781 2.5485 11 6 0.7076 -4.9637 1.5215 12 16 0.2689 -6.6533 1.7651 13 6 1.1780 -6.6665 3.2741 14 6 1.3224 -7.8273 4.1788 15 6 0.7070 -9.0468 3.8751 16 6 0.8735 -10.1027 4.7544 17 6 1.6351 -9.9204 5.8945 18 6 1.8183 -11.0673 6.8546 19 8 0.6681 -11.9142 6.8101 20 14 2.0339 -10.4031 8.5817 21 1 0.8300 -9.6233 8.9660 22 1 2.2138 -11.5333 9.5280 23 1 3.2292 -9.5231 8.6280 24 7 2.1993 -8.7572 6.1578 25 6 2.0743 -7.7249 5.3499 26 7 1.7079 -5.4919 3.4616 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8930 -0.5141 3.9322 37 1 1.8933 1.0276 3.0422 38 1 0.4400 0.0001 3.0422 39 1 4.3769 -1.3929 0.6307 40 1 4.3777 0.1487 1.5204 41 1 4.3773 -1.3931 2.4105 42 1 1.6638 -2.7112 3.5651 43 1 3.1174 -3.2252 2.6757 44 1 0.4134 -4.3475 0.6848 45 1 0.1172 -9.1613 2.9776 46 1 0.4137 -11.0587 4.5525 47 1 2.7020 -11.6398 6.5725 48 1 0.7167 -12.6751 7.4049 49 1 2.5548 -6.7899 5.5975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15258500_12621894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:35 Heat of formation + Delta-G solvation = -45.155001 kcal Electronic energy + Delta-G solvation = -27590.498365 eV Core-core repulsion = 23767.877580 eV Total energy + Delta-G solvation = -3822.620785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59264 -40.73153 -37.96731 -37.66464 -36.82687 -34.51158 -33.08778 -31.17529 -29.44977 -29.05796 -28.12953 -27.86702 -27.79543 -27.36904 -25.31728 -24.33724 -22.61375 -20.61144 -20.29805 -19.36959 -18.50890 -18.03931 -17.44543 -17.10948 -16.74815 -16.68421 -16.28587 -16.24531 -15.70421 -15.38748 -15.19720 -14.85934 -14.75407 -14.71034 -14.45980 -14.26426 -14.23286 -14.01118 -13.76730 -13.54354 -13.40535 -13.33505 -13.18731 -12.94208 -12.91276 -12.70104 -12.42703 -12.39857 -12.15432 -12.07172 -11.93434 -11.72652 -11.63244 -11.44658 -11.34206 -11.05381 -10.79787 -10.57737 -10.45531 -10.38517 -10.08657 -10.06739 -9.23433 -0.96759 0.12322 0.18121 0.25235 0.61303 1.20910 1.35831 1.51599 1.60994 1.69408 1.77746 2.08447 2.10812 2.38388 2.62089 2.76251 2.89831 3.62234 3.71357 3.74910 3.84026 4.07462 4.12486 4.13430 4.15164 4.20548 4.27221 4.39314 4.46252 4.49129 4.52861 4.74395 4.74418 4.76309 4.78352 4.79387 4.83693 4.84572 4.86529 4.94126 5.01587 5.04703 5.10543 5.11109 5.21090 5.32516 5.38698 5.42648 5.47428 5.48931 5.60164 5.65185 6.55310 6.73533 6.80401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.328 2.672 6 C -0.521 4.521 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.158 3.842 10 C 0.041 3.959 11 C -0.213 4.213 12 S 0.123 5.877 13 C 0.099 3.901 14 C -0.087 4.087 15 C -0.050 4.050 16 C -0.136 4.136 17 C 0.130 3.870 18 C -0.069 4.069 19 O -0.557 6.557 20 Si 1.002 2.998 21 H -0.292 1.292 22 H -0.249 1.249 23 H -0.267 1.267 24 N -0.505 5.505 25 C 0.146 3.854 26 N -0.474 5.474 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.202 0.798 45 H 0.160 0.840 46 H 0.168 0.832 47 H 0.117 0.883 48 H 0.408 0.592 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -2.329 -1.307 2.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.458 2.542 6 C -0.623 4.623 7 C -0.622 4.622 8 O -0.592 6.592 9 C 0.080 3.920 10 C -0.091 4.091 11 C -0.352 4.352 12 S 0.379 5.621 13 C -0.175 4.175 14 C -0.093 4.093 15 C -0.078 4.078 16 C -0.155 4.155 17 C -0.007 4.007 18 C -0.179 4.179 19 O -0.366 6.366 20 Si 0.827 3.173 21 H -0.218 1.218 22 H -0.173 1.173 23 H -0.192 1.192 24 N -0.215 5.215 25 C -0.015 4.015 26 N -0.190 5.190 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.219 0.781 45 H 0.177 0.823 46 H 0.185 0.815 47 H 0.134 0.866 48 H 0.260 0.740 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.133 -2.301 -0.472 2.352 hybrid contribution 0.095 1.014 -0.784 1.285 sum -0.037 -1.286 -1.255 1.798 Atomic orbital electron populations 1.21550 0.94159 1.01922 1.01830 1.25881 1.00435 1.02943 1.12946 1.21610 1.01318 0.94725 1.02242 1.21551 1.01019 1.00115 0.96767 0.76015 0.62269 0.51892 0.64041 1.27134 1.06934 1.09977 1.18209 1.27127 1.25388 1.05099 1.04602 1.85214 1.79846 1.46687 1.47406 1.20286 0.98587 0.85362 0.87772 1.20153 1.00516 0.97066 0.91360 1.27092 1.04980 0.97433 1.05716 1.84839 1.49330 1.09109 1.18791 1.25538 1.00286 0.94240 0.97487 1.18873 1.02863 0.91638 0.95878 1.21917 0.95650 0.90580 0.99648 1.21954 0.98848 1.01153 0.93544 1.21057 0.93008 0.92286 0.94348 1.24400 0.92780 0.93014 1.07751 1.86326 1.39203 1.42155 1.68963 0.84855 0.79339 0.79175 0.73954 1.21814 1.17276 1.19183 1.67171 1.21965 0.99956 1.32457 1.22966 0.93326 0.96906 0.88315 1.66106 1.23049 1.00177 1.29630 0.92200 0.93335 0.92264 0.91800 0.93089 0.91828 0.92261 0.93333 0.92166 0.91142 0.90258 0.91125 0.91079 0.90255 0.91124 0.89515 0.89446 0.78130 0.82269 0.81498 0.86577 0.74039 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.11 7.85 71.98 0.56 0.68 16 2 C -0.38 0.65 0.53 -10.79 -0.01 0.65 16 3 C -0.14 0.29 7.85 71.98 0.56 0.86 16 4 C -0.14 0.12 7.85 71.98 0.56 0.69 16 5 Si 1.33 -4.43 8.45 68.60 0.58 -3.85 16 6 C -0.52 1.15 8.50 113.37 0.96 2.11 16 7 C -0.52 1.22 8.50 113.37 0.96 2.18 16 8 O -0.63 0.50 7.41 -148.98 -1.10 -0.60 16 9 C 0.16 0.04 5.72 71.23 0.41 0.44 16 10 C 0.04 0.17 6.69 41.61 0.28 0.45 16 11 C -0.21 -0.48 10.52 66.79 0.70 0.22 16 12 S 0.12 0.13 22.49 -56.49 -1.27 -1.14 16 13 C 0.10 0.48 7.36 87.49 0.64 1.12 16 14 C -0.09 -0.36 5.89 -20.00 -0.12 -0.48 16 15 C -0.05 -0.03 9.73 22.72 0.22 0.19 16 16 C -0.14 -0.13 9.36 22.33 0.21 0.08 16 17 C 0.13 0.48 6.11 42.56 0.26 0.74 16 18 C -0.07 0.10 2.97 71.24 0.21 0.31 16 19 O -0.56 1.97 11.82 -148.98 -1.76 0.21 16 20 Si 1.00 1.70 27.15 68.60 1.86 3.56 16 21 H -0.29 -2.24 7.11 99.48 0.71 -1.53 16 22 H -0.25 0.23 7.11 99.48 0.71 0.94 16 23 H -0.27 -1.60 7.11 99.48 0.71 -0.89 16 24 N -0.50 -3.55 8.33 -182.84 -1.52 -5.07 16 25 C 0.15 0.86 10.85 85.03 0.92 1.79 16 26 N -0.47 -3.06 10.14 -177.80 -1.80 -4.86 16 27 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 28 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.06 -0.05 7.97 -2.39 -0.02 -0.07 16 30 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 31 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 -0.06 7.97 -2.39 -0.02 -0.08 16 34 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 36 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 37 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 38 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 39 H 0.07 -0.12 7.79 -2.39 -0.02 -0.13 16 40 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 41 H 0.07 -0.18 7.48 -2.39 -0.02 -0.20 16 42 H 0.09 -0.17 7.21 -2.39 -0.02 -0.18 16 43 H 0.09 -0.18 7.21 -2.39 -0.02 -0.20 16 44 H 0.20 -0.14 7.51 -2.91 -0.02 -0.16 16 45 H 0.16 -0.64 7.42 -2.91 -0.02 -0.66 16 46 H 0.17 -0.44 7.47 -2.91 -0.02 -0.46 16 47 H 0.12 -0.74 7.96 -2.38 -0.02 -0.76 16 48 H 0.41 -5.15 8.74 -74.06 -0.65 -5.80 16 49 H 0.17 0.79 7.83 -2.91 -0.02 0.77 16 Total: 0.00 -14.16 412.39 3.39 -10.77 By element: Atomic # 1 Polarization: -12.10 SS G_CDS: 1.05 Total: -11.05 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.36 Total: 12.02 kcal Atomic # 7 Polarization: -6.60 SS G_CDS: -3.33 Total: -9.93 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: -2.86 Total: -0.39 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.44 Total: -0.29 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.27 Total: -1.14 kcal Total: -14.16 3.39 -10.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_12621894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.381 kcal (2) G-P(sol) polarization free energy of solvation -14.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds