Wall clock time and date at job start Mon Mar 8 2021 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47462 * 2 1 4 4 C 1.53004 * 109.47006 * 239.99765 * 2 1 3 5 5 O 1.45204 * 109.47136 * 120.00245 * 2 1 3 6 6 C 1.34634 * 116.99948 * 59.99312 * 5 2 1 7 7 O 1.21520 * 120.00200 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00092 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00269 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.84762 * 23.79995 * 9 8 6 11 11 C 1.53778 * 113.61672 * 155.00001 * 9 8 6 12 12 C 1.53781 * 87.08178 * 89.19836 * 11 9 8 13 13 H 1.09001 * 113.61452 * 270.79774 * 12 11 9 14 14 C 1.50702 * 113.61428 * 139.97755 * 12 11 9 15 15 C 1.37997 * 119.93673 * 120.00072 * 14 12 11 16 16 C 1.39353 * 119.88018 * 180.02562 * 15 14 12 17 17 C 1.48398 * 120.12239 * 179.97438 * 16 15 14 18 18 C 1.39294 * 120.53799 * 0.02562 * 17 16 15 19 19 N 1.31746 * 120.59788 * 179.70785 * 18 17 16 20 20 C 1.31887 * 121.85045 * 0.55843 * 19 18 17 21 21 C 1.50699 * 119.48562 * 179.71310 * 20 19 18 22 22 O 1.42898 * 109.46964 * 149.72977 * 21 20 19 23 23 Si 1.86301 * 109.47146 * 29.72895 * 21 20 19 24 24 C 1.38309 * 121.02686 * 359.43873 * 20 19 18 25 25 C 1.38417 * 119.28297 * 0.27237 * 24 20 19 26 26 C 1.39320 * 119.75769 * 0.25106 * 16 15 14 27 27 C 1.38040 * 119.87265 * 359.53654 * 26 16 15 28 28 C 1.38302 * 120.12322 * 0.44637 * 27 26 16 29 29 C 1.53783 * 113.68903 * 252.53847 * 9 8 6 30 30 H 1.08999 * 109.46913 * 300.00544 * 1 2 3 31 31 H 1.08998 * 109.46716 * 59.99597 * 1 2 3 32 32 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47290 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47484 * 299.99933 * 3 2 1 35 35 H 1.08998 * 109.46982 * 59.99889 * 3 2 1 36 36 H 1.08998 * 109.47310 * 300.00277 * 4 2 1 37 37 H 1.08998 * 109.46862 * 60.00727 * 4 2 1 38 38 H 1.09007 * 109.47159 * 180.02562 * 4 2 1 39 39 H 0.97004 * 120.00033 * 359.97438 * 8 6 5 40 40 H 1.08996 * 113.61565 * 334.65114 * 11 9 8 41 41 H 1.09002 * 113.69046 * 203.75656 * 11 9 8 42 42 H 1.08005 * 120.06247 * 359.97438 * 15 14 12 43 43 H 1.08006 * 119.70285 * 359.97438 * 18 17 16 44 44 H 1.09002 * 109.46959 * 269.72948 * 21 20 19 45 45 H 0.96708 * 113.99549 * 180.02562 * 22 21 20 46 46 H 1.48498 * 110.00005 * 60.00183 * 23 21 20 47 47 H 1.48501 * 110.00049 * 181.31845 * 23 21 20 48 48 H 1.08004 * 120.36125 * 180.29773 * 24 20 19 49 49 H 1.07999 * 120.84035 * 179.97438 * 25 24 20 50 50 H 1.07996 * 120.06030 * 179.75156 * 26 16 15 51 51 H 1.07996 * 119.93725 * 180.20620 * 27 26 16 52 52 H 1.08003 * 119.87447 * 179.76397 * 28 27 26 53 53 H 1.08996 * 113.61705 * 156.32121 * 29 9 8 54 54 H 1.08993 * 113.61504 * 25.41519 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9514 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4171 9 6 1.6738 -4.0669 2.5831 10 1 1.4221 -4.5505 1.6393 11 6 2.6467 -4.8811 3.4522 12 6 1.8038 -4.4477 4.6632 13 1 2.1322 -3.5095 5.1105 14 6 1.6010 -5.5414 5.6800 15 6 2.0467 -5.3694 6.9747 16 6 1.8590 -6.3817 7.9138 17 6 2.3366 -6.2026 9.3073 18 6 2.9748 -5.0254 9.6911 19 7 3.3942 -4.8629 10.9294 20 6 3.2400 -5.7996 11.8450 21 6 3.7460 -5.5596 13.2440 22 8 2.9281 -6.2714 14.1749 23 14 3.6786 -3.7372 13.6248 24 6 2.6161 -6.9963 11.5425 25 6 2.1530 -7.2122 10.2561 26 6 1.2265 -7.5648 7.5381 27 6 0.7807 -7.7244 6.2414 28 6 0.9693 -6.7163 5.3136 29 6 0.6263 -4.2881 3.6871 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.6268 -2.2367 3.0833 40 1 3.6614 -4.4831 3.4617 41 1 2.6144 -5.9533 3.2590 42 1 2.5408 -4.4521 7.2594 43 1 3.1233 -4.2370 8.9680 44 1 4.7753 -5.9095 13.3231 45 1 3.1962 -6.1622 15.0977 46 1 2.2804 -3.2479 13.5204 47 1 4.2047 -3.4838 14.9902 48 1 2.4913 -7.7541 12.3019 49 1 1.6626 -8.1376 9.9923 50 1 1.0820 -8.3541 8.2609 51 1 0.2873 -8.6398 5.9500 52 1 0.6224 -6.8469 4.2992 53 1 0.0404 -5.1980 3.5572 54 1 0.0099 -3.4115 3.8861 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15258500_14315990.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:16 Heat of formation + Delta-G solvation = -20.514880 kcal Electronic energy + Delta-G solvation = -33938.555964 eV Core-core repulsion = 29421.848419 eV Total energy + Delta-G solvation = -4516.707544 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.00535 -41.60326 -40.88212 -39.34730 -37.97804 -37.73296 -35.41225 -34.70881 -33.88240 -33.19027 -31.79860 -30.75206 -28.37209 -28.30459 -27.27790 -26.66942 -26.47050 -24.94141 -24.10175 -23.32663 -22.66752 -21.75508 -21.14507 -19.95842 -19.34124 -18.67135 -18.49862 -17.62442 -17.39367 -17.22368 -17.09239 -16.73828 -16.55668 -16.23315 -15.86422 -15.71032 -15.46289 -15.30041 -15.07652 -14.92744 -14.69333 -14.61844 -14.43498 -14.21769 -14.12547 -13.95556 -13.58385 -13.36081 -13.35769 -13.28895 -13.05731 -12.92203 -12.86990 -12.77752 -12.67377 -12.49715 -12.34910 -12.29811 -12.02970 -11.79477 -11.69296 -11.40075 -11.22049 -11.21567 -11.10356 -10.81062 -10.59238 -10.28782 -10.17546 -9.65037 -9.03002 -4.77756 -0.51116 0.20821 0.44881 0.77576 1.13500 1.33604 1.60857 1.72975 1.94405 2.54177 2.78125 3.01630 3.11495 3.43113 3.47812 3.60228 3.69644 3.71170 3.73925 3.79073 3.79880 3.87406 3.94076 3.95798 4.04526 4.08605 4.17135 4.25675 4.30371 4.42675 4.47031 4.53319 4.60385 4.60871 4.62143 4.74376 4.75371 4.76209 4.79956 4.83236 4.87427 4.87506 4.90732 5.00238 5.03947 5.04666 5.08561 5.09321 5.17690 5.18901 5.26718 5.31383 5.46889 5.50517 5.59621 5.62378 5.64324 5.73972 6.04628 6.39059 6.54508 6.81673 7.33775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.682 5.682 9 C 0.131 3.869 10 H 0.093 0.907 11 C -0.123 4.123 12 C -0.066 4.066 13 H 0.111 0.889 14 C -0.070 4.070 15 C -0.109 4.109 16 C -0.055 4.055 17 C -0.098 4.098 18 C 0.109 3.891 19 N -0.483 5.483 20 C 0.112 3.888 21 C -0.074 4.074 22 O -0.556 6.556 23 Si 0.780 3.220 24 C -0.150 4.150 25 C -0.073 4.073 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.143 4.143 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.185 0.815 44 H 0.109 0.891 45 H 0.402 0.598 46 H -0.320 1.320 47 H -0.275 1.275 48 H 0.146 0.854 49 H 0.156 0.844 50 H 0.133 0.867 51 H 0.139 0.861 52 H 0.138 0.862 53 H 0.103 0.897 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 0.058 -0.528 3.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.027 3.973 10 H 0.111 0.889 11 C -0.160 4.160 12 C -0.084 4.084 13 H 0.129 0.871 14 C -0.070 4.070 15 C -0.127 4.127 16 C -0.056 4.056 17 C -0.100 4.100 18 C -0.049 4.049 19 N -0.194 5.194 20 C -0.024 4.024 21 C -0.183 4.183 22 O -0.366 6.366 23 Si 0.685 3.315 24 C -0.169 4.169 25 C -0.099 4.099 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.134 4.134 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.159 0.841 43 H 0.202 0.798 44 H 0.127 0.873 45 H 0.254 0.746 46 H -0.248 1.248 47 H -0.202 1.202 48 H 0.164 0.836 49 H 0.173 0.827 50 H 0.151 0.849 51 H 0.157 0.843 52 H 0.156 0.844 53 H 0.121 0.879 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.856 1.085 -0.750 3.146 hybrid contribution -0.770 -1.531 1.059 2.014 sum 2.086 -0.446 0.309 2.156 Atomic orbital electron populations 1.22472 0.94093 1.03681 1.03478 1.22351 0.94418 0.92587 0.81523 1.21891 1.02495 0.90866 1.04228 1.22475 1.01668 1.02246 0.97330 1.86311 1.71528 1.23239 1.47261 1.18328 0.78591 0.80786 0.82382 1.90908 1.42195 1.70903 1.44422 1.44364 1.54848 1.11959 1.23008 1.21863 0.97037 0.79131 0.99259 0.88896 1.23404 0.98645 1.01145 0.92846 1.21608 0.97147 0.97144 0.92538 0.87125 1.19713 0.97898 0.95424 0.93962 1.21308 0.99972 0.98993 0.92440 1.18644 1.00103 0.95520 0.91315 1.19921 1.00295 0.95779 0.94035 1.23206 0.92975 0.96482 0.92205 1.66773 1.19203 1.31013 1.02383 1.20752 0.96229 0.90851 0.94547 1.24612 0.96767 1.10157 0.86786 1.86427 1.57542 1.71714 1.20920 0.92939 0.81721 0.75690 0.81110 1.21925 0.98825 0.98748 0.97440 1.21981 0.96371 0.99419 0.92085 1.21425 0.98337 0.97034 0.97231 1.21331 0.99676 0.99915 0.93016 1.21348 0.98507 0.93071 1.00464 1.23599 0.96581 1.03099 0.94848 0.91984 0.89511 0.91782 0.91116 0.88362 0.91189 0.91770 0.89510 0.91885 0.74554 0.89337 0.87447 0.84099 0.79823 0.87337 0.74613 1.24839 1.20202 0.83639 0.82667 0.84936 0.84275 0.84407 0.87902 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.84 9.94 -55.44 -0.55 -2.39 16 6 C 0.65 3.92 8.06 129.79 1.05 4.96 16 7 O -0.59 -6.88 11.48 19.78 0.23 -6.65 16 8 N -0.68 0.43 5.27 -567.60 -2.99 -2.56 16 9 C 0.13 -0.30 4.32 45.52 0.20 -0.11 16 10 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 11 C -0.12 0.79 7.29 31.12 0.23 1.02 16 12 C -0.07 0.39 3.86 -11.01 -0.04 0.34 16 13 H 0.11 -0.87 8.09 -2.39 -0.02 -0.88 16 14 C -0.07 0.21 5.28 -19.90 -0.11 0.10 16 15 C -0.11 0.20 9.10 22.48 0.20 0.41 16 16 C -0.06 -0.03 5.88 -20.04 -0.12 -0.14 16 17 C -0.10 -0.19 5.89 -19.95 -0.12 -0.31 16 18 C 0.11 0.20 10.60 84.96 0.90 1.11 16 19 N -0.48 -2.28 8.34 -183.02 -1.53 -3.81 16 20 C 0.11 0.56 6.11 42.57 0.26 0.82 16 21 C -0.07 -0.09 2.98 71.24 0.21 0.12 16 22 O -0.56 -0.84 11.82 -148.98 -1.76 -2.60 16 23 Si 0.78 1.67 31.87 68.60 2.19 3.86 16 24 C -0.15 -0.57 9.37 22.33 0.21 -0.37 16 25 C -0.07 -0.13 9.54 22.68 0.22 0.09 16 26 C -0.12 0.07 9.44 22.48 0.21 0.28 16 27 C -0.12 0.24 10.03 22.24 0.22 0.46 16 28 C -0.12 0.33 8.60 22.31 0.19 0.52 16 29 C -0.14 0.50 7.25 31.12 0.23 0.73 16 30 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 33 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 37 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.42 -2.18 8.81 -92.71 -0.82 -3.00 16 40 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.11 -0.76 7.72 -2.39 -0.02 -0.78 16 42 H 0.14 -0.82 6.23 -2.91 -0.02 -0.84 16 43 H 0.19 -0.72 6.23 -2.91 -0.02 -0.74 16 44 H 0.11 -0.36 7.96 -2.39 -0.02 -0.37 16 45 H 0.40 -2.76 8.74 -74.05 -0.65 -3.41 16 46 H -0.32 -3.80 7.11 99.48 0.71 -3.09 16 47 H -0.28 -1.02 7.11 99.48 0.71 -0.32 16 48 H 0.15 0.35 7.47 -2.91 -0.02 0.33 16 49 H 0.16 -0.43 6.33 -2.91 -0.02 -0.45 16 50 H 0.13 -0.45 6.27 -2.91 -0.02 -0.47 16 51 H 0.14 -0.74 8.06 -2.91 -0.02 -0.77 16 52 H 0.14 -0.82 6.65 -2.91 -0.02 -0.84 16 53 H 0.10 -0.46 6.30 -2.39 -0.02 -0.47 16 54 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -20.10 430.62 0.88 -19.23 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -0.48 Total: -16.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.77 Total: 11.43 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -4.52 Total: -6.37 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -2.08 Total: -11.64 kcal Atomic # 14 Polarization: 1.67 SS G_CDS: 2.19 Total: 3.86 kcal Total: -20.10 0.88 -19.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_14315990.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.287 kcal (2) G-P(sol) polarization free energy of solvation -20.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds