Wall clock time and date at job start Mon Mar 8 2021 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33059 * 122.54468 * 0.02568 * 10 9 8 12 12 S 1.75809 * 109.92983 * 179.97438 * 11 10 9 13 13 C 1.75853 * 91.15045 * 359.97438 * 12 11 10 14 14 C 1.34568 * 109.54370 * 359.75701 * 13 12 11 15 15 C 1.48373 * 122.77202 * 180.22351 * 14 13 12 16 16 C 1.39740 * 120.53721 * 310.22859 * 15 14 13 17 17 C 1.38445 * 118.31155 * 180.02562 * 16 15 14 18 18 C 1.38278 * 119.28908 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.48547 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46630 * 330.00353 * 19 18 17 21 21 Si 1.86294 * 109.47258 * 210.00138 * 19 18 17 22 22 H 1.48494 * 109.47116 * 59.99934 * 21 19 18 23 23 H 1.48502 * 109.47041 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46952 * 300.00126 * 21 19 18 25 25 N 1.31917 * 121.03056 * 0.02562 * 18 17 16 26 26 C 1.31717 * 121.85496 * 359.69582 * 25 18 17 27 27 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 32 32 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 33 33 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 34 34 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 35 35 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 38 38 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 39 39 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 40 40 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 41 41 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 42 42 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 43 43 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 44 44 H 1.08000 * 125.03139 * 359.97433 * 11 10 9 45 45 H 1.08007 * 125.22709 * 179.97438 * 13 12 11 46 46 H 1.07997 * 120.84510 * 359.97438 * 16 15 14 47 47 H 1.08003 * 120.35741 * 180.02562 * 17 16 15 48 48 H 1.09000 * 109.47296 * 89.99788 * 19 18 17 49 49 H 0.96701 * 113.99766 * 299.99106 * 20 19 18 50 50 H 1.08000 * 119.70629 * 180.31214 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7097 -4.9714 1.5314 12 16 0.2459 -6.6536 1.7455 13 6 1.1396 -6.7445 3.2573 14 6 1.7203 -5.5569 3.5091 15 6 2.5525 -5.3087 4.7121 16 6 2.0846 -5.6544 5.9827 17 6 2.8990 -5.4018 7.0734 18 6 4.1379 -4.8214 6.8726 19 6 5.0277 -4.5440 8.0568 20 8 4.2216 -4.2863 9.2083 21 14 6.0925 -3.0578 7.6988 22 1 5.2268 -1.8787 7.4431 23 1 6.9689 -2.7841 8.8660 24 1 6.9301 -3.3257 6.5022 25 7 4.5527 -4.5060 5.6608 26 6 3.8156 -4.7321 4.5929 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.8931 -0.5142 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3931 2.4104 42 1 3.1176 -3.2253 2.6757 43 1 1.6639 -2.7113 3.5651 44 1 0.4195 -4.3495 0.6975 45 1 1.2141 -7.6200 3.8854 46 1 1.1121 -6.1064 6.1106 47 1 2.5705 -5.6560 8.0704 48 1 5.6632 -5.4095 8.2446 49 1 3.6297 -3.5276 9.1122 50 1 4.1916 -4.4644 3.6165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15258500_15607708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:51 Heat of formation + Delta-G solvation = -68.865546 kcal Electronic energy + Delta-G solvation = -28896.857915 eV Core-core repulsion = 25138.634874 eV Total energy + Delta-G solvation = -3758.223040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65544 -39.75560 -37.91289 -37.27364 -36.88909 -33.81881 -32.67912 -30.75422 -29.52699 -29.14029 -28.41346 -27.90835 -27.43278 -26.76525 -24.62015 -24.13956 -22.47276 -20.49169 -19.67987 -19.03701 -18.82078 -17.51645 -17.44646 -17.01743 -16.77631 -16.43935 -16.22202 -15.92102 -15.67153 -15.20536 -14.92398 -14.81636 -14.72067 -14.60582 -14.28928 -14.14769 -13.97251 -13.87530 -13.72188 -13.54934 -13.43573 -13.29245 -13.25538 -12.98358 -12.97705 -12.88705 -12.54279 -12.45631 -12.06894 -11.99997 -11.96122 -11.85704 -11.73069 -11.65604 -11.40373 -11.03087 -10.95122 -10.52741 -10.46345 -10.13139 -10.05038 -9.57922 -9.14071 -0.35608 0.14453 0.20185 0.65275 0.99316 1.21963 1.34296 1.57513 1.58697 1.67760 1.71685 1.99087 2.09630 2.36449 2.68268 3.01455 3.28151 3.62436 3.70890 3.84708 3.88493 4.02693 4.06557 4.06766 4.12689 4.23563 4.30171 4.32496 4.41592 4.56344 4.57850 4.63150 4.63735 4.68196 4.68989 4.69694 4.76692 4.79102 4.80506 4.94873 4.97897 5.01050 5.05278 5.05914 5.15678 5.20989 5.29694 5.33389 5.36986 5.41273 5.48768 5.53089 5.55652 5.62938 6.37129 6.83284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.146 3.854 10 C -0.105 4.105 11 C -0.175 4.175 12 S 0.116 5.884 13 C -0.200 4.200 14 C -0.060 4.060 15 C -0.077 4.077 16 C -0.059 4.059 17 C -0.146 4.146 18 C 0.091 3.909 19 C -0.077 4.077 20 O -0.537 6.537 21 Si 0.978 3.022 22 H -0.259 1.259 23 H -0.261 1.261 24 H -0.241 1.241 25 N -0.477 5.477 26 C 0.115 3.885 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.140 0.860 47 H 0.147 0.853 48 H 0.129 0.871 49 H 0.378 0.622 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 0.037 -0.021 1.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.581 6.581 9 C 0.068 3.932 10 C -0.117 4.117 11 C -0.311 4.311 12 S 0.383 5.617 13 C -0.336 4.336 14 C -0.074 4.074 15 C -0.081 4.081 16 C -0.085 4.085 17 C -0.165 4.165 18 C -0.046 4.046 19 C -0.187 4.187 20 O -0.341 6.341 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.185 1.185 24 H -0.164 1.164 25 N -0.187 5.187 26 C -0.044 4.044 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.195 0.805 45 H 0.185 0.815 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.147 0.853 49 H 0.225 0.775 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.848 -0.640 -1.071 1.509 hybrid contribution -0.471 0.946 0.779 1.313 sum -1.319 0.306 -0.292 1.385 Atomic orbital electron populations 1.21514 0.93797 1.01972 1.01837 1.25759 1.00668 1.02644 1.12586 1.21560 1.00827 0.94871 1.02186 1.21514 1.00673 1.00183 0.96750 0.76727 0.63164 0.53240 0.65085 1.27038 1.07046 1.09552 1.17735 1.27036 1.24876 1.04889 1.04621 1.85294 1.79404 1.46049 1.47358 1.20566 0.97512 0.87946 0.87127 1.18663 1.02009 0.95862 0.95148 1.25386 1.04069 0.97755 1.03851 1.84493 1.50424 1.08753 1.18069 1.25737 1.04448 1.01450 1.01931 1.17306 1.01341 0.93149 0.95618 1.19445 0.95234 1.00871 0.92573 1.21744 0.99764 0.95950 0.91083 1.21849 0.94576 0.99486 1.00626 1.21795 0.94126 0.95507 0.93211 1.24979 0.97470 1.12055 0.84202 1.86525 1.57696 1.53969 1.35940 0.85160 0.79300 0.75305 0.80312 1.18248 1.18527 1.16361 1.67174 1.35158 1.17830 0.98569 1.22880 0.89778 0.94514 0.97196 0.92694 0.92755 0.92202 0.92472 0.92445 0.92508 0.92188 0.92764 0.92649 0.91535 0.90622 0.90821 0.90726 0.90607 0.91365 0.91346 0.91428 0.80474 0.81491 0.84262 0.83539 0.85326 0.77490 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.25 0.53 -90.62 -0.05 0.20 16 3 C -0.14 0.11 7.85 37.16 0.29 0.40 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -1.62 8.45 -169.99 -1.44 -3.06 16 6 C -0.51 0.33 8.50 101.05 0.86 1.19 16 7 C -0.51 0.40 8.50 101.05 0.86 1.26 16 8 O -0.62 0.14 7.42 -35.23 -0.26 -0.12 16 9 C 0.15 -0.05 4.48 36.01 0.16 0.11 16 10 C -0.11 -0.05 5.79 -106.00 -0.61 -0.67 16 11 C -0.18 -0.08 10.41 28.93 0.30 0.23 16 12 S 0.12 -0.02 23.32 -107.50 -2.51 -2.53 16 13 C -0.20 0.05 10.86 29.43 0.32 0.37 16 14 C -0.06 -0.02 5.38 -106.60 -0.57 -0.59 16 15 C -0.08 -0.01 5.31 -104.75 -0.56 -0.57 16 16 C -0.06 0.04 9.75 -38.94 -0.38 -0.34 16 17 C -0.15 0.07 9.37 -39.49 -0.37 -0.30 16 18 C 0.09 0.06 6.08 -82.54 -0.50 -0.45 16 19 C -0.08 0.03 2.98 36.01 0.11 0.13 16 20 O -0.54 0.37 11.84 -35.23 -0.42 -0.05 16 21 Si 0.98 0.48 27.16 -169.99 -4.62 -4.14 16 22 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 23 H -0.26 -0.37 7.11 56.52 0.40 0.04 16 24 H -0.24 -0.46 7.11 56.52 0.40 -0.05 16 25 N -0.48 -0.82 8.34 -9.19 -0.08 -0.89 16 26 C 0.11 0.08 9.76 -17.18 -0.17 -0.09 16 27 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 -0.02 7.97 -51.93 -0.41 -0.44 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.04 7.48 -51.93 -0.39 -0.43 16 37 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.03 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 42 H 0.07 -0.10 5.23 -51.93 -0.27 -0.38 16 43 H 0.07 -0.06 7.21 -51.93 -0.37 -0.44 16 44 H 0.18 -0.04 7.48 -52.49 -0.39 -0.43 16 45 H 0.17 -0.31 8.06 -52.48 -0.42 -0.73 16 46 H 0.14 -0.32 8.06 -52.49 -0.42 -0.74 16 47 H 0.15 -0.26 7.47 -52.48 -0.39 -0.65 16 48 H 0.13 -0.15 7.96 -51.93 -0.41 -0.57 16 49 H 0.38 -1.45 8.70 45.56 0.40 -1.06 16 50 H 0.16 -0.14 6.56 -52.49 -0.34 -0.48 16 LS Contribution 413.47 15.07 6.23 6.23 Total: 0.00 -4.77 413.47 -10.36 -15.13 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: -7.54 Total: -12.14 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 0.27 Total: 1.58 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -0.68 Total: -0.18 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -6.05 Total: -7.20 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.51 Total: -2.53 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -4.77 -10.36 -15.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_15607708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.735 kcal (2) G-P(sol) polarization free energy of solvation -4.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds