Wall clock time and date at job start Mon Mar 8 2021 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40076 * 126.12960 * 2 1 4 4 C 1.30875 * 108.50714 * 180.27377 * 3 2 1 5 5 C 1.50692 * 125.70939 * 179.76064 * 4 3 2 6 6 O 1.42900 * 109.47481 * 180.02562 * 5 4 3 7 7 Si 1.63099 * 114.00427 * 179.97438 * 6 5 4 8 8 C 1.86298 * 109.46912 * 300.00154 * 7 6 5 9 9 C 1.86300 * 109.46890 * 60.00343 * 7 6 5 10 10 C 1.86296 * 109.47174 * 180.02562 * 7 6 5 11 11 C 1.52999 * 109.47049 * 60.00266 * 10 7 6 12 12 C 1.53001 * 109.47036 * 180.02562 * 10 7 6 13 13 C 1.53009 * 109.47166 * 300.00139 * 10 7 6 14 14 C 1.39543 * 108.58273 * 359.77759 * 4 3 2 15 15 C 1.36248 * 126.13301 * 179.89574 * 2 1 3 16 16 C 1.48043 * 126.33431 * 359.97438 * 15 2 1 17 17 C 1.35961 * 127.12715 * 132.35198 * 16 15 2 18 18 C 1.50696 * 125.78833 * 0.07268 * 17 16 15 19 19 O 1.42906 * 109.47032 * 322.23206 * 18 17 16 20 20 Si 1.86297 * 109.47287 * 202.22950 * 18 17 16 21 21 H 1.48499 * 109.47135 * 60.00125 * 20 18 17 22 22 H 1.48509 * 109.47193 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 299.99548 * 20 18 17 24 24 O 1.34102 * 108.43050 * 180.02562 * 17 16 15 25 25 C 1.34166 * 110.76963 * 359.76753 * 24 17 16 26 26 C 1.34336 * 109.02915 * 0.38663 * 25 24 17 27 27 H 1.08994 * 109.47183 * 274.36477 * 1 2 3 28 28 H 1.08997 * 109.47451 * 34.36773 * 1 2 3 29 29 H 1.09001 * 109.47025 * 154.36346 * 1 2 3 30 30 H 1.08998 * 109.46922 * 300.02449 * 5 4 3 31 31 H 1.09006 * 109.47504 * 60.02461 * 5 4 3 32 32 H 1.08998 * 109.47204 * 60.00050 * 8 7 6 33 33 H 1.09010 * 109.46845 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47259 * 299.99616 * 8 7 6 35 35 H 1.08996 * 109.47213 * 59.99884 * 9 7 6 36 36 H 1.09004 * 109.47189 * 180.02562 * 9 7 6 37 37 H 1.09008 * 109.46997 * 300.00005 * 9 7 6 38 38 H 1.08996 * 109.47128 * 59.99972 * 11 10 7 39 39 H 1.09008 * 109.47057 * 179.97438 * 11 10 7 40 40 H 1.09004 * 109.47214 * 299.99527 * 11 10 7 41 41 H 1.08997 * 109.47007 * 59.99940 * 12 10 7 42 42 H 1.08998 * 109.47007 * 180.02562 * 12 10 7 43 43 H 1.08996 * 109.47264 * 300.00104 * 12 10 7 44 44 H 1.08996 * 109.47136 * 60.00063 * 13 10 7 45 45 H 1.08996 * 109.46808 * 180.02562 * 13 10 7 46 46 H 1.09002 * 109.46651 * 300.00021 * 13 10 7 47 47 H 1.07999 * 126.08129 * 179.97438 * 14 4 3 48 48 H 1.08998 * 109.47108 * 82.22471 * 18 17 16 49 49 H 0.96702 * 113.99451 * 299.99667 * 19 18 17 50 50 H 1.07998 * 125.48502 * 180.25058 * 25 24 17 51 51 H 1.08008 * 126.98490 * 179.89592 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2910 1.1314 0.0000 4 6 3.5383 0.7352 -0.0059 5 6 4.7470 1.6351 -0.0132 6 8 5.9336 0.8390 -0.0189 7 14 7.3147 1.7066 -0.0277 8 6 7.3646 2.7788 -1.5504 9 6 7.3819 2.7823 1.4919 10 6 8.7749 0.5497 -0.0354 11 6 8.7194 -0.3333 -1.2837 12 6 10.0704 1.3637 -0.0430 13 6 8.7341 -0.3314 1.2149 14 6 3.5617 -0.6601 -0.0048 15 6 2.2685 -1.1004 0.0020 16 6 1.8225 -2.5121 0.0051 17 6 2.2713 -3.5162 -0.7941 18 6 3.3307 -3.3890 -1.8582 19 8 3.1909 -2.1310 -2.5216 20 14 3.1371 -4.7683 -3.0954 21 1 1.7935 -4.6860 -3.7223 22 1 4.1808 -4.6425 -4.1444 23 1 3.2826 -6.0755 -2.4061 24 8 1.6122 -4.6394 -0.4742 25 6 0.7400 -4.4126 0.5197 26 6 0.8036 -3.1176 0.8712 27 1 -0.3633 0.0782 1.0246 28 1 -0.3634 0.8482 -0.5801 29 1 -0.3633 -0.9265 -0.4446 30 1 4.7267 2.2634 -0.9036 31 1 4.7364 2.2650 0.8764 32 1 6.5103 3.4557 -1.5464 33 1 8.2875 3.3591 -1.5561 34 1 7.3254 2.1494 -2.4394 35 1 7.3526 2.1549 2.3827 36 1 8.3046 3.3625 1.4858 37 1 6.5275 3.4592 1.4959 38 1 8.7485 0.2944 -2.1743 39 1 9.5740 -1.0099 -1.2884 40 1 7.7965 -0.9132 -1.2778 41 1 10.1096 1.9924 0.8465 42 1 10.9247 0.6868 -0.0480 43 1 10.0997 1.9916 -0.9334 44 1 7.8112 -0.9113 1.2207 45 1 9.5886 -1.0079 1.2105 46 1 8.7736 0.2977 2.1041 47 1 4.4450 -1.2814 -0.0091 48 1 4.3170 -3.4493 -1.3981 49 1 2.3351 -2.0078 -2.9547 50 1 0.0897 -5.1516 0.9640 51 1 0.2258 -2.6234 1.6384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15343874_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:41:30 Heat of formation + Delta-G solvation = -33.689835 kcal Electronic energy + Delta-G solvation = -30403.381275 eV Core-core repulsion = 26429.875500 eV Total energy + Delta-G solvation = -3973.505775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.57482 -41.76593 -38.04768 -37.89428 -36.77595 -34.64240 -33.70080 -31.94316 -30.28462 -29.44253 -29.01863 -28.79283 -27.79871 -27.31284 -26.73354 -25.79511 -23.48794 -22.26457 -20.77705 -20.38569 -20.24189 -18.80296 -17.84078 -17.51811 -17.37239 -16.98332 -16.55802 -16.09510 -15.93771 -15.76011 -15.68219 -15.37073 -14.92181 -14.80857 -14.67617 -14.55038 -14.20719 -13.96116 -13.90707 -13.69538 -13.55328 -13.35390 -13.31186 -13.21666 -13.15508 -12.90595 -12.86273 -12.83668 -12.80216 -12.34982 -12.20791 -12.04708 -11.94178 -11.69545 -11.56422 -11.49115 -11.32757 -11.03715 -10.66545 -10.34403 -10.01176 -9.88425 -9.48150 -9.00033 0.33440 0.93590 1.06204 1.31167 1.42354 1.45325 1.51353 1.77491 1.81415 1.87778 1.90636 2.12070 2.19540 2.51343 3.22020 3.49037 3.61369 3.71847 3.95920 4.15243 4.18057 4.18396 4.28562 4.32907 4.35530 4.44902 4.52123 4.52619 4.53176 4.59512 4.67478 4.74762 4.80050 4.80703 4.82530 4.86852 4.92062 4.96272 5.06281 5.08506 5.16495 5.16899 5.24628 5.31062 5.36368 5.39737 5.48887 5.51449 5.58326 5.60857 5.67169 5.93329 5.96339 6.22921 6.41683 6.96657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.368 5.368 3 N -0.288 5.288 4 C 0.068 3.932 5 C 0.173 3.827 6 O -0.619 6.619 7 Si 1.293 2.707 8 C -0.512 4.512 9 C -0.513 4.513 10 C -0.373 4.373 11 C -0.134 4.134 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.196 4.196 15 C 0.147 3.853 16 C -0.107 4.107 17 C -0.015 4.015 18 C -0.042 4.042 19 O -0.512 6.512 20 Si 0.958 3.042 21 H -0.251 1.251 22 H -0.244 1.244 23 H -0.244 1.244 24 O -0.174 6.174 25 C -0.020 4.020 26 C -0.205 4.205 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.151 0.849 48 H 0.137 0.863 49 H 0.375 0.625 50 H 0.210 0.790 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 -1.945 -0.121 2.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.152 5.152 3 N -0.113 5.113 4 C -0.097 4.097 5 C 0.095 3.905 6 O -0.577 6.577 7 Si 1.424 2.576 8 C -0.614 4.614 9 C -0.615 4.615 10 C -0.417 4.417 11 C -0.191 4.191 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.225 4.225 15 C 0.022 3.978 16 C -0.110 4.110 17 C -0.067 4.067 18 C -0.152 4.152 19 O -0.316 6.316 20 Si 0.777 3.223 21 H -0.175 1.175 22 H -0.167 1.167 23 H -0.167 1.167 24 O -0.071 6.071 25 C -0.086 4.086 26 C -0.224 4.224 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.169 0.831 48 H 0.154 0.846 49 H 0.222 0.778 50 H 0.227 0.773 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.475 -2.043 -0.632 3.271 hybrid contribution 0.026 0.110 0.574 0.585 sum -2.449 -1.933 -0.058 3.120 Atomic orbital electron populations 1.21820 0.74404 1.04225 1.03307 1.48612 1.06052 1.02656 1.57916 1.77208 1.00844 1.07309 1.25967 1.21859 0.92423 0.94544 1.00849 1.19899 0.80186 0.88862 1.01545 1.85252 1.27442 1.53479 1.91508 0.76628 0.56413 0.59503 0.65009 1.27046 1.04539 1.11369 1.18472 1.27059 1.04590 1.11437 1.18413 1.25764 1.11000 1.06564 0.98352 1.21511 1.02149 0.99332 0.96104 1.21556 0.96657 0.99638 1.01546 1.21512 1.02119 0.99343 0.96128 1.20993 0.95362 0.93747 1.12350 1.18515 0.90424 0.85366 1.03524 1.18988 1.01404 0.91067 0.99580 1.23123 0.98753 0.84090 1.00764 1.24396 0.97404 0.96797 0.96578 1.86684 1.39769 1.34399 1.70755 0.85563 0.81750 0.76612 0.78377 1.17471 1.16658 1.16722 1.83824 1.43267 1.34815 1.45161 1.23978 0.95315 0.97898 0.91406 1.22890 1.01949 0.94363 1.03247 0.90947 0.89384 0.89589 0.90743 0.90889 0.91394 0.90777 0.90743 0.90835 0.90743 0.91388 0.92712 0.92919 0.91944 0.92549 0.92554 0.92523 0.92048 0.92888 0.92759 0.83093 0.84551 0.77814 0.77344 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.05 11.15 59.85 0.67 0.62 16 2 N -0.37 -1.15 4.05 -64.15 -0.26 -1.41 16 3 N -0.29 -1.39 12.56 33.61 0.42 -0.97 16 4 C 0.07 0.27 7.16 -82.52 -0.59 -0.32 16 5 C 0.17 0.27 5.74 36.00 0.21 0.48 16 6 O -0.62 -0.74 7.88 -35.23 -0.28 -1.02 16 7 Si 1.29 -0.76 8.45 -169.99 -1.44 -2.20 16 8 C -0.51 0.10 8.50 101.05 0.86 0.96 16 9 C -0.51 0.10 8.50 101.05 0.86 0.96 16 10 C -0.37 0.04 0.53 -90.61 -0.05 -0.01 16 11 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 12 C -0.14 0.05 7.85 37.16 0.29 0.35 16 13 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 14 C -0.20 -0.75 8.83 -39.68 -0.35 -1.10 16 15 C 0.15 0.45 5.81 -82.47 -0.48 -0.03 16 16 C -0.11 -0.17 5.55 -103.23 -0.57 -0.74 16 17 C -0.02 -0.01 6.29 -35.13 -0.22 -0.23 16 18 C -0.04 0.02 2.73 36.00 0.10 0.12 16 19 O -0.51 -0.13 10.76 -35.23 -0.38 -0.51 16 20 Si 0.96 -0.74 27.54 -169.99 -4.68 -5.42 16 21 H -0.25 0.01 7.11 56.52 0.40 0.41 16 22 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 23 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 24 O -0.17 -0.10 9.18 6.62 0.06 -0.04 16 25 C -0.02 0.02 12.04 29.36 0.35 0.38 16 26 C -0.20 0.03 10.60 -37.50 -0.40 -0.37 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.09 -0.16 7.41 -51.93 -0.38 -0.54 16 30 H 0.07 0.02 7.21 -51.93 -0.37 -0.36 16 31 H 0.07 0.01 7.21 -51.93 -0.37 -0.36 16 32 H 0.07 -0.03 7.48 -51.93 -0.39 -0.41 16 33 H 0.07 -0.04 7.79 -51.92 -0.40 -0.45 16 34 H 0.07 0.01 7.79 -51.93 -0.40 -0.39 16 35 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 36 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 -0.03 7.48 -51.92 -0.39 -0.41 16 38 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 39 H 0.05 0.02 8.14 -51.92 -0.42 -0.40 16 40 H 0.06 0.03 7.97 -51.93 -0.41 -0.39 16 41 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 42 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 44 H 0.06 0.03 7.96 -51.93 -0.41 -0.39 16 45 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 46 H 0.05 -0.01 7.80 -51.93 -0.40 -0.42 16 47 H 0.15 0.51 7.89 -52.49 -0.41 0.09 16 48 H 0.14 -0.22 7.96 -51.93 -0.41 -0.63 16 49 H 0.37 -0.83 8.70 45.56 0.40 -0.43 16 50 H 0.21 -1.00 8.06 -52.49 -0.42 -1.42 16 51 H 0.15 -0.24 8.06 -52.48 -0.42 -0.66 16 LS Contribution 415.15 15.07 6.26 6.26 Total: 0.00 -7.02 415.15 -7.20 -14.22 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -8.16 Total: -10.49 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 1.26 Total: 1.58 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: 0.16 Total: -2.38 kcal Atomic # 8 Polarization: -0.98 SS G_CDS: -0.60 Total: -1.57 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -6.12 Total: -7.62 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -7.02 -7.20 -14.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15343874_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.472 kcal (2) G-P(sol) polarization free energy of solvation -7.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds