Wall clock time and date at job start Mon Mar 8 2021 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40076 * 126.12960 * 2 1 4 4 C 1.30875 * 108.50714 * 180.27377 * 3 2 1 5 5 C 1.50692 * 125.70939 * 179.76064 * 4 3 2 6 6 O 1.42900 * 109.47481 * 180.02562 * 5 4 3 7 7 Si 1.63099 * 114.00427 * 179.97438 * 6 5 4 8 8 C 1.86298 * 109.46912 * 300.00154 * 7 6 5 9 9 C 1.86300 * 109.46890 * 60.00343 * 7 6 5 10 10 C 1.86296 * 109.47174 * 180.02562 * 7 6 5 11 11 C 1.52999 * 109.47049 * 60.00266 * 10 7 6 12 12 C 1.53001 * 109.47036 * 180.02562 * 10 7 6 13 13 C 1.53009 * 109.47166 * 300.00139 * 10 7 6 14 14 C 1.39543 * 108.58273 * 359.77759 * 4 3 2 15 15 C 1.36248 * 126.13301 * 179.89574 * 2 1 3 16 16 C 1.48043 * 126.33431 * 359.97438 * 15 2 1 17 17 C 1.35961 * 127.12715 * 132.35198 * 16 15 2 18 18 C 1.50696 * 125.78833 * 0.07268 * 17 16 15 19 19 O 1.42906 * 109.47032 * 322.23206 * 18 17 16 20 20 Si 1.86297 * 109.47287 * 202.22950 * 18 17 16 21 21 H 1.48499 * 109.47135 * 60.00125 * 20 18 17 22 22 H 1.48509 * 109.47193 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 299.99548 * 20 18 17 24 24 O 1.34102 * 108.43050 * 180.02562 * 17 16 15 25 25 C 1.34166 * 110.76963 * 359.76753 * 24 17 16 26 26 C 1.34336 * 109.02915 * 0.38663 * 25 24 17 27 27 H 1.08994 * 109.47183 * 274.36477 * 1 2 3 28 28 H 1.08997 * 109.47451 * 34.36773 * 1 2 3 29 29 H 1.09001 * 109.47025 * 154.36346 * 1 2 3 30 30 H 1.08998 * 109.46922 * 300.02449 * 5 4 3 31 31 H 1.09006 * 109.47504 * 60.02461 * 5 4 3 32 32 H 1.08998 * 109.47204 * 60.00050 * 8 7 6 33 33 H 1.09010 * 109.46845 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47259 * 299.99616 * 8 7 6 35 35 H 1.08996 * 109.47213 * 59.99884 * 9 7 6 36 36 H 1.09004 * 109.47189 * 180.02562 * 9 7 6 37 37 H 1.09008 * 109.46997 * 300.00005 * 9 7 6 38 38 H 1.08996 * 109.47128 * 59.99972 * 11 10 7 39 39 H 1.09008 * 109.47057 * 179.97438 * 11 10 7 40 40 H 1.09004 * 109.47214 * 299.99527 * 11 10 7 41 41 H 1.08997 * 109.47007 * 59.99940 * 12 10 7 42 42 H 1.08998 * 109.47007 * 180.02562 * 12 10 7 43 43 H 1.08996 * 109.47264 * 300.00104 * 12 10 7 44 44 H 1.08996 * 109.47136 * 60.00063 * 13 10 7 45 45 H 1.08996 * 109.46808 * 180.02562 * 13 10 7 46 46 H 1.09002 * 109.46651 * 300.00021 * 13 10 7 47 47 H 1.07999 * 126.08129 * 179.97438 * 14 4 3 48 48 H 1.08998 * 109.47108 * 82.22471 * 18 17 16 49 49 H 0.96702 * 113.99451 * 299.99667 * 19 18 17 50 50 H 1.07998 * 125.48502 * 180.25058 * 25 24 17 51 51 H 1.08008 * 126.98490 * 179.89592 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2910 1.1314 0.0000 4 6 3.5383 0.7352 -0.0059 5 6 4.7470 1.6351 -0.0132 6 8 5.9336 0.8390 -0.0189 7 14 7.3147 1.7066 -0.0277 8 6 7.3646 2.7788 -1.5504 9 6 7.3819 2.7823 1.4919 10 6 8.7749 0.5497 -0.0354 11 6 8.7194 -0.3333 -1.2837 12 6 10.0704 1.3637 -0.0430 13 6 8.7341 -0.3314 1.2149 14 6 3.5617 -0.6601 -0.0048 15 6 2.2685 -1.1004 0.0020 16 6 1.8225 -2.5121 0.0051 17 6 2.2713 -3.5162 -0.7941 18 6 3.3307 -3.3890 -1.8582 19 8 3.1909 -2.1310 -2.5216 20 14 3.1371 -4.7683 -3.0954 21 1 1.7935 -4.6860 -3.7223 22 1 4.1808 -4.6425 -4.1444 23 1 3.2826 -6.0755 -2.4061 24 8 1.6122 -4.6394 -0.4742 25 6 0.7400 -4.4126 0.5197 26 6 0.8036 -3.1176 0.8712 27 1 -0.3633 0.0782 1.0246 28 1 -0.3634 0.8482 -0.5801 29 1 -0.3633 -0.9265 -0.4446 30 1 4.7267 2.2634 -0.9036 31 1 4.7364 2.2650 0.8764 32 1 6.5103 3.4557 -1.5464 33 1 8.2875 3.3591 -1.5561 34 1 7.3254 2.1494 -2.4394 35 1 7.3526 2.1549 2.3827 36 1 8.3046 3.3625 1.4858 37 1 6.5275 3.4592 1.4959 38 1 8.7485 0.2944 -2.1743 39 1 9.5740 -1.0099 -1.2884 40 1 7.7965 -0.9132 -1.2778 41 1 10.1096 1.9924 0.8465 42 1 10.9247 0.6868 -0.0480 43 1 10.0997 1.9916 -0.9334 44 1 7.8112 -0.9113 1.2207 45 1 9.5886 -1.0079 1.2105 46 1 8.7736 0.2977 2.1041 47 1 4.4450 -1.2814 -0.0091 48 1 4.3170 -3.4493 -1.3981 49 1 2.3351 -2.0078 -2.9547 50 1 0.0897 -5.1516 0.9640 51 1 0.2258 -2.6234 1.6384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15343874_15493832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:41:29 Heat of formation + Delta-G solvation = -27.393175 kcal Electronic energy + Delta-G solvation = -30403.108231 eV Core-core repulsion = 26429.875500 eV Total energy + Delta-G solvation = -3973.232732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.56237 -41.93597 -38.05415 -37.93472 -36.77258 -34.71299 -33.76607 -31.92794 -30.38629 -29.44375 -29.00758 -28.85410 -27.77752 -27.31867 -26.72553 -25.86409 -23.53671 -22.28100 -20.89164 -20.40827 -20.28186 -18.82929 -17.85656 -17.53487 -17.37725 -17.01965 -16.66282 -16.10439 -15.93705 -15.80456 -15.65448 -15.42709 -14.92478 -14.79539 -14.71025 -14.60743 -14.18983 -13.97904 -13.90976 -13.68855 -13.52493 -13.34372 -13.30666 -13.23688 -13.12818 -12.93967 -12.88844 -12.84732 -12.78628 -12.34275 -12.20301 -12.05087 -11.96359 -11.75490 -11.62704 -11.55175 -11.36488 -11.10786 -10.63549 -10.35224 -10.00651 -9.94954 -9.54832 -9.16221 0.27500 0.89974 1.11652 1.27620 1.43807 1.47991 1.50329 1.73725 1.84377 1.87315 1.92736 2.03264 2.17438 2.51956 3.29805 3.46665 3.63878 3.69358 3.95745 4.14850 4.18516 4.18750 4.28914 4.36720 4.40964 4.47441 4.50674 4.54655 4.58931 4.62052 4.64425 4.78648 4.81391 4.83194 4.83838 4.88290 4.90094 4.92070 5.02393 5.06697 5.15503 5.15824 5.18171 5.27283 5.36359 5.39202 5.46574 5.47668 5.54197 5.63059 5.69296 5.75097 5.98983 6.12353 6.53583 6.76294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.318 5.318 4 C 0.058 3.942 5 C 0.167 3.833 6 O -0.630 6.630 7 Si 1.320 2.680 8 C -0.519 4.519 9 C -0.520 4.520 10 C -0.377 4.377 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.216 4.216 15 C 0.152 3.848 16 C -0.127 4.127 17 C -0.018 4.018 18 C -0.043 4.043 19 O -0.525 6.525 20 Si 0.998 3.002 21 H -0.260 1.260 22 H -0.257 1.257 23 H -0.256 1.256 24 O -0.182 6.182 25 C -0.012 4.012 26 C -0.216 4.216 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.148 0.852 48 H 0.143 0.857 49 H 0.383 0.617 50 H 0.245 0.755 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -2.179 0.115 3.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.156 5.156 3 N -0.143 5.143 4 C -0.106 4.106 5 C 0.090 3.910 6 O -0.588 6.588 7 Si 1.450 2.550 8 C -0.620 4.620 9 C -0.621 4.621 10 C -0.420 4.420 11 C -0.194 4.194 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.245 4.245 15 C 0.026 3.974 16 C -0.130 4.130 17 C -0.070 4.070 18 C -0.153 4.153 19 O -0.331 6.331 20 Si 0.819 3.181 21 H -0.184 1.184 22 H -0.180 1.180 23 H -0.180 1.180 24 O -0.079 6.079 25 C -0.077 4.077 26 C -0.235 4.235 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.165 0.835 48 H 0.161 0.839 49 H 0.232 0.768 50 H 0.261 0.739 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.040 -2.269 -0.395 3.814 hybrid contribution 0.161 0.135 0.511 0.552 sum -2.879 -2.134 0.116 3.585 Atomic orbital electron populations 1.22065 0.72726 1.05218 1.04285 1.48884 1.07080 1.02280 1.57398 1.77134 1.01380 1.08464 1.27355 1.22247 0.92924 0.95049 1.00411 1.20053 0.79640 0.88698 1.02614 1.85241 1.27754 1.54135 1.91673 0.76170 0.55397 0.58826 0.64588 1.27105 1.04989 1.11554 1.18386 1.27116 1.05042 1.11624 1.18327 1.25840 1.11646 1.06644 0.97886 1.21537 1.01764 0.99449 0.96607 1.21606 0.96188 0.99726 1.02290 1.21539 1.01717 0.99463 0.96651 1.21065 0.95764 0.93884 1.13781 1.18704 0.90332 0.86076 1.02314 1.19110 1.02593 0.90530 1.00762 1.23268 0.98828 0.84051 1.00875 1.24518 0.97559 0.96648 0.96547 1.86662 1.40587 1.34879 1.70931 0.84978 0.80489 0.75420 0.77172 1.18430 1.18042 1.17994 1.83837 1.43621 1.34723 1.45764 1.24682 0.94509 0.98333 0.90215 1.23074 1.01975 0.94862 1.03633 0.89864 0.88890 0.88187 0.89650 0.89715 0.91138 0.90203 0.91140 0.91185 0.90177 0.91120 0.92216 0.93248 0.92395 0.91828 0.93032 0.91804 0.92514 0.93234 0.92231 0.83465 0.83924 0.76819 0.73916 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.09 11.15 127.77 1.42 1.33 16 2 N -0.37 -2.57 4.05 -356.87 -1.45 -4.02 16 3 N -0.32 -3.40 12.56 -47.57 -0.60 -3.99 16 4 C 0.06 0.53 7.16 43.01 0.31 0.84 16 5 C 0.17 0.65 5.74 71.23 0.41 1.06 16 6 O -0.63 -2.02 7.88 -148.98 -1.17 -3.19 16 7 Si 1.32 -1.25 8.45 68.60 0.58 -0.67 16 8 C -0.52 0.25 8.50 113.37 0.96 1.21 16 9 C -0.52 0.28 8.50 113.37 0.96 1.24 16 10 C -0.38 -0.08 0.53 -10.79 -0.01 -0.08 16 11 C -0.14 -0.16 7.85 71.98 0.56 0.41 16 12 C -0.14 0.11 7.85 71.98 0.56 0.68 16 13 C -0.14 -0.16 7.85 71.99 0.56 0.40 16 14 C -0.22 -1.94 8.83 22.21 0.20 -1.75 16 15 C 0.15 1.07 5.81 40.68 0.24 1.30 16 16 C -0.13 -0.44 5.55 -18.97 -0.11 -0.54 16 17 C -0.02 -0.03 6.29 25.15 0.16 0.13 16 18 C -0.04 0.02 2.73 71.23 0.19 0.21 16 19 O -0.53 -0.75 10.76 -148.98 -1.60 -2.35 16 20 Si 1.00 -1.18 27.54 68.60 1.89 0.71 16 21 H -0.26 -0.02 7.11 99.48 0.71 0.69 16 22 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 23 H -0.26 -0.16 7.11 99.48 0.71 0.54 16 24 O -0.18 -0.12 9.18 0.76 0.01 -0.12 16 25 C -0.01 0.04 12.04 66.93 0.81 0.85 16 26 C -0.22 0.20 10.60 23.62 0.25 0.45 16 27 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.10 -0.40 7.41 -2.39 -0.02 -0.42 16 30 H 0.09 0.09 7.21 -2.39 -0.02 0.08 16 31 H 0.09 0.08 7.21 -2.38 -0.02 0.06 16 32 H 0.07 -0.06 7.48 -2.39 -0.02 -0.08 16 33 H 0.08 -0.13 7.79 -2.38 -0.02 -0.15 16 34 H 0.07 0.03 7.79 -2.39 -0.02 0.02 16 35 H 0.07 0.02 7.79 -2.39 -0.02 0.00 16 36 H 0.08 -0.13 7.79 -2.39 -0.02 -0.15 16 37 H 0.07 -0.07 7.48 -2.38 -0.02 -0.09 16 38 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 39 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 40 H 0.06 0.11 7.97 -2.39 -0.02 0.09 16 41 H 0.06 -0.15 7.79 -2.39 -0.02 -0.16 16 42 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.06 -0.15 7.79 -2.39 -0.02 -0.16 16 44 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 45 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.06 0.00 7.80 -2.39 -0.02 -0.02 16 47 H 0.15 1.27 7.89 -2.91 -0.02 1.25 16 48 H 0.14 -0.32 7.96 -2.39 -0.02 -0.34 16 49 H 0.38 -1.34 8.70 -74.06 -0.64 -1.99 16 50 H 0.24 -2.91 8.06 -2.91 -0.02 -2.94 16 51 H 0.17 -0.65 8.06 -2.91 -0.02 -0.68 16 Total: 0.00 -16.30 415.15 6.16 -10.14 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: 1.02 Total: -4.24 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 7.49 Total: 7.74 kcal Atomic # 7 Polarization: -5.97 SS G_CDS: -2.04 Total: -8.01 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: -2.77 Total: -5.66 kcal Atomic # 14 Polarization: -2.43 SS G_CDS: 2.47 Total: 0.04 kcal Total: -16.30 6.16 -10.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15343874_15493832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.254 kcal (2) G-P(sol) polarization free energy of solvation -16.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds