Wall clock time and date at job start Mon Mar 8 2021 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34220 * 116.99796 * 2 1 4 4 O 1.20828 * 120.00194 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00163 * 179.97438 * 3 2 1 6 6 S 1.81399 * 109.47410 * 179.97438 * 5 3 2 7 7 O 1.42097 * 109.46828 * 70.94721 * 6 5 3 8 8 C 1.76207 * 102.99967 * 179.97438 * 6 5 3 9 9 C 1.38313 * 119.87620 * 269.72748 * 8 6 5 10 10 C 1.38020 * 120.12081 * 179.76784 * 9 8 6 11 11 C 1.39341 * 119.87419 * 0.50567 * 10 9 8 12 12 C 1.48389 * 120.11887 * 179.72573 * 11 10 9 13 13 C 1.39324 * 120.11161 * 359.74683 * 12 11 10 14 14 C 1.38056 * 119.93048 * 179.67590 * 13 12 11 15 15 C 1.50689 * 119.92623 * 180.29693 * 14 13 12 16 16 O 1.42902 * 109.47353 * 65.32624 * 15 14 13 17 17 Si 1.86306 * 109.47121 * 185.32175 * 15 14 13 18 18 H 1.48501 * 109.46704 * 60.00007 * 17 15 14 19 19 H 1.48502 * 109.47038 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46978 * 300.00359 * 17 15 14 21 21 C 1.38260 * 120.14226 * 0.61936 * 14 13 12 22 22 C 1.38565 * 120.22232 * 359.68309 * 21 14 13 23 23 F 1.35103 * 119.96545 * 180.02562 * 22 21 14 24 24 C 1.38223 * 120.06783 * 359.97438 * 22 21 14 25 25 C 1.39331 * 119.75977 * 359.74455 * 11 10 9 26 26 C 1.38024 * 119.87759 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.46637 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47236 * 300.00010 * 1 2 3 29 29 H 1.09000 * 109.47037 * 60.00807 * 1 2 3 30 30 H 1.09004 * 109.46923 * 59.99740 * 5 3 2 31 31 H 1.09004 * 109.46818 * 300.00291 * 5 3 2 32 32 H 1.08003 * 119.94452 * 0.02562 * 9 8 6 33 33 H 1.07999 * 120.06919 * 180.27827 * 10 9 8 34 34 H 1.08004 * 120.03462 * 359.97438 * 13 12 11 35 35 H 1.08998 * 109.47570 * 305.32435 * 15 14 13 36 36 H 0.96699 * 114.00324 * 59.99449 * 16 15 14 37 37 H 1.08002 * 119.88717 * 179.69616 * 21 14 13 38 38 H 1.08003 * 120.07132 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.06741 * 180.02562 * 25 11 10 40 40 H 1.07993 * 119.94098 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 16 4.0806 3.0145 -0.0003 7 8 3.7950 3.5934 1.2655 8 6 5.8395 2.9078 0.0012 9 6 6.5265 2.8727 1.2012 10 6 7.9038 2.7843 1.2083 11 6 8.6028 2.7411 0.0037 12 6 10.0840 2.6523 0.0050 13 6 10.7811 2.6171 1.2109 14 6 12.1587 2.5277 1.2078 15 6 12.9120 2.4829 2.5122 16 8 12.5852 1.2794 3.2100 17 14 14.7435 2.5262 2.1733 18 1 15.0832 3.7767 1.4481 19 1 15.4859 2.4826 3.4587 20 1 15.1211 1.3543 1.3430 21 6 12.8491 2.4858 0.0107 22 6 12.1625 2.5267 -1.1922 23 9 12.8423 2.4850 -2.3590 24 6 10.7827 2.6092 -1.1996 25 6 7.9059 2.7820 -1.2021 26 6 6.5282 2.8656 -1.1975 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.9840 2.9103 2.1343 33 1 8.4392 2.7525 2.1458 34 1 10.2439 2.6549 2.1471 35 1 12.6349 3.3430 3.1216 36 1 12.8049 0.4718 2.7257 37 1 13.9271 2.4208 0.0131 38 1 10.2475 2.6407 -2.1371 39 1 8.4426 2.7484 -2.1387 40 1 5.9871 2.8978 -2.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:25 Heat of formation + Delta-G solvation = -146.069942 kcal Electronic energy + Delta-G solvation = -27136.759295 eV Core-core repulsion = 22810.507531 eV Total energy + Delta-G solvation = -4326.251764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.078 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.99928 -41.46392 -41.22800 -39.76486 -37.70373 -37.62555 -36.90579 -34.24615 -32.70327 -31.87541 -31.76887 -30.33380 -28.26841 -27.23046 -25.25160 -24.21040 -22.76449 -22.48629 -21.98890 -19.60696 -19.06224 -18.83561 -18.08024 -17.77294 -17.70671 -17.65029 -17.49648 -17.19485 -16.78868 -16.46513 -16.20348 -16.07791 -15.78604 -15.70422 -15.37781 -15.18351 -14.83028 -14.64347 -14.47055 -14.35157 -14.24684 -13.88071 -13.48217 -13.42649 -13.23189 -13.12598 -12.94201 -12.80800 -12.32802 -12.25339 -12.05279 -11.86753 -11.86356 -11.77985 -11.48903 -11.06673 -10.61434 -10.14090 -9.98272 -9.69917 -9.35651 -0.88445 -0.08661 0.13803 0.23156 0.64248 0.98630 1.04334 1.30944 1.39558 1.49206 1.74409 1.79577 2.16978 2.64344 2.79576 2.89353 3.20441 3.23550 3.43732 3.60904 3.63074 3.72869 3.80919 3.85528 3.87217 3.94713 4.11839 4.15728 4.21910 4.23854 4.27815 4.30921 4.47274 4.56329 4.59022 4.67943 4.78185 4.86663 4.91036 5.00022 5.10082 5.17010 5.26215 5.40517 5.60460 5.71584 6.36754 6.54104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.479 4.479 6 S 1.392 4.608 7 O -0.825 6.825 8 C -0.476 4.476 9 C -0.047 4.047 10 C -0.121 4.121 11 C -0.009 4.009 12 C -0.024 4.024 13 C -0.087 4.087 14 C -0.088 4.088 15 C -0.081 4.081 16 O -0.535 6.535 17 Si 0.945 3.055 18 H -0.247 1.247 19 H -0.249 1.249 20 H -0.249 1.249 21 C -0.156 4.156 22 C 0.111 3.889 23 F -0.133 7.133 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.036 4.036 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.157 0.843 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.378 0.622 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -2.586 -4.745 5.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.334 3.666 4 O -0.393 6.393 5 C -0.610 4.610 6 S 1.584 4.416 7 O -0.821 6.821 8 C -0.572 4.572 9 C -0.066 4.066 10 C -0.140 4.140 11 C -0.010 4.010 12 C -0.024 4.024 13 C -0.105 4.105 14 C -0.088 4.088 15 C -0.192 4.192 16 O -0.340 6.340 17 Si 0.767 3.233 18 H -0.171 1.171 19 H -0.172 1.172 20 H -0.173 1.173 21 C -0.175 4.175 22 C 0.092 3.908 23 F -0.111 7.111 24 C -0.155 4.155 25 C -0.145 4.145 26 C -0.055 4.055 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.226 0.774 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.706 -1.090 -4.475 4.660 hybrid contribution 0.707 -1.576 1.164 2.083 sum 1.414 -2.666 -3.311 4.480 Atomic orbital electron populations 1.23402 0.75377 1.04252 1.03078 1.86503 1.24096 1.32769 1.83619 1.22489 0.90061 0.81892 0.72125 1.90750 1.66982 1.35956 1.45575 1.28236 0.94294 1.27319 1.11166 1.70711 0.80266 0.82245 1.08358 1.93125 1.79487 1.65011 1.44454 1.28001 1.19891 1.11962 0.97341 1.21126 0.94334 0.93303 0.97798 1.21364 0.94316 1.00630 0.97696 1.18869 0.91030 0.97113 0.93943 1.18603 0.91906 0.99325 0.92602 1.21189 0.93182 0.98198 0.97965 1.20088 0.94401 0.99705 0.94651 1.25012 1.10132 0.91532 0.92503 1.86545 1.87015 1.14784 1.45622 0.85725 0.74388 0.82084 0.81089 1.17085 1.17240 1.17310 1.21165 1.00800 1.04102 0.91410 1.17387 0.89830 1.02243 0.81327 1.91554 1.79927 1.93707 1.45935 1.21260 0.92244 1.02546 0.99409 1.21384 0.94570 1.00973 0.97524 1.20824 0.93859 0.94035 0.96758 0.87669 0.91547 0.91265 0.82562 0.85370 0.84976 0.85014 0.84280 0.85814 0.77442 0.84640 0.83807 0.84760 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.35 -0.42 10.57 -39.23 -0.41 -0.84 16 3 C 0.49 0.73 7.98 36.01 0.29 1.02 16 4 O -0.50 -2.05 15.61 -18.75 -0.29 -2.34 16 5 C -0.48 0.85 6.48 36.01 0.23 1.09 16 6 S 1.39 -1.28 12.68 -107.50 -1.36 -2.65 16 7 O -0.83 -4.63 16.88 -35.23 -0.59 -5.23 16 8 C -0.48 0.42 5.62 -39.52 -0.22 0.20 16 9 C -0.05 -0.04 9.43 -39.63 -0.37 -0.42 16 10 C -0.12 -0.02 9.43 -39.25 -0.37 -0.39 16 11 C -0.01 0.00 5.88 -104.90 -0.62 -0.61 16 12 C -0.02 0.01 5.87 -104.91 -0.62 -0.61 16 13 C -0.09 0.04 9.06 -39.24 -0.36 -0.31 16 14 C -0.09 0.06 5.34 -104.69 -0.56 -0.50 16 15 C -0.08 0.13 2.80 36.00 0.10 0.23 16 16 O -0.53 0.49 12.84 -35.23 -0.45 0.04 16 17 Si 0.95 -1.30 25.13 -169.99 -4.27 -5.57 16 18 H -0.25 0.15 7.11 56.52 0.40 0.55 16 19 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 20 H -0.25 0.29 7.04 56.52 0.40 0.69 16 21 C -0.16 0.02 8.64 -39.45 -0.34 -0.32 16 22 C 0.11 0.06 7.29 -39.47 -0.29 -0.23 16 23 F -0.13 -0.22 17.27 2.25 0.04 -0.18 16 24 C -0.14 0.06 9.41 -39.18 -0.37 -0.30 16 25 C -0.13 0.23 9.43 -39.25 -0.37 -0.14 16 26 C -0.04 0.10 9.74 -39.63 -0.39 -0.28 16 27 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 28 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 29 H 0.07 -0.10 8.13 -51.93 -0.42 -0.53 16 30 H 0.16 -0.86 8.14 -51.92 -0.42 -1.29 16 31 H 0.13 -0.19 8.14 -51.92 -0.42 -0.61 16 32 H 0.13 0.24 7.43 -52.48 -0.39 -0.15 16 33 H 0.13 -0.15 6.21 -52.49 -0.33 -0.48 16 34 H 0.14 -0.20 6.21 -52.48 -0.33 -0.52 16 35 H 0.12 -0.32 7.96 -51.93 -0.41 -0.73 16 36 H 0.38 -1.52 8.70 45.56 0.40 -1.12 16 37 H 0.14 -0.14 4.84 -52.49 -0.25 -0.40 16 38 H 0.14 -0.35 6.21 -52.48 -0.33 -0.67 16 39 H 0.13 -0.53 6.21 -52.49 -0.33 -0.85 16 40 H 0.14 -1.00 8.06 -52.49 -0.42 -1.42 16 LS Contribution 357.68 15.07 5.39 5.39 Total: 0.00 -11.87 357.68 -8.44 -20.31 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: -3.30 Total: -8.38 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.18 Total: -0.55 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -1.75 Total: -8.37 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.04 Total: -0.18 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -4.27 Total: -5.57 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -1.36 Total: -2.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -11.87 -8.44 -20.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.762 kcal (2) G-P(sol) polarization free energy of solvation -11.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds