Wall clock time and date at job start Mon Mar 8 2021 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34220 * 116.99796 * 2 1 4 4 O 1.20828 * 120.00194 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00163 * 179.97438 * 3 2 1 6 6 S 1.81399 * 109.47410 * 179.97438 * 5 3 2 7 7 O 1.42097 * 109.46828 * 70.94721 * 6 5 3 8 8 C 1.76207 * 102.99967 * 179.97438 * 6 5 3 9 9 C 1.38313 * 119.87620 * 269.72748 * 8 6 5 10 10 C 1.38020 * 120.12081 * 179.76784 * 9 8 6 11 11 C 1.39341 * 119.87419 * 0.50567 * 10 9 8 12 12 C 1.48389 * 120.11887 * 179.72573 * 11 10 9 13 13 C 1.39324 * 120.11161 * 359.74683 * 12 11 10 14 14 C 1.38056 * 119.93048 * 179.67590 * 13 12 11 15 15 C 1.50689 * 119.92623 * 180.29693 * 14 13 12 16 16 O 1.42902 * 109.47353 * 65.32624 * 15 14 13 17 17 Si 1.86306 * 109.47121 * 185.32175 * 15 14 13 18 18 H 1.48501 * 109.46704 * 60.00007 * 17 15 14 19 19 H 1.48502 * 109.47038 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46978 * 300.00359 * 17 15 14 21 21 C 1.38260 * 120.14226 * 0.61936 * 14 13 12 22 22 C 1.38565 * 120.22232 * 359.68309 * 21 14 13 23 23 F 1.35103 * 119.96545 * 180.02562 * 22 21 14 24 24 C 1.38223 * 120.06783 * 359.97438 * 22 21 14 25 25 C 1.39331 * 119.75977 * 359.74455 * 11 10 9 26 26 C 1.38024 * 119.87759 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.46637 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47236 * 300.00010 * 1 2 3 29 29 H 1.09000 * 109.47037 * 60.00807 * 1 2 3 30 30 H 1.09004 * 109.46923 * 59.99740 * 5 3 2 31 31 H 1.09004 * 109.46818 * 300.00291 * 5 3 2 32 32 H 1.08003 * 119.94452 * 0.02562 * 9 8 6 33 33 H 1.07999 * 120.06919 * 180.27827 * 10 9 8 34 34 H 1.08004 * 120.03462 * 359.97438 * 13 12 11 35 35 H 1.08998 * 109.47570 * 305.32435 * 15 14 13 36 36 H 0.96699 * 114.00324 * 59.99449 * 16 15 14 37 37 H 1.08002 * 119.88717 * 179.69616 * 21 14 13 38 38 H 1.08003 * 120.07132 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.06741 * 180.02562 * 25 11 10 40 40 H 1.07993 * 119.94098 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 16 4.0806 3.0145 -0.0003 7 8 3.7950 3.5934 1.2655 8 6 5.8395 2.9078 0.0012 9 6 6.5265 2.8727 1.2012 10 6 7.9038 2.7843 1.2083 11 6 8.6028 2.7411 0.0037 12 6 10.0840 2.6523 0.0050 13 6 10.7811 2.6171 1.2109 14 6 12.1587 2.5277 1.2078 15 6 12.9120 2.4829 2.5122 16 8 12.5852 1.2794 3.2100 17 14 14.7435 2.5262 2.1733 18 1 15.0832 3.7767 1.4481 19 1 15.4859 2.4826 3.4587 20 1 15.1211 1.3543 1.3430 21 6 12.8491 2.4858 0.0107 22 6 12.1625 2.5267 -1.1922 23 9 12.8423 2.4850 -2.3590 24 6 10.7827 2.6092 -1.1996 25 6 7.9059 2.7820 -1.2021 26 6 6.5282 2.8656 -1.1975 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 5.9840 2.9103 2.1343 33 1 8.4392 2.7525 2.1458 34 1 10.2439 2.6549 2.1471 35 1 12.6349 3.3430 3.1216 36 1 12.8049 0.4718 2.7257 37 1 13.9271 2.4208 0.0131 38 1 10.2475 2.6407 -2.1371 39 1 8.4426 2.7484 -2.1387 40 1 5.9871 2.8978 -2.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_11652898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:24 Heat of formation + Delta-G solvation = -147.857674 kcal Electronic energy + Delta-G solvation = -27136.836817 eV Core-core repulsion = 22810.507531 eV Total energy + Delta-G solvation = -4326.329286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.078 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.03221 -41.55738 -41.14052 -39.66468 -37.73520 -37.60474 -37.09606 -34.16521 -32.60403 -31.80632 -31.70489 -30.25422 -28.19797 -27.13475 -25.17544 -24.11490 -22.70638 -22.50546 -21.91528 -19.53756 -19.02726 -18.88628 -18.02081 -17.75429 -17.73117 -17.65565 -17.45118 -17.15880 -16.79493 -16.40665 -16.12192 -16.00419 -15.78722 -15.61253 -15.31078 -15.10318 -14.75440 -14.53254 -14.45216 -14.27895 -14.23202 -13.93913 -13.48518 -13.31215 -13.16966 -13.09402 -12.90823 -12.72772 -12.26873 -12.16836 -11.96300 -11.90984 -11.89690 -11.79054 -11.55287 -11.00661 -10.51605 -10.02255 -9.92622 -9.70234 -9.29108 -0.80620 -0.02852 0.19526 0.35292 0.70312 0.96263 1.09164 1.39325 1.46660 1.57737 1.78521 1.86167 2.24137 2.69206 2.87067 2.94279 3.30686 3.34468 3.59606 3.61769 3.73829 3.84226 3.91562 3.99921 4.02481 4.03926 4.24113 4.29698 4.30106 4.40664 4.41945 4.44945 4.59555 4.68852 4.71921 4.76933 4.85631 4.99068 5.01933 5.07543 5.22113 5.23626 5.26651 5.50591 5.66730 5.85412 6.46949 6.62402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.360 6.360 3 C 0.487 3.513 4 O -0.537 6.537 5 C -0.472 4.472 6 S 1.434 4.566 7 O -0.900 6.900 8 C -0.477 4.477 9 C -0.073 4.073 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.029 4.029 13 C -0.093 4.093 14 C -0.088 4.088 15 C -0.076 4.076 16 O -0.548 6.548 17 Si 0.974 3.026 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.251 1.251 21 C -0.163 4.163 22 C 0.095 3.905 23 F -0.142 7.142 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.025 4.025 27 H 0.130 0.870 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.203 0.797 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.391 0.609 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -3.456 -6.741 7.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.331 3.669 4 O -0.428 6.428 5 C -0.604 4.604 6 S 1.629 4.371 7 O -0.895 6.895 8 C -0.574 4.574 9 C -0.092 4.092 10 C -0.152 4.152 11 C -0.019 4.019 12 C -0.029 4.029 13 C -0.111 4.111 14 C -0.088 4.088 15 C -0.187 4.187 16 O -0.355 6.355 17 Si 0.798 3.202 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.175 1.175 21 C -0.181 4.181 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.151 4.151 25 C -0.146 4.146 26 C -0.044 4.044 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.220 0.780 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.240 0.760 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.768 -1.967 -6.473 6.809 hybrid contribution 0.686 -1.384 1.760 2.342 sum 1.454 -3.352 -4.713 5.963 Atomic orbital electron populations 1.23629 0.74467 1.05894 1.02906 1.86501 1.25161 1.32569 1.83328 1.23040 0.91165 0.81535 0.71140 1.90741 1.67948 1.36918 1.47171 1.28210 0.92322 1.26555 1.13358 1.69791 0.79533 0.81891 1.05851 1.93016 1.81212 1.68144 1.47177 1.27919 1.19367 1.12452 0.97665 1.21098 0.94841 0.95309 0.97930 1.21421 0.94119 1.01274 0.98425 1.18996 0.91027 0.97501 0.94410 1.18680 0.92078 0.99386 0.92727 1.21344 0.93384 0.98009 0.98382 1.20136 0.94385 0.99564 0.94756 1.24998 1.09664 0.91762 0.92292 1.86515 1.87131 1.15554 1.46311 0.85322 0.74079 0.81322 0.79473 1.18191 1.19540 1.17484 1.21291 1.01198 1.04126 0.91532 1.17569 0.90400 1.03281 0.81160 1.91528 1.80186 1.93923 1.46412 1.21441 0.91874 1.01652 1.00156 1.21790 0.95167 0.99803 0.97862 1.21384 0.93751 0.91566 0.97661 0.85166 0.92505 0.90737 0.77998 0.85412 0.87155 0.84838 0.83879 0.84988 0.76017 0.84180 0.81775 0.82187 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.72 10.57 -51.32 -0.54 -1.26 16 3 C 0.49 1.43 7.98 71.24 0.57 2.00 16 4 O -0.54 -4.85 15.61 21.96 0.34 -4.51 16 5 C -0.47 2.12 6.48 71.24 0.46 2.58 16 6 S 1.43 -2.43 12.68 -56.49 -0.72 -3.14 16 7 O -0.90 -12.13 16.88 -148.98 -2.51 -14.64 16 8 C -0.48 1.09 5.62 22.31 0.13 1.22 16 9 C -0.07 -0.23 9.43 22.24 0.21 -0.02 16 10 C -0.13 -0.16 9.43 22.48 0.21 0.05 16 11 C -0.02 0.02 5.88 -20.04 -0.12 -0.09 16 12 C -0.03 0.03 5.87 -20.05 -0.12 -0.09 16 13 C -0.09 0.08 9.06 22.49 0.20 0.28 16 14 C -0.09 0.12 5.34 -19.91 -0.11 0.01 16 15 C -0.08 0.23 2.80 71.23 0.20 0.43 16 16 O -0.55 0.95 12.84 -148.98 -1.91 -0.96 16 17 Si 0.97 -2.25 25.13 68.60 1.72 -0.53 16 18 H -0.26 0.18 7.11 99.48 0.71 0.89 16 19 H -0.27 -0.32 7.11 99.48 0.71 0.39 16 20 H -0.25 0.56 7.04 99.48 0.70 1.26 16 21 C -0.16 0.03 8.64 22.35 0.19 0.22 16 22 C 0.10 0.08 7.29 22.34 0.16 0.24 16 23 F -0.14 -0.45 17.27 44.97 0.78 0.33 16 24 C -0.13 0.26 9.41 22.53 0.21 0.47 16 25 C -0.13 0.77 9.43 22.48 0.21 0.98 16 26 C -0.02 0.21 9.74 22.24 0.22 0.43 16 27 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.07 -0.23 8.13 -2.39 -0.02 -0.25 16 30 H 0.20 -2.88 8.14 -2.39 -0.02 -2.90 16 31 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.11 0.75 7.43 -2.91 -0.02 0.73 16 33 H 0.13 -0.08 6.21 -2.91 -0.02 -0.10 16 34 H 0.14 -0.31 6.21 -2.91 -0.02 -0.33 16 35 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 36 H 0.39 -3.12 8.70 -74.06 -0.64 -3.77 16 37 H 0.14 -0.26 4.84 -2.91 -0.01 -0.28 16 38 H 0.16 -1.15 6.21 -2.91 -0.02 -1.17 16 39 H 0.16 -1.84 6.21 -2.91 -0.02 -1.85 16 40 H 0.19 -3.57 8.06 -2.91 -0.02 -3.59 16 Total: 0.00 -30.16 357.68 2.21 -27.95 By element: Atomic # 1 Polarization: -14.33 SS G_CDS: 1.22 Total: -13.11 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.83 Total: 9.87 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -4.63 Total: -21.37 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.78 Total: 0.33 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 1.72 Total: -0.53 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -0.72 Total: -3.14 kcal Total: -30.16 2.21 -27.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_11652898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.908 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds