Wall clock time and date at job start Mon Mar 8 2021 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35252 * 116.99865 * 2 1 4 4 O 1.21768 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.40023 * 119.99597 * 180.02562 * 3 2 1 6 6 S 1.55359 * 119.99663 * 180.02562 * 5 3 2 7 7 O 1.52206 * 102.99734 * 73.13316 * 6 5 3 8 8 C 1.76193 * 102.99892 * 180.02562 * 6 5 3 9 9 C 1.38318 * 119.87801 * 90.00308 * 8 6 5 10 10 C 1.38020 * 120.12164 * 180.02562 * 9 8 6 11 11 C 1.39337 * 119.87891 * 359.97438 * 10 9 8 12 12 C 1.48393 * 120.11893 * 180.02562 * 11 10 9 13 13 C 1.39326 * 120.10648 * 180.02562 * 12 11 10 14 14 C 1.38048 * 119.93102 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.92606 * 179.97438 * 14 13 12 16 16 O 1.42900 * 109.46804 * 64.98805 * 15 14 13 17 17 Si 1.86306 * 109.47073 * 184.98379 * 15 14 13 18 18 H 1.48501 * 109.47162 * 60.00019 * 17 15 14 19 19 H 1.48498 * 109.47081 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46812 * 300.00223 * 17 15 14 21 21 C 1.38261 * 120.14448 * 359.97438 * 14 13 12 22 22 C 1.38565 * 120.22034 * 359.97438 * 21 14 13 23 23 F 1.35098 * 119.96298 * 179.97438 * 22 21 14 24 24 C 1.38219 * 120.07025 * 0.02562 * 22 21 14 25 25 C 1.39336 * 119.75545 * 0.28421 * 11 10 9 26 26 C 1.38011 * 119.87865 * 359.46336 * 25 11 10 27 27 H 1.09000 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46864 * 299.99394 * 1 2 3 29 29 H 1.08996 * 109.47464 * 59.99089 * 1 2 3 30 30 H 1.07994 * 119.99987 * 0.02562 * 5 3 2 31 31 H 1.08004 * 119.93896 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.06329 * 180.02562 * 10 9 8 33 33 H 1.08008 * 120.03657 * 0.02562 * 13 12 11 34 34 H 1.09001 * 109.47560 * 304.98482 * 15 14 13 35 35 H 0.96698 * 114.00589 * 60.00036 * 16 15 14 36 36 H 1.08008 * 119.88661 * 180.27143 * 21 14 13 37 37 H 1.08001 * 120.07773 * 179.97438 * 24 22 21 38 38 H 1.08000 * 120.05930 * 179.70184 * 25 11 10 39 39 H 1.07997 * 119.94190 * 180.23812 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 8 1.3798 2.2264 0.0005 5 6 3.4413 1.2783 -0.0005 6 16 4.1466 2.6626 0.0001 7 8 3.9192 3.1620 1.4197 8 6 5.8562 2.2363 -0.0017 9 6 6.5238 2.0707 -1.2017 10 6 7.8628 1.7363 -1.2090 11 6 8.5423 1.5661 -0.0045 12 6 9.9821 1.2071 -0.0061 13 6 10.6612 1.0363 1.1985 14 6 12.0005 0.7019 1.1928 15 6 12.7350 0.5178 2.4957 16 8 12.1934 -0.6057 3.1932 17 14 14.5426 0.2238 2.1535 18 1 15.1054 1.3913 1.4286 19 1 15.2663 0.0418 3.4374 20 1 14.6967 -0.9966 1.3216 21 6 12.6695 0.5354 -0.0057 22 6 11.9999 0.7026 -1.2072 23 9 12.6588 0.5391 -2.3753 24 6 10.6589 1.0375 -1.2120 25 6 7.8635 1.7288 1.2014 26 6 6.5258 2.0684 1.1970 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 4.0294 0.3726 -0.0014 31 1 5.9961 2.2025 -2.1348 32 1 8.3833 1.6076 -2.1465 33 1 10.1401 1.1648 2.1358 34 1 12.6218 1.4136 3.1064 35 1 12.2600 -1.4394 2.7079 36 1 13.7163 0.2693 -0.0053 37 1 10.1370 1.1683 -2.1485 38 1 8.3842 1.5933 2.1379 39 1 5.9996 2.1986 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_11652898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:34 Heat of formation + Delta-G solvation = -199.187676 kcal Electronic energy + Delta-G solvation = -26900.888682 eV Core-core repulsion = 22585.989299 eV Total energy + Delta-G solvation = -4314.899383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.071 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.14222 -40.07501 -38.49073 -38.36547 -36.79386 -34.69681 -33.00761 -31.85264 -31.48370 -30.34062 -29.05478 -28.52503 -26.31413 -25.90427 -23.86936 -22.85065 -21.41733 -20.79887 -19.94118 -18.29337 -17.41572 -16.89366 -16.61715 -16.43896 -15.93462 -15.86750 -15.56327 -15.37743 -15.10672 -14.87059 -14.71631 -14.38608 -14.31288 -14.01786 -13.50344 -13.29953 -13.18627 -13.08957 -12.45887 -12.32984 -12.18563 -12.03760 -11.86954 -11.77542 -11.60543 -11.36110 -11.18251 -10.94318 -10.71468 -10.46842 -10.31647 -9.85213 -9.69667 -9.37282 -9.01953 -8.67586 -8.54829 -8.39646 -8.02592 -7.16177 -5.79322 0.45517 0.86902 1.68914 1.79825 1.83532 1.97458 2.05858 2.44095 3.26354 3.55176 3.84352 4.04298 4.19793 4.25061 4.44697 4.52766 4.65963 4.74913 4.84535 4.94430 5.09170 5.23771 5.25235 5.30145 5.43208 5.63140 5.72797 5.77687 5.93140 5.97570 6.00458 6.04548 6.12403 6.17357 6.23301 6.29454 6.51839 6.53399 6.70521 6.82784 7.06389 7.14305 7.35778 7.50998 7.62379 8.31666 9.86128 Molecular weight = 351.07amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.002229 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.541307 B =12559.422728 C =13152.858286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.383 6.383 3 C 0.539 3.461 4 O -0.620 6.620 5 C -1.033 5.033 6 S 1.464 4.536 7 O -0.927 6.927 8 C -0.408 4.408 9 C -0.057 4.057 10 C -0.126 4.126 11 C -0.056 4.056 12 C 0.003 3.997 13 C -0.096 4.096 14 C -0.090 4.090 15 C -0.080 4.080 16 O -0.535 6.535 17 Si 0.951 3.049 18 H -0.249 1.249 19 H -0.254 1.254 20 H -0.252 1.252 21 C -0.171 4.171 22 C 0.109 3.891 23 F -0.138 7.138 24 C -0.145 4.145 25 C -0.121 4.121 26 C -0.056 4.056 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.122 0.878 35 H 0.377 0.623 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.414 -2.769 -3.992 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.303 6.303 3 C 0.404 3.596 4 O -0.525 6.525 5 C -1.160 5.160 6 S 1.665 4.335 7 O -0.923 6.923 8 C -0.500 4.500 9 C -0.076 4.076 10 C -0.144 4.144 11 C -0.056 4.056 12 C 0.003 3.997 13 C -0.114 4.114 14 C -0.091 4.091 15 C -0.191 4.191 16 O -0.340 6.340 17 Si 0.774 3.226 18 H -0.173 1.173 19 H -0.178 1.178 20 H -0.175 1.175 21 C -0.189 4.189 22 C 0.090 3.910 23 F -0.117 7.117 24 C -0.163 4.163 25 C -0.140 4.140 26 C -0.075 4.075 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.224 0.776 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.628 -1.398 -3.725 21.991 hybrid contribution 0.131 -2.600 0.934 2.766 sum 21.760 -3.998 -2.791 22.299 Atomic orbital electron populations 1.22395 0.81207 1.00650 1.00828 1.86272 1.19836 1.36518 1.87639 1.17867 0.87852 0.79629 0.74260 1.90675 1.67650 1.34981 1.59210 1.26222 0.99586 1.19262 1.70938 1.66633 0.75589 0.85087 1.06195 1.94471 1.82299 1.79066 1.36513 1.28883 1.22290 1.03259 0.95601 1.20828 0.93286 0.96030 0.97452 1.21230 0.95196 1.01419 0.96601 1.18605 0.90787 1.01999 0.94255 1.18751 0.92828 0.95946 0.92149 1.21203 0.93282 0.98582 0.98321 1.20005 0.94808 0.99915 0.94324 1.25014 1.08049 0.93209 0.92817 1.86535 1.84245 1.17767 1.45493 0.85681 0.74802 0.81723 0.80407 1.17265 1.17760 1.17536 1.20966 1.00517 1.05999 0.91456 1.17377 0.90593 1.02011 0.81043 1.91509 1.80880 1.93141 1.46149 1.21274 0.92655 1.02717 0.99690 1.21280 0.95085 1.00957 0.96716 1.21211 0.93398 0.93862 0.99022 0.90631 0.93958 0.93806 0.87390 0.84817 0.86031 0.84365 0.86032 0.77587 0.85193 0.83964 0.86207 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 10.45 101.05 1.06 2.02 16 2 O -0.38 -10.44 10.47 -42.04 -0.44 -10.88 16 3 C 0.54 16.26 7.63 31.40 0.24 16.50 16 4 O -0.62 -19.47 16.06 -19.46 -0.31 -19.78 16 5 C -1.03 -29.73 8.93 31.40 0.28 -29.45 16 6 S 1.46 36.41 12.78 -107.50 -1.37 35.03 16 7 O -0.93 -29.25 17.07 -35.23 -0.60 -29.85 16 8 C -0.41 -8.59 5.35 -39.52 -0.21 -8.80 16 9 C -0.06 -0.96 9.74 -39.63 -0.39 -1.34 16 10 C -0.13 -1.88 9.43 -39.25 -0.37 -2.25 16 11 C -0.06 -0.87 5.88 -104.90 -0.62 -1.48 16 12 C 0.00 0.04 5.87 -104.91 -0.62 -0.57 16 13 C -0.10 -1.11 9.06 -39.25 -0.36 -1.47 16 14 C -0.09 -0.88 5.35 -104.68 -0.56 -1.44 16 15 C -0.08 -0.63 2.80 36.00 0.10 -0.53 16 16 O -0.54 -4.61 12.83 -35.23 -0.45 -5.06 16 17 Si 0.95 6.47 25.13 -169.99 -4.27 2.19 16 18 H -0.25 -1.83 7.11 56.52 0.40 -1.43 16 19 H -0.25 -1.92 7.11 56.52 0.40 -1.52 16 20 H -0.25 -1.74 7.04 56.52 0.40 -1.35 16 21 C -0.17 -1.69 8.64 -39.45 -0.34 -2.04 16 22 C 0.11 1.21 7.29 -39.47 -0.29 0.93 16 23 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 24 C -0.14 -1.68 9.41 -39.18 -0.37 -2.05 16 25 C -0.12 -2.08 9.43 -39.26 -0.37 -2.45 16 26 C -0.06 -1.18 9.45 -39.63 -0.37 -1.56 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.11 3.16 7.87 -45.47 -0.36 2.80 16 31 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.12 1.41 6.21 -52.49 -0.33 1.08 16 33 H 0.14 1.56 6.21 -52.48 -0.33 1.24 16 34 H 0.12 0.84 7.96 -51.93 -0.41 0.43 16 35 H 0.38 2.04 8.70 45.56 0.40 2.44 16 36 H 0.13 1.07 4.84 -52.48 -0.25 0.81 16 37 H 0.14 1.46 6.21 -52.49 -0.33 1.13 16 38 H 0.12 1.75 6.21 -52.49 -0.33 1.42 16 39 H 0.13 3.08 7.22 -52.49 -0.38 2.70 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -39.56 351.43 -8.10 -47.66 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -2.80 Total: 12.92 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -3.18 Total: -36.00 kcal Atomic # 8 Polarization: -63.77 SS G_CDS: -1.81 Total: -65.57 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 6.47 SS G_CDS: -4.27 Total: 2.19 kcal Atomic # 16 Polarization: 36.41 SS G_CDS: -1.37 Total: 35.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -39.56 -8.10 -47.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_11652898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.532 kcal (2) G-P(sol) polarization free energy of solvation -39.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds