Wall clock time and date at job start Mon Mar 8 2021 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35252 * 116.99865 * 2 1 4 4 O 1.21768 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.40023 * 119.99597 * 180.02562 * 3 2 1 6 6 S 1.55359 * 119.99663 * 180.02562 * 5 3 2 7 7 O 1.52206 * 102.99734 * 73.13316 * 6 5 3 8 8 C 1.76193 * 102.99892 * 180.02562 * 6 5 3 9 9 C 1.38318 * 119.87801 * 90.00308 * 8 6 5 10 10 C 1.38020 * 120.12164 * 180.02562 * 9 8 6 11 11 C 1.39337 * 119.87891 * 359.97438 * 10 9 8 12 12 C 1.48393 * 120.11893 * 180.02562 * 11 10 9 13 13 C 1.39326 * 120.10648 * 180.02562 * 12 11 10 14 14 C 1.38048 * 119.93102 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.92606 * 179.97438 * 14 13 12 16 16 O 1.42900 * 109.46804 * 64.98805 * 15 14 13 17 17 Si 1.86306 * 109.47073 * 184.98379 * 15 14 13 18 18 H 1.48501 * 109.47162 * 60.00019 * 17 15 14 19 19 H 1.48498 * 109.47081 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46812 * 300.00223 * 17 15 14 21 21 C 1.38261 * 120.14448 * 359.97438 * 14 13 12 22 22 C 1.38565 * 120.22034 * 359.97438 * 21 14 13 23 23 F 1.35098 * 119.96298 * 179.97438 * 22 21 14 24 24 C 1.38219 * 120.07025 * 0.02562 * 22 21 14 25 25 C 1.39336 * 119.75545 * 0.28421 * 11 10 9 26 26 C 1.38011 * 119.87865 * 359.46336 * 25 11 10 27 27 H 1.09000 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46864 * 299.99394 * 1 2 3 29 29 H 1.08996 * 109.47464 * 59.99089 * 1 2 3 30 30 H 1.07994 * 119.99987 * 0.02562 * 5 3 2 31 31 H 1.08004 * 119.93896 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.06329 * 180.02562 * 10 9 8 33 33 H 1.08008 * 120.03657 * 0.02562 * 13 12 11 34 34 H 1.09001 * 109.47560 * 304.98482 * 15 14 13 35 35 H 0.96698 * 114.00589 * 60.00036 * 16 15 14 36 36 H 1.08008 * 119.88661 * 180.27143 * 21 14 13 37 37 H 1.08001 * 120.07773 * 179.97438 * 24 22 21 38 38 H 1.08000 * 120.05930 * 179.70184 * 25 11 10 39 39 H 1.07997 * 119.94190 * 180.23812 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 8 1.3798 2.2264 0.0005 5 6 3.4413 1.2783 -0.0005 6 16 4.1466 2.6626 0.0001 7 8 3.9192 3.1620 1.4197 8 6 5.8562 2.2363 -0.0017 9 6 6.5238 2.0707 -1.2017 10 6 7.8628 1.7363 -1.2090 11 6 8.5423 1.5661 -0.0045 12 6 9.9821 1.2071 -0.0061 13 6 10.6612 1.0363 1.1985 14 6 12.0005 0.7019 1.1928 15 6 12.7350 0.5178 2.4957 16 8 12.1934 -0.6057 3.1932 17 14 14.5426 0.2238 2.1535 18 1 15.1054 1.3913 1.4286 19 1 15.2663 0.0418 3.4374 20 1 14.6967 -0.9966 1.3216 21 6 12.6695 0.5354 -0.0057 22 6 11.9999 0.7026 -1.2072 23 9 12.6588 0.5391 -2.3753 24 6 10.6589 1.0375 -1.2120 25 6 7.8635 1.7288 1.2014 26 6 6.5258 2.0684 1.1970 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 4.0294 0.3726 -0.0014 31 1 5.9961 2.2025 -2.1348 32 1 8.3833 1.6076 -2.1465 33 1 10.1401 1.1648 2.1358 34 1 12.6218 1.4136 3.1064 35 1 12.2600 -1.4394 2.7079 36 1 13.7163 0.2693 -0.0053 37 1 10.1370 1.1683 -2.1485 38 1 8.3842 1.5933 2.1379 39 1 5.9996 2.1986 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_11652898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:23:34 Heat of formation + Delta-G solvation = -228.452385 kcal Electronic energy + Delta-G solvation = -26902.157695 eV Core-core repulsion = 22585.989299 eV Total energy + Delta-G solvation = -4316.168396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.071 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98513 -41.05869 -40.68253 -39.54340 -37.53999 -36.91929 -34.20899 -33.91994 -32.51373 -31.60616 -30.85893 -30.06536 -27.76989 -27.06126 -25.02293 -23.98639 -22.56396 -22.21215 -21.72598 -19.30027 -18.81895 -18.09316 -17.81947 -17.59882 -17.30910 -16.97734 -16.94380 -16.73915 -16.50621 -16.14249 -16.03416 -15.78033 -15.49874 -15.05387 -14.65689 -14.58013 -14.43906 -14.20700 -14.09204 -14.05655 -13.78982 -13.24321 -13.09551 -12.89595 -12.65666 -12.62661 -12.39649 -12.14762 -12.06637 -11.86630 -11.70806 -11.46034 -11.05142 -10.82189 -10.59657 -10.44326 -9.92204 -9.86421 -9.42433 -9.16208 -8.01584 -0.61740 0.02359 0.44049 0.57824 1.14265 1.47204 1.54234 1.67109 1.90745 2.20514 2.31328 2.75576 2.88601 2.98783 3.28242 3.37049 3.40267 3.66325 3.78781 3.85756 3.98570 4.06709 4.08523 4.13137 4.34336 4.39591 4.42163 4.54476 4.55968 4.58335 4.66684 4.81576 4.83601 4.89231 5.08845 5.12128 5.13643 5.22137 5.35351 5.40555 5.53182 5.58207 5.72754 5.98099 6.07072 6.68058 7.56684 Molecular weight = 351.07amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.002229 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.541307 B =12559.422728 C =13152.858286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.396 6.396 3 C 0.519 3.481 4 O -0.642 6.642 5 C -1.044 5.044 6 S 1.501 4.499 7 O -1.003 7.003 8 C -0.438 4.438 9 C -0.049 4.049 10 C -0.119 4.119 11 C -0.038 4.038 12 C -0.019 4.019 13 C -0.099 4.099 14 C -0.086 4.086 15 C -0.087 4.087 16 O -0.551 6.551 17 Si 0.989 3.011 18 H -0.253 1.253 19 H -0.266 1.266 20 H -0.248 1.248 21 C -0.160 4.160 22 C 0.101 3.899 23 F -0.138 7.138 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.085 4.085 27 H 0.127 0.873 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.390 0.610 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.649 -4.066 -5.985 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.316 6.316 3 C 0.385 3.615 4 O -0.549 6.549 5 C -1.170 5.170 6 S 1.706 4.294 7 O -0.999 6.999 8 C -0.535 4.535 9 C -0.068 4.068 10 C -0.137 4.137 11 C -0.038 4.038 12 C -0.019 4.019 13 C -0.117 4.117 14 C -0.086 4.086 15 C -0.197 4.197 16 O -0.358 6.358 17 Si 0.811 3.189 18 H -0.177 1.177 19 H -0.191 1.191 20 H -0.172 1.172 21 C -0.178 4.178 22 C 0.082 3.918 23 F -0.117 7.117 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.104 4.104 27 H 0.145 0.855 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.187 0.813 32 H 0.185 0.815 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.239 0.761 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 24.790 -2.718 -5.720 25.586 hybrid contribution -0.600 -2.347 1.528 2.864 sum 24.190 -5.066 -4.192 25.067 Atomic orbital electron populations 1.22842 0.78025 1.04117 1.01008 1.86213 1.23143 1.34925 1.87308 1.18209 0.88573 0.80259 0.74464 1.90636 1.68178 1.35812 1.60297 1.26724 0.99742 1.20022 1.70508 1.65490 0.76992 0.83394 1.03534 1.94367 1.85252 1.80584 1.39741 1.28090 1.19482 1.08238 0.97717 1.21239 0.94380 0.94217 0.96946 1.21704 0.94305 0.99431 0.98295 1.18914 0.92149 0.99089 0.93629 1.18589 0.91480 0.98504 0.93303 1.21320 0.94144 0.98285 0.97978 1.20176 0.94143 0.99001 0.95302 1.25249 1.08907 0.93523 0.91997 1.86514 1.84474 1.18644 1.46182 0.85135 0.72767 0.81390 0.79596 1.17655 1.19096 1.17171 1.21248 1.01449 1.04121 0.90991 1.17444 0.90600 1.02396 0.81359 1.91516 1.80812 1.93171 1.46201 1.21389 0.92925 1.01643 0.99714 1.21375 0.93511 1.00812 0.98804 1.21021 0.95330 0.96530 0.97553 0.85520 0.94668 0.92799 0.88645 0.81258 0.81497 0.84587 0.85342 0.76092 0.83262 0.82292 0.84332 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.44 10.45 113.37 1.19 2.63 16 2 O -0.40 -21.76 10.47 -61.84 -0.65 -22.40 16 3 C 0.52 32.12 7.63 68.25 0.52 32.64 16 4 O -0.64 -41.44 16.06 18.94 0.30 -41.13 16 5 C -1.04 -62.19 8.93 68.25 0.61 -61.59 16 6 S 1.50 77.92 12.78 -56.49 -0.72 77.19 16 7 O -1.00 -67.22 17.07 -148.98 -2.54 -69.76 16 8 C -0.44 -18.83 5.35 22.31 0.12 -18.71 16 9 C -0.05 -1.55 9.74 22.24 0.22 -1.33 16 10 C -0.12 -3.14 9.43 22.48 0.21 -2.92 16 11 C -0.04 -1.07 5.88 -20.04 -0.12 -1.19 16 12 C -0.02 -0.42 5.87 -20.05 -0.12 -0.54 16 13 C -0.10 -2.07 9.06 22.49 0.20 -1.86 16 14 C -0.09 -1.43 5.35 -19.90 -0.11 -1.53 16 15 C -0.09 -1.15 2.80 71.24 0.20 -0.95 16 16 O -0.55 -8.29 12.83 -148.98 -1.91 -10.20 16 17 Si 0.99 10.45 25.13 68.60 1.72 12.17 16 18 H -0.25 -2.86 7.11 99.48 0.71 -2.15 16 19 H -0.27 -3.43 7.11 99.48 0.71 -2.72 16 20 H -0.25 -2.50 7.04 99.48 0.70 -1.80 16 21 C -0.16 -2.57 8.64 22.35 0.19 -2.38 16 22 C 0.10 1.87 7.29 22.34 0.16 2.03 16 23 F -0.14 -2.62 17.26 44.97 0.78 -1.85 16 24 C -0.14 -2.66 9.41 22.53 0.21 -2.45 16 25 C -0.13 -4.31 9.43 22.48 0.21 -4.10 16 26 C -0.08 -3.75 9.45 22.24 0.21 -3.54 16 27 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.05 2.11 8.13 -2.39 -0.02 2.10 16 30 H 0.09 5.77 7.87 -7.38 -0.06 5.71 16 31 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 32 H 0.17 2.91 6.21 -2.91 -0.02 2.89 16 33 H 0.14 2.86 6.21 -2.91 -0.02 2.84 16 34 H 0.13 1.49 7.96 -2.39 -0.02 1.47 16 35 H 0.39 3.30 8.70 -74.06 -0.64 2.65 16 36 H 0.15 1.82 4.84 -2.91 -0.01 1.81 16 37 H 0.16 2.44 6.21 -2.91 -0.02 2.42 16 38 H 0.14 4.05 6.21 -2.91 -0.02 4.03 16 39 H 0.09 4.67 7.22 -2.91 -0.02 4.65 16 Total: -1.00 -90.61 351.43 2.10 -88.51 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 1.20 Total: 33.27 kcal Atomic # 6 Polarization: -69.71 SS G_CDS: 3.91 Total: -65.80 kcal Atomic # 8 Polarization: -138.70 SS G_CDS: -4.80 Total: -143.50 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 10.45 SS G_CDS: 1.72 Total: 12.17 kcal Atomic # 16 Polarization: 77.92 SS G_CDS: -0.72 Total: 77.19 kcal Total: -90.61 2.10 -88.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_11652898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.942 kcal (2) G-P(sol) polarization free energy of solvation -90.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds