Wall clock time and date at job start Mon Mar 8 2021 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47400 * 240.00074 * 2 1 3 5 5 Si 1.86298 * 109.47388 * 119.99927 * 2 1 3 6 6 C 1.86310 * 109.46998 * 300.00046 * 5 2 1 7 7 C 1.86297 * 109.47343 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47191 * 59.99740 * 5 2 1 9 9 C 1.42902 * 114.00086 * 179.97438 * 8 5 2 10 10 C 1.50699 * 109.47083 * 180.02562 * 9 8 5 11 11 C 1.33725 * 122.07856 * 359.97438 * 10 9 8 12 12 S 1.76259 * 108.21896 * 179.71805 * 11 10 9 13 13 C 1.76175 * 89.83418 * 0.33582 * 12 11 10 14 14 C 1.47873 * 125.47216 * 179.97438 * 13 12 11 15 15 C 1.39543 * 120.12706 * 359.69165 * 14 13 12 16 16 C 1.37990 * 119.90501 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.91688 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47054 * 300.02249 * 17 16 15 19 19 Si 1.86298 * 109.47574 * 180.02562 * 17 16 15 20 20 H 1.48506 * 109.47006 * 59.99846 * 19 17 16 21 21 H 1.48496 * 109.47317 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47082 * 299.99999 * 19 17 16 23 23 C 1.38295 * 120.17300 * 359.97438 * 16 15 14 24 24 C 1.38592 * 120.26198 * 0.02562 * 23 16 15 25 25 F 1.35096 * 119.95949 * 179.97438 * 24 23 16 26 26 C 1.38179 * 120.08864 * 0.02562 * 24 23 16 27 27 N 1.30224 * 109.05885 * 359.66272 * 13 12 11 28 28 H 1.09000 * 109.47400 * 299.99751 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00216 * 1 2 3 30 30 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47152 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46899 * 299.99979 * 3 2 1 33 33 H 1.09002 * 109.47284 * 59.99742 * 3 2 1 34 34 H 1.09002 * 109.46991 * 300.00082 * 4 2 1 35 35 H 1.08998 * 109.47172 * 59.99681 * 4 2 1 36 36 H 1.08999 * 109.47616 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47200 * 179.97438 * 6 5 2 38 38 H 1.08999 * 109.47019 * 300.00168 * 6 5 2 39 39 H 1.08996 * 109.46596 * 59.99766 * 6 5 2 40 40 H 1.09002 * 109.47072 * 299.99657 * 7 5 2 41 41 H 1.09002 * 109.47343 * 60.00041 * 7 5 2 42 42 H 1.08998 * 109.47173 * 179.97438 * 7 5 2 43 43 H 1.09004 * 109.46673 * 60.00486 * 9 8 5 44 44 H 1.09002 * 109.47481 * 300.00546 * 9 8 5 45 45 H 1.07998 * 125.88850 * 359.95779 * 11 10 9 46 46 H 1.07999 * 120.04284 * 0.02562 * 15 14 13 47 47 H 1.08999 * 109.46700 * 60.01482 * 17 16 15 48 48 H 0.96705 * 113.99886 * 299.99977 * 18 17 16 49 49 H 1.07998 * 119.87286 * 179.72357 * 23 16 15 50 50 H 1.08003 * 120.08579 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6073 -2.4159 1.5212 9 6 2.0295 -3.1816 2.6515 10 6 1.4731 -4.5783 2.5482 11 6 0.7075 -4.9636 1.5218 12 16 0.2700 -6.6537 1.7647 13 6 1.1807 -6.6674 3.2727 14 6 1.3267 -7.8286 4.1765 15 6 0.7094 -9.0407 3.8648 16 6 0.8483 -10.1212 4.7117 17 6 0.1812 -11.4301 4.3757 18 8 -1.2320 -11.2363 4.2899 19 14 0.5569 -12.6784 5.7067 20 1 0.0452 -12.1821 7.0094 21 1 -0.0999 -13.9683 5.3752 22 1 2.0255 -12.8799 5.7960 23 6 1.5980 -10.0062 5.8681 24 6 2.2142 -8.8058 6.1845 25 9 2.9448 -8.7001 7.3159 26 6 2.0815 -7.7165 5.3447 27 7 1.7102 -5.4925 3.4604 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8930 -0.5139 3.9323 38 1 1.8933 1.0278 3.0422 39 1 0.4400 0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1503 1.5217 42 1 4.3773 -1.3909 2.4117 43 1 1.6654 -2.7117 3.5651 44 1 3.1184 -3.2254 2.6745 45 1 0.4118 -4.3469 0.6860 46 1 0.1238 -9.1328 2.9621 47 1 0.5567 -11.7942 3.4194 48 1 -1.6349 -10.9121 5.1071 49 1 1.6998 -10.8537 6.5297 50 1 2.5620 -6.7812 5.5911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:54 Heat of formation + Delta-G solvation = -106.864370 kcal Electronic energy + Delta-G solvation = -29998.450305 eV Core-core repulsion = 25769.125537 eV Total energy + Delta-G solvation = -4229.324769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 383.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.94428 -41.15159 -40.37168 -38.01974 -37.57674 -36.90607 -33.84812 -32.13997 -30.80661 -29.54774 -29.14853 -28.04903 -27.91863 -27.44339 -27.14317 -26.01911 -23.41157 -22.53116 -20.55874 -20.24515 -19.47528 -18.71333 -17.81725 -17.59373 -17.30448 -17.05639 -16.81273 -16.70790 -16.64891 -16.16515 -16.11462 -15.80527 -15.19929 -15.18856 -14.91612 -14.87136 -14.76538 -14.44055 -14.10064 -13.97630 -13.79792 -13.67170 -13.45725 -13.36744 -13.35163 -13.28066 -13.00309 -12.99384 -12.98660 -12.47779 -12.40489 -12.32582 -12.12028 -12.11647 -11.87248 -11.79466 -11.69045 -11.50762 -10.91865 -10.81767 -10.60380 -10.50820 -10.24650 -10.14861 -9.92273 -9.27326 -0.91704 -0.06048 0.22355 0.27791 0.66141 1.01088 1.25129 1.34657 1.41673 1.65917 1.68737 1.82292 1.97870 2.29405 2.41935 2.75875 3.04720 3.27306 3.41909 3.68040 3.80956 3.88487 4.03766 4.04921 4.05470 4.12738 4.21263 4.31530 4.34738 4.41214 4.45236 4.51365 4.62969 4.66997 4.68196 4.68315 4.73139 4.75787 4.79258 4.85531 4.93707 4.94228 5.01302 5.04050 5.04656 5.08244 5.16819 5.27978 5.31769 5.35950 5.41651 5.49453 5.55012 5.59920 6.40143 6.61375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.294 2.706 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.627 6.627 9 C 0.163 3.837 10 C 0.054 3.946 11 C -0.206 4.206 12 S 0.107 5.893 13 C 0.103 3.897 14 C 0.008 3.992 15 C -0.080 4.080 16 C -0.088 4.088 17 C -0.080 4.080 18 O -0.534 6.534 19 Si 0.944 3.056 20 H -0.248 1.248 21 H -0.249 1.249 22 H -0.247 1.247 23 C -0.147 4.147 24 C 0.110 3.890 25 F -0.130 7.130 26 C -0.105 4.105 27 N -0.453 5.453 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.192 0.808 46 H 0.140 0.860 47 H 0.126 0.874 48 H 0.379 0.621 49 H 0.138 0.862 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -0.078 -0.770 0.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.426 2.574 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.085 3.915 10 C -0.078 4.078 11 C -0.345 4.345 12 S 0.364 5.636 13 C -0.172 4.172 14 C 0.004 3.996 15 C -0.101 4.101 16 C -0.089 4.089 17 C -0.191 4.191 18 O -0.339 6.339 19 Si 0.766 3.234 20 H -0.172 1.172 21 H -0.172 1.172 22 H -0.171 1.171 23 C -0.167 4.167 24 C 0.091 3.909 25 F -0.109 7.109 26 C -0.127 4.127 27 N -0.168 5.168 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.209 0.791 46 H 0.157 0.843 47 H 0.144 0.856 48 H 0.226 0.774 49 H 0.155 0.845 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.778 -1.671 -1.026 2.109 hybrid contribution 0.585 2.001 0.509 2.146 sum -0.193 0.330 -0.517 0.643 Atomic orbital electron populations 1.21513 0.93772 1.01957 1.01884 1.25777 1.00696 1.02692 1.12599 1.21556 1.00826 0.94820 1.02217 1.21515 1.00676 1.00151 0.96785 0.76603 0.63019 0.52733 0.65066 1.27038 1.07081 1.09582 1.17734 1.27039 1.24908 1.04880 1.04616 1.85231 1.79590 1.46244 1.47441 1.20162 0.97996 0.85990 0.87364 1.19852 1.00228 0.96418 0.91324 1.26927 1.04942 0.97147 1.05464 1.85093 1.49664 1.09139 1.19671 1.25457 1.00320 0.94345 0.97081 1.17531 0.98790 0.90243 0.93049 1.21052 0.98364 0.90703 0.99987 1.20004 0.98118 0.96871 0.93869 1.25011 0.83933 0.98487 1.11649 1.86542 1.17787 1.89007 1.40612 0.85735 0.81447 0.78840 0.77345 1.17160 1.17222 1.17095 1.21201 0.99625 0.97442 0.98394 1.17352 0.94778 0.94339 0.84440 1.91560 1.74753 1.96609 1.47967 1.21266 0.99199 0.99124 0.93105 1.66101 1.22143 0.99707 1.28852 0.92637 0.92755 0.92236 0.92462 0.92452 0.92459 0.92235 0.92755 0.92642 0.91333 0.90583 0.90806 0.90803 0.90582 0.91332 0.90406 0.90407 0.79130 0.84260 0.85634 0.77370 0.84452 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.09 7.85 37.15 0.29 0.38 16 2 C -0.37 0.37 0.53 -90.62 -0.05 0.32 16 3 C -0.14 0.15 7.85 37.16 0.29 0.44 16 4 C -0.13 0.09 7.85 37.16 0.29 0.38 16 5 Si 1.29 -2.18 8.45 -169.99 -1.44 -3.62 16 6 C -0.51 0.57 8.50 101.05 0.86 1.43 16 7 C -0.51 0.57 8.50 101.05 0.86 1.43 16 8 O -0.63 0.29 7.41 -35.23 -0.26 0.03 16 9 C 0.16 -0.01 5.72 36.01 0.21 0.20 16 10 C 0.05 0.10 6.69 -84.40 -0.56 -0.47 16 11 C -0.21 -0.19 10.53 29.15 0.31 0.11 16 12 S 0.11 0.05 22.40 -107.50 -2.41 -2.36 16 13 C 0.10 0.19 7.35 -14.29 -0.11 0.08 16 14 C 0.01 0.01 5.87 -104.98 -0.62 -0.61 16 15 C -0.08 0.02 9.16 -39.19 -0.36 -0.34 16 16 C -0.09 0.07 5.38 -104.69 -0.56 -0.49 16 17 C -0.08 0.16 2.82 36.01 0.10 0.26 16 18 O -0.53 0.71 12.76 -35.23 -0.45 0.26 16 19 Si 0.94 -1.58 25.06 -169.99 -4.26 -5.84 16 20 H -0.25 0.34 7.11 56.52 0.40 0.74 16 21 H -0.25 0.05 7.11 56.52 0.40 0.46 16 22 H -0.25 0.25 7.11 56.52 0.40 0.65 16 23 C -0.15 0.02 8.65 -39.43 -0.34 -0.32 16 24 C 0.11 0.13 7.29 -39.47 -0.29 -0.16 16 25 F -0.13 -0.29 17.26 2.25 0.04 -0.26 16 26 C -0.10 -0.12 9.66 -39.12 -0.38 -0.50 16 27 N -0.45 -1.22 10.11 -7.55 -0.08 -1.30 16 28 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 29 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 -0.04 7.97 -51.93 -0.41 -0.45 16 31 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 32 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 34 H 0.06 -0.04 7.97 -51.93 -0.41 -0.45 16 35 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 37 H 0.07 -0.09 7.48 -51.93 -0.39 -0.47 16 38 H 0.08 -0.10 7.79 -51.93 -0.40 -0.51 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 41 H 0.08 -0.10 7.79 -51.93 -0.40 -0.51 16 42 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 43 H 0.08 -0.09 7.21 -51.93 -0.37 -0.46 16 44 H 0.08 -0.09 7.21 -51.93 -0.37 -0.46 16 45 H 0.19 -0.08 7.51 -52.49 -0.39 -0.48 16 46 H 0.14 -0.16 7.30 -52.49 -0.38 -0.54 16 47 H 0.13 -0.38 7.96 -51.93 -0.41 -0.79 16 48 H 0.38 -1.67 8.70 45.56 0.40 -1.27 16 49 H 0.14 -0.17 4.86 -52.49 -0.26 -0.43 16 50 H 0.15 0.16 7.82 -52.48 -0.41 -0.25 16 LS Contribution 421.19 15.07 6.35 6.35 Total: 0.00 -4.84 421.19 -9.68 -14.51 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -7.11 Total: -9.91 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.06 Total: 2.14 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: -0.71 Total: 0.29 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.04 Total: -0.26 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: -5.70 Total: -9.46 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.41 Total: -2.36 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -4.84 -9.68 -14.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.351 kcal (2) G-P(sol) polarization free energy of solvation -4.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds