Wall clock time and date at job start Mon Mar 8 2021 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47400 * 240.00074 * 2 1 3 5 5 Si 1.86298 * 109.47388 * 119.99927 * 2 1 3 6 6 C 1.86310 * 109.46998 * 300.00046 * 5 2 1 7 7 C 1.86297 * 109.47343 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47191 * 59.99740 * 5 2 1 9 9 C 1.42902 * 114.00086 * 179.97438 * 8 5 2 10 10 C 1.50699 * 109.47083 * 180.02562 * 9 8 5 11 11 C 1.33725 * 122.07856 * 359.97438 * 10 9 8 12 12 S 1.76259 * 108.21896 * 179.71805 * 11 10 9 13 13 C 1.76175 * 89.83418 * 0.33582 * 12 11 10 14 14 C 1.47873 * 125.47216 * 179.97438 * 13 12 11 15 15 C 1.39543 * 120.12706 * 359.69165 * 14 13 12 16 16 C 1.37990 * 119.90501 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.91688 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47054 * 300.02249 * 17 16 15 19 19 Si 1.86298 * 109.47574 * 180.02562 * 17 16 15 20 20 H 1.48506 * 109.47006 * 59.99846 * 19 17 16 21 21 H 1.48496 * 109.47317 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47082 * 299.99999 * 19 17 16 23 23 C 1.38295 * 120.17300 * 359.97438 * 16 15 14 24 24 C 1.38592 * 120.26198 * 0.02562 * 23 16 15 25 25 F 1.35096 * 119.95949 * 179.97438 * 24 23 16 26 26 C 1.38179 * 120.08864 * 0.02562 * 24 23 16 27 27 N 1.30224 * 109.05885 * 359.66272 * 13 12 11 28 28 H 1.09000 * 109.47400 * 299.99751 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00216 * 1 2 3 30 30 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47152 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46899 * 299.99979 * 3 2 1 33 33 H 1.09002 * 109.47284 * 59.99742 * 3 2 1 34 34 H 1.09002 * 109.46991 * 300.00082 * 4 2 1 35 35 H 1.08998 * 109.47172 * 59.99681 * 4 2 1 36 36 H 1.08999 * 109.47616 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47200 * 179.97438 * 6 5 2 38 38 H 1.08999 * 109.47019 * 300.00168 * 6 5 2 39 39 H 1.08996 * 109.46596 * 59.99766 * 6 5 2 40 40 H 1.09002 * 109.47072 * 299.99657 * 7 5 2 41 41 H 1.09002 * 109.47343 * 60.00041 * 7 5 2 42 42 H 1.08998 * 109.47173 * 179.97438 * 7 5 2 43 43 H 1.09004 * 109.46673 * 60.00486 * 9 8 5 44 44 H 1.09002 * 109.47481 * 300.00546 * 9 8 5 45 45 H 1.07998 * 125.88850 * 359.95779 * 11 10 9 46 46 H 1.07999 * 120.04284 * 0.02562 * 15 14 13 47 47 H 1.08999 * 109.46700 * 60.01482 * 17 16 15 48 48 H 0.96705 * 113.99886 * 299.99977 * 18 17 16 49 49 H 1.07998 * 119.87286 * 179.72357 * 23 16 15 50 50 H 1.08003 * 120.08579 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6073 -2.4159 1.5212 9 6 2.0295 -3.1816 2.6515 10 6 1.4731 -4.5783 2.5482 11 6 0.7075 -4.9636 1.5218 12 16 0.2700 -6.6537 1.7647 13 6 1.1807 -6.6674 3.2727 14 6 1.3267 -7.8286 4.1765 15 6 0.7094 -9.0407 3.8648 16 6 0.8483 -10.1212 4.7117 17 6 0.1812 -11.4301 4.3757 18 8 -1.2320 -11.2363 4.2899 19 14 0.5569 -12.6784 5.7067 20 1 0.0452 -12.1821 7.0094 21 1 -0.0999 -13.9683 5.3752 22 1 2.0255 -12.8799 5.7960 23 6 1.5980 -10.0062 5.8681 24 6 2.2142 -8.8058 6.1845 25 9 2.9448 -8.7001 7.3159 26 6 2.0815 -7.7165 5.3447 27 7 1.7102 -5.4925 3.4604 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8930 -0.5139 3.9323 38 1 1.8933 1.0278 3.0422 39 1 0.4400 0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1503 1.5217 42 1 4.3773 -1.3909 2.4117 43 1 1.6654 -2.7117 3.5651 44 1 3.1184 -3.2254 2.6745 45 1 0.4118 -4.3469 0.6860 46 1 0.1238 -9.1328 2.9621 47 1 0.5567 -11.7942 3.4194 48 1 -1.6349 -10.9121 5.1071 49 1 1.6998 -10.8537 6.5297 50 1 2.5620 -6.7812 5.5911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_12621894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:53 Heat of formation + Delta-G solvation = -97.516606 kcal Electronic energy + Delta-G solvation = -29998.044956 eV Core-core repulsion = 25769.125537 eV Total energy + Delta-G solvation = -4228.919419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 383.130 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.05462 -41.18288 -40.36930 -37.95260 -37.48771 -36.82455 -33.84270 -32.14333 -30.82576 -29.44984 -29.05648 -28.04128 -27.82894 -27.36732 -27.07449 -26.03054 -23.42959 -22.52173 -20.51446 -20.24930 -19.48552 -18.68952 -17.77566 -17.57422 -17.31128 -17.03308 -16.86068 -16.71520 -16.64784 -16.07042 -16.05782 -15.73598 -15.21022 -15.18214 -14.83346 -14.81769 -14.69763 -14.47544 -14.03298 -13.97372 -13.75298 -13.59418 -13.36458 -13.35179 -13.33614 -13.18385 -12.96982 -12.93939 -12.91018 -12.39438 -12.39188 -12.23857 -12.04759 -12.04028 -11.79840 -11.72163 -11.61040 -11.43975 -10.92913 -10.88574 -10.50028 -10.44699 -10.25377 -10.06636 -9.93831 -9.30094 -0.95733 -0.07172 0.18112 0.24479 0.61589 1.14920 1.35703 1.47122 1.52693 1.63374 1.77718 1.93119 2.10492 2.38214 2.39905 2.75794 3.03190 3.36139 3.53632 3.71678 3.82170 3.90111 4.03244 4.12554 4.13706 4.17730 4.21048 4.38448 4.39220 4.46194 4.48679 4.64139 4.71138 4.74072 4.76949 4.78242 4.79073 4.83929 4.84712 4.84925 4.92875 5.01916 5.02150 5.10873 5.10939 5.11645 5.22154 5.33145 5.38976 5.42934 5.47922 5.57987 5.60042 5.65042 6.56228 6.69888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.379 4.379 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.328 2.672 6 C -0.521 4.521 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.158 3.842 10 C 0.039 3.961 11 C -0.213 4.213 12 S 0.134 5.866 13 C 0.088 3.912 14 C -0.001 4.001 15 C -0.076 4.076 16 C -0.082 4.082 17 C -0.073 4.073 18 O -0.546 6.546 19 Si 0.970 3.030 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.256 1.256 23 C -0.146 4.146 24 C 0.098 3.902 25 F -0.140 7.140 26 C -0.111 4.111 27 N -0.473 5.473 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.202 0.798 46 H 0.150 0.850 47 H 0.140 0.860 48 H 0.392 0.608 49 H 0.148 0.852 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -0.372 -1.073 1.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.458 2.542 6 C -0.622 4.622 7 C -0.622 4.622 8 O -0.591 6.591 9 C 0.080 3.920 10 C -0.093 4.093 11 C -0.352 4.352 12 S 0.391 5.609 13 C -0.186 4.186 14 C -0.005 4.005 15 C -0.096 4.096 16 C -0.082 4.082 17 C -0.184 4.184 18 O -0.353 6.353 19 Si 0.794 3.206 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.180 1.180 23 C -0.165 4.165 24 C 0.078 3.922 25 F -0.119 7.119 26 C -0.133 4.133 27 N -0.188 5.188 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.219 0.781 46 H 0.168 0.832 47 H 0.157 0.843 48 H 0.241 0.759 49 H 0.165 0.835 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.106 -1.953 -1.323 2.605 hybrid contribution 0.654 2.071 0.586 2.249 sum -0.453 0.118 -0.738 0.874 Atomic orbital electron populations 1.21549 0.94130 1.01943 1.01839 1.25878 1.00460 1.02926 1.12926 1.21611 1.01306 0.94735 1.02249 1.21551 1.01006 1.00132 0.96774 0.76013 0.62237 0.51900 0.64071 1.27132 1.06961 1.09968 1.18173 1.27133 1.25439 1.05099 1.04569 1.85214 1.79788 1.46670 1.47430 1.20280 0.98521 0.85415 0.87793 1.20148 1.00641 0.97070 0.91462 1.27147 1.04746 0.97661 1.05621 1.84917 1.48846 1.08676 1.18503 1.25660 1.00682 0.94409 0.97870 1.17611 0.99229 0.90610 0.93012 1.21179 0.97903 0.90266 1.00297 1.20123 0.97588 0.97228 0.93293 1.25000 0.83758 0.97413 1.12238 1.86519 1.17887 1.89060 1.41827 0.85371 0.80374 0.77691 0.77122 1.17527 1.19382 1.18008 1.21348 0.99223 0.97238 0.98727 1.17476 0.95397 0.94922 0.84365 1.91530 1.75140 1.96706 1.48522 1.21253 0.99550 0.99066 0.93452 1.66119 1.22885 1.00240 1.29605 0.92184 0.93334 0.92237 0.91822 0.93086 0.91817 0.92234 0.93334 0.92189 0.91171 0.90258 0.91084 0.91081 0.90258 0.91170 0.89549 0.89553 0.78091 0.83217 0.84253 0.75901 0.83458 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.15 7.85 71.98 0.56 0.71 16 2 C -0.38 0.73 0.53 -10.79 -0.01 0.72 16 3 C -0.14 0.32 7.85 71.98 0.56 0.88 16 4 C -0.14 0.15 7.85 71.98 0.56 0.71 16 5 Si 1.33 -4.70 8.45 68.60 0.58 -4.12 16 6 C -0.52 1.28 8.50 113.37 0.96 2.25 16 7 C -0.52 1.28 8.50 113.37 0.96 2.24 16 8 O -0.63 0.66 7.41 -148.98 -1.10 -0.44 16 9 C 0.16 0.00 5.72 71.24 0.41 0.41 16 10 C 0.04 0.15 6.69 41.61 0.28 0.43 16 11 C -0.21 -0.39 10.53 66.79 0.70 0.31 16 12 S 0.13 0.08 22.40 -56.49 -1.27 -1.18 16 13 C 0.09 0.36 7.35 87.48 0.64 1.00 16 14 C 0.00 0.00 5.87 -20.10 -0.12 -0.12 16 15 C -0.08 0.07 9.16 22.53 0.21 0.28 16 16 C -0.08 0.18 5.38 -19.91 -0.11 0.08 16 17 C -0.07 0.36 2.82 71.24 0.20 0.56 16 18 O -0.55 2.07 12.76 -148.98 -1.90 0.17 16 19 Si 0.97 -3.65 25.06 68.60 1.72 -1.93 16 20 H -0.25 0.82 7.11 99.48 0.71 1.53 16 21 H -0.27 0.08 7.11 99.48 0.71 0.78 16 22 H -0.26 0.59 7.11 99.48 0.71 1.30 16 23 C -0.15 0.05 8.65 22.37 0.19 0.25 16 24 C 0.10 0.29 7.29 22.34 0.16 0.45 16 25 F -0.14 -0.77 17.26 44.97 0.78 0.01 16 26 C -0.11 -0.37 9.66 22.57 0.22 -0.15 16 27 N -0.47 -2.87 10.11 -177.79 -1.80 -4.66 16 28 H 0.06 -0.13 7.79 -2.39 -0.02 -0.14 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.07 7.97 -2.39 -0.02 -0.09 16 31 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 32 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 34 H 0.06 -0.07 7.97 -2.39 -0.02 -0.09 16 35 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 -0.13 7.79 -2.39 -0.02 -0.14 16 37 H 0.07 -0.19 7.48 -2.39 -0.02 -0.21 16 38 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 39 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 41 H 0.08 -0.25 7.79 -2.39 -0.02 -0.26 16 42 H 0.07 -0.19 7.48 -2.39 -0.02 -0.21 16 43 H 0.09 -0.19 7.21 -2.39 -0.02 -0.20 16 44 H 0.09 -0.18 7.21 -2.39 -0.02 -0.20 16 45 H 0.20 -0.22 7.51 -2.91 -0.02 -0.24 16 46 H 0.15 -0.48 7.30 -2.91 -0.02 -0.51 16 47 H 0.14 -1.05 7.96 -2.39 -0.02 -1.07 16 48 H 0.39 -3.85 8.70 -74.05 -0.64 -4.50 16 49 H 0.15 -0.42 4.86 -2.91 -0.01 -0.43 16 50 H 0.15 0.55 7.82 -2.91 -0.02 0.53 16 Total: 0.00 -10.95 421.19 4.47 -6.47 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: 1.06 Total: -5.32 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.40 Total: 11.01 kcal Atomic # 7 Polarization: -2.87 SS G_CDS: -1.80 Total: -4.66 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: -3.01 Total: -0.27 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.78 Total: 0.01 kcal Atomic # 14 Polarization: -8.35 SS G_CDS: 2.30 Total: -6.05 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.27 Total: -1.18 kcal Total: -10.95 4.47 -6.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_12621894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.043 kcal (2) G-P(sol) polarization free energy of solvation -10.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds