Wall clock time and date at job start Mon Mar 8 2021 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47185 * 2 1 4 4 C 1.50698 * 109.47509 * 120.00273 * 2 1 3 5 5 C 1.38005 * 119.92355 * 64.72384 * 4 2 1 6 6 C 1.39371 * 119.92895 * 180.25931 * 5 4 2 7 7 C 1.48394 * 120.10861 * 180.02562 * 6 5 4 8 8 C 1.39339 * 120.11922 * 359.71650 * 7 6 5 9 9 C 1.38023 * 119.87454 * 179.74824 * 8 7 6 10 10 C 1.38324 * 120.11883 * 0.55602 * 9 8 7 11 11 C 1.50699 * 119.87532 * 179.72094 * 10 9 8 12 12 H 1.08994 * 112.84883 * 168.78418 * 11 10 9 13 13 C 1.53784 * 113.61383 * 299.98007 * 11 10 9 14 14 C 1.53776 * 87.08052 * 139.98241 * 13 11 10 15 15 H 1.09004 * 113.61497 * 89.11702 * 14 13 11 16 16 O 1.42904 * 113.61384 * 220.01502 * 14 13 11 17 17 C 1.53776 * 87.08202 * 334.56366 * 14 13 11 18 18 C 1.38317 * 120.24340 * 359.69930 * 10 9 8 19 19 C 1.38017 * 120.12506 * 0.02562 * 18 10 9 20 20 C 1.39280 * 119.78259 * 359.97438 * 6 5 4 21 21 C 1.38274 * 119.85090 * 0.02701 * 20 6 5 22 22 F 1.35098 * 119.96259 * 179.97438 * 21 20 6 23 23 C 1.38305 * 119.92885 * 244.99994 * 4 2 1 24 24 H 0.96707 * 114.00132 * 299.99279 * 1 2 3 25 25 H 1.09002 * 109.46909 * 240.00239 * 2 1 3 26 26 H 1.48499 * 110.00120 * 300.00574 * 3 2 1 27 27 H 1.48510 * 109.99754 * 61.32268 * 3 2 1 28 28 H 1.08004 * 120.04004 * 0.26114 * 5 4 2 29 29 H 1.08001 * 120.06111 * 0.02562 * 8 7 6 30 30 H 1.07997 * 119.94033 * 180.29972 * 9 8 7 31 31 H 1.09004 * 113.61139 * 254.53106 * 13 11 10 32 32 H 1.08994 * 113.61730 * 25.42715 * 13 11 10 33 33 H 0.96704 * 113.99977 * 179.97438 * 16 14 13 34 34 H 1.09000 * 113.62075 * 270.88368 * 17 14 13 35 35 H 1.09004 * 113.61446 * 139.97827 * 17 14 13 36 36 H 1.07999 * 119.93599 * 180.02562 * 18 10 9 37 37 H 1.07996 * 120.06217 * 179.97438 * 19 18 10 38 38 H 1.07996 * 120.07385 * 180.02562 * 20 6 5 39 39 H 1.07999 * 119.88889 * 359.71810 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6794 -2.0568 1.3991 6 6 2.1393 -2.7127 2.5395 7 6 1.8711 -4.1604 2.7247 8 6 1.1536 -4.8674 1.7619 9 6 0.9115 -6.2149 1.9368 10 6 1.3699 -6.8610 3.0707 11 6 1.0971 -8.3311 3.2591 12 1 1.6665 -8.7654 4.0808 13 6 -0.4002 -8.6801 3.2950 14 6 -0.0497 -9.9244 2.4622 15 1 0.2064 -10.7955 3.0653 16 8 -1.0048 -10.2168 1.4402 17 6 1.1747 -9.1439 1.9559 18 6 2.0781 -6.1629 4.0321 19 6 2.3308 -4.8164 3.8648 20 6 2.8524 -2.0052 3.5043 21 6 3.0997 -0.6565 3.3261 22 9 3.7907 0.0321 4.2607 23 6 2.6390 -0.0105 2.1907 24 1 -0.3934 0.4416 0.7651 25 1 1.7922 -0.5138 -0.8900 26 1 1.5613 2.4679 -1.2084 27 1 1.5878 2.4585 1.2244 28 1 1.1264 -2.6016 0.6482 29 1 0.7914 -4.3628 0.8784 30 1 0.3597 -6.7649 1.1890 31 1 -0.7704 -8.9130 4.2935 32 1 -1.0284 -7.9634 2.7662 33 1 -0.7896 -10.9983 0.9127 34 1 0.9772 -8.5541 1.0609 35 1 2.0761 -9.7513 1.8734 36 1 2.4340 -6.6724 4.9153 37 1 2.8835 -4.2722 4.6163 38 1 3.2114 -2.5089 4.3896 39 1 2.8339 1.0429 2.0544 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:27 Heat of formation + Delta-G solvation = -48.216385 kcal Electronic energy + Delta-G solvation = -23154.438402 eV Core-core repulsion = 19522.523904 eV Total energy + Delta-G solvation = -3631.914498 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.89432 -41.41852 -40.61426 -39.17906 -37.69201 -36.11902 -33.80486 -32.56488 -31.63395 -30.29164 -27.14046 -26.77677 -26.19066 -24.25656 -23.58516 -22.48141 -21.73328 -20.29873 -19.19731 -18.71453 -17.83604 -17.61484 -17.30871 -16.94513 -16.67997 -16.56545 -16.13845 -16.05813 -15.73131 -15.40845 -15.30395 -14.75067 -14.41385 -14.30057 -14.14009 -13.98356 -13.63011 -13.46629 -13.32876 -13.23600 -12.82281 -12.55275 -12.40249 -12.15827 -12.02387 -11.84253 -11.65688 -11.43239 -10.81352 -10.70856 -10.60827 -9.94421 -9.85025 -9.04276 -5.01903 -0.52075 0.03389 0.41807 0.69342 1.18860 1.53448 1.89890 2.31519 2.88462 3.02557 3.15811 3.24217 3.37990 3.46980 3.55930 3.57455 3.77591 3.83747 3.85306 3.92050 3.97794 4.01888 4.06806 4.10434 4.33011 4.33849 4.43244 4.54553 4.59057 4.70762 4.72833 4.80933 4.89952 4.91353 4.96823 4.98178 5.07583 5.10170 5.19614 5.27097 5.42095 5.61236 5.64874 5.74250 5.94857 6.30283 6.65652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.074 4.074 3 Si 0.684 3.316 4 C -0.085 4.085 5 C -0.096 4.096 6 C -0.010 4.010 7 C -0.057 4.057 8 C -0.100 4.100 9 C -0.113 4.113 10 C -0.061 4.061 11 C -0.075 4.075 12 H 0.102 0.898 13 C -0.120 4.120 14 C 0.075 3.925 15 H 0.083 0.917 16 O -0.560 6.560 17 C -0.163 4.163 18 C -0.113 4.113 19 C -0.102 4.102 20 C -0.144 4.144 21 C 0.112 3.888 22 F -0.134 7.134 23 C -0.156 4.156 24 H 0.378 0.622 25 H 0.124 0.876 26 H -0.253 1.253 27 H -0.258 1.258 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.379 0.621 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -2.729 -0.007 3.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.184 4.184 3 Si 0.585 3.415 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.010 4.010 7 C -0.057 4.057 8 C -0.118 4.118 9 C -0.131 4.131 10 C -0.061 4.061 11 C -0.093 4.093 12 H 0.120 0.880 13 C -0.157 4.157 14 C 0.016 3.984 15 H 0.101 0.899 16 O -0.365 6.365 17 C -0.201 4.201 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.162 4.162 21 C 0.092 3.908 22 F -0.113 7.113 23 C -0.174 4.174 24 H 0.225 0.775 25 H 0.141 0.859 26 H -0.178 1.178 27 H -0.183 1.183 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.227 0.773 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.947 -1.638 -0.276 2.559 hybrid contribution -0.528 -0.532 0.638 0.984 sum 1.419 -2.170 0.361 2.618 Atomic orbital electron populations 1.86619 1.17290 1.79992 1.49368 1.25033 0.84225 1.11140 0.98022 0.94888 0.91707 0.74347 0.80516 1.20022 0.97936 0.94371 0.96196 1.21152 0.99320 0.93601 0.97332 1.18592 0.96351 0.92343 0.93696 1.18643 0.99988 0.91386 0.95707 1.21230 0.97721 0.94168 0.98632 1.20990 1.00205 0.94238 0.97663 1.19734 0.97091 0.94872 0.94370 1.21333 0.97413 0.91450 0.99142 0.87975 1.23173 0.95479 0.96768 1.00271 1.23358 0.88835 0.96416 0.89835 0.89871 1.86539 1.49812 1.51384 1.48803 1.23838 0.99186 0.99166 0.97865 1.21000 0.98977 0.94046 0.99096 1.21225 0.99348 0.94614 0.96821 1.21250 1.01349 0.92558 1.01062 1.17409 0.95608 0.90045 0.87693 1.91544 1.76748 1.79328 1.63636 1.21094 1.01483 1.00897 0.93947 0.77462 0.85869 1.17802 1.18327 0.84564 0.85432 0.85448 0.90464 0.88840 0.77305 0.88733 0.90869 0.85594 0.85554 0.84121 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.33 12.83 -35.23 -0.45 -0.78 16 2 C -0.07 0.06 2.80 36.00 0.10 0.16 16 3 Si 0.68 -0.78 29.87 -169.99 -5.08 -5.86 16 4 C -0.08 0.01 5.35 -104.68 -0.56 -0.55 16 5 C -0.10 -0.03 9.05 -39.25 -0.36 -0.39 16 6 C -0.01 -0.01 5.88 -104.91 -0.62 -0.62 16 7 C -0.06 -0.05 5.88 -104.90 -0.62 -0.67 16 8 C -0.10 -0.06 9.43 -39.25 -0.37 -0.43 16 9 C -0.11 -0.05 8.59 -39.63 -0.34 -0.39 16 10 C -0.06 -0.01 5.29 -104.56 -0.55 -0.57 16 11 C -0.08 0.08 3.98 -90.96 -0.36 -0.28 16 12 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 13 C -0.12 0.04 7.38 -25.92 -0.19 -0.15 16 14 C 0.07 -0.06 5.21 -25.92 -0.14 -0.20 16 15 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 16 O -0.56 -0.26 13.67 -35.23 -0.48 -0.74 16 17 C -0.16 0.20 7.28 -25.92 -0.19 0.01 16 18 C -0.11 0.00 9.69 -39.63 -0.38 -0.39 16 19 C -0.10 -0.03 9.43 -39.25 -0.37 -0.40 16 20 C -0.14 -0.11 9.41 -39.18 -0.37 -0.48 16 21 C 0.11 0.15 7.29 -39.47 -0.29 -0.14 16 22 F -0.13 -0.31 17.26 2.25 0.04 -0.28 16 23 C -0.16 -0.04 8.64 -39.45 -0.34 -0.38 16 24 H 0.38 -0.77 8.70 45.56 0.40 -0.37 16 25 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 26 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 27 H -0.26 -0.24 7.01 56.52 0.40 0.16 16 28 H 0.14 -0.07 6.21 -52.48 -0.33 -0.40 16 29 H 0.13 -0.10 6.21 -52.49 -0.33 -0.43 16 30 H 0.13 -0.05 6.64 -52.49 -0.35 -0.40 16 31 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.09 0.07 7.72 -51.93 -0.40 -0.33 16 33 H 0.38 -1.35 9.12 45.56 0.42 -0.93 16 34 H 0.09 -0.06 6.30 -51.93 -0.33 -0.38 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 36 H 0.13 -0.21 8.05 -52.49 -0.42 -0.64 16 37 H 0.13 -0.16 6.21 -52.49 -0.33 -0.49 16 38 H 0.14 -0.10 6.21 -52.49 -0.33 -0.42 16 39 H 0.14 -0.15 4.82 -52.49 -0.25 -0.40 16 LS Contribution 324.98 15.07 4.90 4.90 Total: 0.00 -6.13 324.98 -10.56 -16.69 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -3.55 Total: -8.05 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -5.94 Total: -5.88 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -0.93 Total: -1.52 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.28 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.08 Total: -5.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -6.13 -10.56 -16.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.529 kcal (2) G-P(sol) polarization free energy of solvation -6.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds