Wall clock time and date at job start Mon Mar 8 2021 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47185 * 2 1 4 4 C 1.50698 * 109.47509 * 120.00273 * 2 1 3 5 5 C 1.38005 * 119.92355 * 64.72384 * 4 2 1 6 6 C 1.39371 * 119.92895 * 180.25931 * 5 4 2 7 7 C 1.48394 * 120.10861 * 180.02562 * 6 5 4 8 8 C 1.39339 * 120.11922 * 359.71650 * 7 6 5 9 9 C 1.38023 * 119.87454 * 179.74824 * 8 7 6 10 10 C 1.38324 * 120.11883 * 0.55602 * 9 8 7 11 11 C 1.50699 * 119.87532 * 179.72094 * 10 9 8 12 12 H 1.08994 * 112.84883 * 168.78418 * 11 10 9 13 13 C 1.53784 * 113.61383 * 299.98007 * 11 10 9 14 14 C 1.53776 * 87.08052 * 139.98241 * 13 11 10 15 15 H 1.09004 * 113.61497 * 89.11702 * 14 13 11 16 16 O 1.42904 * 113.61384 * 220.01502 * 14 13 11 17 17 C 1.53776 * 87.08202 * 334.56366 * 14 13 11 18 18 C 1.38317 * 120.24340 * 359.69930 * 10 9 8 19 19 C 1.38017 * 120.12506 * 0.02562 * 18 10 9 20 20 C 1.39280 * 119.78259 * 359.97438 * 6 5 4 21 21 C 1.38274 * 119.85090 * 0.02701 * 20 6 5 22 22 F 1.35098 * 119.96259 * 179.97438 * 21 20 6 23 23 C 1.38305 * 119.92885 * 244.99994 * 4 2 1 24 24 H 0.96707 * 114.00132 * 299.99279 * 1 2 3 25 25 H 1.09002 * 109.46909 * 240.00239 * 2 1 3 26 26 H 1.48499 * 110.00120 * 300.00574 * 3 2 1 27 27 H 1.48510 * 109.99754 * 61.32268 * 3 2 1 28 28 H 1.08004 * 120.04004 * 0.26114 * 5 4 2 29 29 H 1.08001 * 120.06111 * 0.02562 * 8 7 6 30 30 H 1.07997 * 119.94033 * 180.29972 * 9 8 7 31 31 H 1.09004 * 113.61139 * 254.53106 * 13 11 10 32 32 H 1.08994 * 113.61730 * 25.42715 * 13 11 10 33 33 H 0.96704 * 113.99977 * 179.97438 * 16 14 13 34 34 H 1.09000 * 113.62075 * 270.88368 * 17 14 13 35 35 H 1.09004 * 113.61446 * 139.97827 * 17 14 13 36 36 H 1.07999 * 119.93599 * 180.02562 * 18 10 9 37 37 H 1.07996 * 120.06217 * 179.97438 * 19 18 10 38 38 H 1.07996 * 120.07385 * 180.02562 * 20 6 5 39 39 H 1.07999 * 119.88889 * 359.71810 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6794 -2.0568 1.3991 6 6 2.1393 -2.7127 2.5395 7 6 1.8711 -4.1604 2.7247 8 6 1.1536 -4.8674 1.7619 9 6 0.9115 -6.2149 1.9368 10 6 1.3699 -6.8610 3.0707 11 6 1.0971 -8.3311 3.2591 12 1 1.6665 -8.7654 4.0808 13 6 -0.4002 -8.6801 3.2950 14 6 -0.0497 -9.9244 2.4622 15 1 0.2064 -10.7955 3.0653 16 8 -1.0048 -10.2168 1.4402 17 6 1.1747 -9.1439 1.9559 18 6 2.0781 -6.1629 4.0321 19 6 2.3308 -4.8164 3.8648 20 6 2.8524 -2.0052 3.5043 21 6 3.0997 -0.6565 3.3261 22 9 3.7907 0.0321 4.2607 23 6 2.6390 -0.0105 2.1907 24 1 -0.3934 0.4416 0.7651 25 1 1.7922 -0.5138 -0.8900 26 1 1.5613 2.4679 -1.2084 27 1 1.5878 2.4585 1.2244 28 1 1.1264 -2.6016 0.6482 29 1 0.7914 -4.3628 0.8784 30 1 0.3597 -6.7649 1.1890 31 1 -0.7704 -8.9130 4.2935 32 1 -1.0284 -7.9634 2.7662 33 1 -0.7896 -10.9983 0.9127 34 1 0.9772 -8.5541 1.0609 35 1 2.0761 -9.7513 1.8734 36 1 2.4340 -6.6724 4.9153 37 1 2.8835 -4.2722 4.6163 38 1 3.2114 -2.5089 4.3896 39 1 2.8339 1.0429 2.0544 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_13419902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:26 Heat of formation + Delta-G solvation = -43.335293 kcal Electronic energy + Delta-G solvation = -23154.226742 eV Core-core repulsion = 19522.523904 eV Total energy + Delta-G solvation = -3631.702838 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.00210 -41.38182 -40.58569 -39.14100 -37.69331 -36.08108 -33.79781 -32.56134 -31.62677 -30.27892 -27.12630 -26.69456 -26.14694 -24.25296 -23.54822 -22.48843 -21.71243 -20.22224 -19.20357 -18.67525 -17.83637 -17.62462 -17.32810 -16.94079 -16.75967 -16.48606 -16.13098 -16.05262 -15.71312 -15.40466 -15.26646 -14.70625 -14.40315 -14.31902 -14.13801 -14.02887 -13.60129 -13.42536 -13.30559 -13.22886 -12.83617 -12.50175 -12.36490 -12.10957 -12.02680 -11.88963 -11.60539 -11.33630 -10.73609 -10.69459 -10.60174 -9.93389 -9.88330 -9.04466 -4.95988 -0.52900 0.00567 0.42976 0.68666 1.24106 1.55601 1.90827 2.30610 2.88913 2.99657 3.27657 3.30799 3.39486 3.54204 3.61661 3.64855 3.81172 3.90724 3.93630 3.98616 4.02099 4.07219 4.08538 4.16174 4.36276 4.41198 4.49765 4.62268 4.63631 4.77908 4.79912 4.82268 4.90785 4.97114 4.99772 5.03404 5.09204 5.15867 5.19711 5.34425 5.43664 5.61198 5.69062 5.72357 5.97844 6.42241 6.89324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.077 4.077 3 Si 0.758 3.242 4 C -0.082 4.082 5 C -0.100 4.100 6 C -0.016 4.016 7 C -0.069 4.069 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.067 4.067 11 C -0.070 4.070 12 H 0.117 0.883 13 C -0.126 4.126 14 C 0.074 3.926 15 H 0.100 0.900 16 O -0.583 6.583 17 C -0.160 4.160 18 C -0.120 4.120 19 C -0.110 4.110 20 C -0.147 4.147 21 C 0.096 3.904 22 F -0.143 7.143 23 C -0.157 4.157 24 H 0.387 0.613 25 H 0.136 0.864 26 H -0.297 1.297 27 H -0.285 1.285 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.395 0.605 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -3.433 0.241 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.187 4.187 3 Si 0.664 3.336 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.016 4.016 7 C -0.069 4.069 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.067 4.067 11 C -0.088 4.088 12 H 0.135 0.865 13 C -0.163 4.163 14 C 0.015 3.985 15 H 0.118 0.882 16 O -0.391 6.391 17 C -0.197 4.197 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.165 4.165 21 C 0.077 3.923 22 F -0.121 7.121 23 C -0.175 4.175 24 H 0.237 0.763 25 H 0.154 0.846 26 H -0.224 1.224 27 H -0.211 1.211 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.433 -2.366 -0.024 3.394 hybrid contribution -0.726 -0.311 0.538 0.956 sum 1.707 -2.677 0.514 3.217 Atomic orbital electron populations 1.86593 1.17997 1.80325 1.50193 1.25175 0.83702 1.11518 0.98260 0.94031 0.90546 0.72404 0.76628 1.20050 0.97722 0.94224 0.96278 1.21304 0.99186 0.93875 0.97393 1.18667 0.96557 0.92449 0.93928 1.18768 1.00460 0.91527 0.96173 1.21394 0.97849 0.94385 0.99036 1.21113 1.00466 0.94365 0.98082 1.19938 0.96916 0.95602 0.94283 1.21365 0.96989 0.90787 0.99686 0.86510 1.23183 0.95763 0.96921 1.00470 1.23461 0.88531 0.96765 0.89694 0.88214 1.86494 1.50604 1.52563 1.49461 1.23787 0.99458 0.99063 0.97425 1.21254 0.98791 0.94078 0.99638 1.21459 0.99376 0.94994 0.96974 1.21388 1.01191 0.92476 1.01473 1.17574 0.96282 0.90393 0.88027 1.91518 1.77066 1.79526 1.64024 1.21230 1.01185 1.01447 0.93638 0.76338 0.84649 1.22437 1.21128 0.83911 0.84623 0.85244 0.90009 0.90508 0.75543 0.89683 0.89938 0.83879 0.84293 0.83073 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.63 12.83 -148.98 -1.91 -2.55 16 2 C -0.08 0.14 2.80 71.24 0.20 0.34 16 3 Si 0.76 -1.64 29.87 68.60 2.05 0.41 16 4 C -0.08 0.02 5.35 -19.90 -0.11 -0.08 16 5 C -0.10 -0.08 9.05 22.49 0.20 0.12 16 6 C -0.02 -0.03 5.88 -20.05 -0.12 -0.15 16 7 C -0.07 -0.15 5.88 -20.04 -0.12 -0.27 16 8 C -0.11 -0.19 9.43 22.48 0.21 0.02 16 9 C -0.12 -0.18 8.59 22.24 0.19 0.01 16 10 C -0.07 -0.03 5.29 -19.83 -0.10 -0.13 16 11 C -0.07 0.17 3.98 -11.01 -0.04 0.13 16 12 H 0.12 -0.64 8.09 -2.39 -0.02 -0.66 16 13 C -0.13 0.07 7.38 31.12 0.23 0.30 16 14 C 0.07 -0.15 5.21 31.12 0.16 0.01 16 15 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 16 O -0.58 -0.58 13.67 -148.98 -2.04 -2.62 16 17 C -0.16 0.43 7.28 31.12 0.23 0.66 16 18 C -0.12 0.03 9.69 22.24 0.22 0.25 16 19 C -0.11 -0.07 9.43 22.48 0.21 0.14 16 20 C -0.15 -0.26 9.41 22.53 0.21 -0.04 16 21 C 0.10 0.28 7.29 22.34 0.16 0.44 16 22 F -0.14 -0.73 17.26 44.97 0.78 0.05 16 23 C -0.16 -0.08 8.64 22.35 0.19 0.11 16 24 H 0.39 -1.53 8.70 -74.05 -0.64 -2.18 16 25 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 26 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 27 H -0.28 -0.60 7.01 99.48 0.70 0.09 16 28 H 0.14 -0.14 6.21 -2.91 -0.02 -0.16 16 29 H 0.14 -0.14 6.21 -2.91 -0.02 -0.16 16 30 H 0.13 0.04 6.64 -2.91 -0.02 0.02 16 31 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.08 0.21 7.72 -2.39 -0.02 0.19 16 33 H 0.39 -2.84 9.12 -74.05 -0.68 -3.52 16 34 H 0.08 -0.06 6.30 -2.39 -0.02 -0.08 16 35 H 0.08 -0.38 8.14 -2.38 -0.02 -0.39 16 36 H 0.14 -0.63 8.05 -2.91 -0.02 -0.66 16 37 H 0.14 -0.39 6.21 -2.91 -0.02 -0.41 16 38 H 0.15 -0.20 6.21 -2.91 -0.02 -0.22 16 39 H 0.15 -0.34 4.82 -2.91 -0.01 -0.36 16 Total: 0.00 -14.12 324.98 0.63 -13.49 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -0.17 Total: -10.64 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 1.93 Total: 1.86 kcal Atomic # 8 Polarization: -1.22 SS G_CDS: -3.95 Total: -5.17 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.78 Total: 0.05 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: 2.05 Total: 0.41 kcal Total: -14.12 0.63 -13.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_13419902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.843 kcal (2) G-P(sol) polarization free energy of solvation -14.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds