Wall clock time and date at job start Mon Mar 8 2021 07:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47819 * 120.00245 * 2 1 4 4 C 1.39525 * 120.12368 * 313.46948 * 3 2 1 5 5 C 1.37998 * 119.90265 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.91559 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47308 * 299.97971 * 6 5 4 8 8 Si 1.86307 * 109.47405 * 179.97438 * 6 5 4 9 9 H 1.48496 * 109.46847 * 60.00023 * 8 6 5 10 10 H 1.48493 * 109.47051 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46958 * 299.99989 * 8 6 5 12 12 C 1.38291 * 120.17339 * 359.97438 * 5 4 3 13 13 C 1.38584 * 120.25663 * 0.02562 * 12 5 4 14 14 F 1.35099 * 119.95652 * 179.97438 * 13 12 5 15 15 C 1.38182 * 120.09125 * 359.97438 * 13 12 5 16 16 Si 1.86801 * 119.99840 * 179.97438 * 2 1 3 17 17 C 1.86310 * 109.47207 * 273.19303 * 16 2 1 18 18 C 1.86301 * 109.47161 * 33.19369 * 16 2 1 19 19 C 1.86301 * 109.47057 * 153.19563 * 16 2 1 20 20 H 1.08000 * 120.00604 * 180.02562 * 1 2 3 21 21 H 1.08006 * 120.00238 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.04783 * 359.97438 * 4 3 2 23 23 H 1.09007 * 109.47212 * 59.97926 * 6 5 4 24 24 H 0.96706 * 113.99572 * 299.99642 * 7 6 5 25 25 H 1.07997 * 119.87252 * 179.72454 * 12 5 4 26 26 H 1.07999 * 120.08474 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.46777 * 60.00169 * 17 16 2 28 28 H 1.09003 * 109.46992 * 180.02562 * 17 16 2 29 29 H 1.09004 * 109.46647 * 300.00308 * 17 16 2 30 30 H 1.08991 * 109.46935 * 59.99751 * 18 16 2 31 31 H 1.08997 * 109.47084 * 180.02562 * 18 16 2 32 32 H 1.09001 * 109.46681 * 299.99882 * 18 16 2 33 33 H 1.08993 * 109.47280 * 65.84031 * 19 16 2 34 34 H 1.08999 * 109.46836 * 185.84164 * 19 16 2 35 35 H 1.09003 * 109.46925 * 305.83407 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 1.6959 2.3017 -0.8758 5 6 2.3888 3.4951 -0.8716 6 6 1.9903 4.5989 -1.8170 7 8 2.1054 4.1368 -3.1644 8 14 3.1103 6.0664 -1.5659 9 1 4.5155 5.6682 -1.8341 10 1 2.7171 7.1542 -2.4971 11 1 2.9904 6.5466 -0.1658 12 6 3.4472 3.6812 -0.0013 13 6 3.8195 2.6712 0.8716 14 9 4.8548 2.8594 1.7189 15 6 3.1332 1.4719 0.8765 16 14 2.2596 -1.6178 0.0007 17 6 2.4853 -2.2038 1.7548 18 6 1.2971 -2.8909 -0.9603 19 6 3.9278 -1.3721 -0.7915 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5401 0.9353 -0.0004 22 1 0.8694 2.1586 -1.5561 23 1 0.9588 4.8912 -1.6201 24 1 2.9986 3.8593 -3.4100 25 1 3.9889 4.6155 -0.0052 26 1 3.4231 0.6850 1.5570 27 1 1.5093 -2.3475 2.2183 28 1 3.0307 -3.1475 1.7552 29 1 3.0484 -1.4588 2.3170 30 1 1.1650 -2.5481 -1.9864 31 1 1.8419 -3.8350 -0.9595 32 1 0.3211 -3.0346 -0.4967 33 1 4.5294 -0.7065 -0.1726 34 1 4.4307 -2.3346 -0.8852 35 1 3.7991 -0.9316 -1.7802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_14924794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:55:23 Heat of formation + Delta-G solvation = -84.256840 kcal Electronic energy + Delta-G solvation = -16772.200508 eV Core-core repulsion = 14001.178448 eV Total energy + Delta-G solvation = -2771.022059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.84350 -40.55959 -37.76290 -35.03639 -32.33720 -30.56383 -29.58105 -28.48266 -28.38409 -26.96315 -24.52627 -22.73041 -20.49976 -18.74517 -17.61283 -17.38567 -17.05514 -16.67988 -16.31206 -16.08682 -15.49424 -14.90536 -14.71519 -14.27038 -14.16555 -14.01608 -13.92679 -13.46342 -13.38508 -13.28666 -13.16581 -13.13737 -13.00394 -12.70447 -12.28974 -12.04659 -11.81397 -11.47768 -11.04477 -10.93880 -10.66697 -10.36834 -9.78485 -9.43340 -0.12415 0.11993 1.03471 1.07438 1.38562 1.46225 1.63526 1.79898 1.86157 2.01593 2.44952 2.63617 3.13741 3.35585 3.53505 3.78205 3.90577 4.13129 4.19703 4.42013 4.57816 4.64717 4.65303 4.68476 4.70063 4.72547 4.74733 4.76623 4.94421 4.98165 5.16405 5.27608 5.38060 5.41750 5.49167 5.52598 5.63843 5.87320 6.45630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.378 4.378 3 C 0.000 4.000 4 C -0.100 4.100 5 C -0.088 4.088 6 C -0.079 4.079 7 O -0.536 6.536 8 Si 0.945 3.055 9 H -0.250 1.250 10 H -0.251 1.251 11 H -0.249 1.249 12 C -0.170 4.170 13 C 0.112 3.888 14 F -0.136 7.136 15 C -0.151 4.151 16 Si 1.050 2.950 17 C -0.449 4.449 18 C -0.448 4.448 19 C -0.448 4.448 20 H 0.108 0.892 21 H 0.096 0.904 22 H 0.135 0.865 23 H 0.122 0.878 24 H 0.378 0.622 25 H 0.131 0.869 26 H 0.140 0.860 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -1.760 -0.512 2.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.419 4.419 3 C 0.000 4.000 4 C -0.118 4.118 5 C -0.088 4.088 6 C -0.190 4.190 7 O -0.341 6.341 8 Si 0.767 3.233 9 H -0.173 1.173 10 H -0.175 1.175 11 H -0.173 1.173 12 C -0.189 4.189 13 C 0.093 3.907 14 F -0.115 7.115 15 C -0.170 4.170 16 Si 1.241 2.759 17 C -0.557 4.557 18 C -0.556 4.556 19 C -0.556 4.556 20 H 0.126 0.874 21 H 0.115 0.885 22 H 0.153 0.847 23 H 0.140 0.860 24 H 0.225 0.775 25 H 0.149 0.851 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.215 -0.825 -0.357 1.511 hybrid contribution 0.429 -0.293 0.247 0.575 sum -0.786 -1.118 -0.109 1.371 Atomic orbital electron populations 1.24341 0.95372 1.02232 0.93494 1.27983 1.01111 1.07752 1.05076 1.18813 0.93759 0.93535 0.93902 1.21228 0.99956 0.91667 0.98956 1.20076 0.95170 0.96653 0.96928 1.24979 1.09420 1.01683 0.82937 1.86527 1.35231 1.86554 1.25750 0.85732 0.78769 0.77426 0.81333 1.17307 1.17451 1.17287 1.21032 0.99859 0.99530 0.98471 1.17428 0.87243 0.94942 0.91127 1.91532 1.55661 1.95612 1.68690 1.21252 0.97071 0.96972 1.01684 0.78355 0.66393 0.63368 0.67746 1.26149 1.04880 1.06140 1.18488 1.26129 1.08721 1.11849 1.08936 1.26124 1.17042 1.04789 1.07614 0.87394 0.88526 0.84729 0.86000 0.77492 0.85096 0.84259 0.91051 0.90872 0.91214 0.90944 0.90817 0.91142 0.91148 0.91027 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 13.31 28.82 0.38 0.58 16 2 C -0.38 0.41 4.41 -37.57 -0.17 0.24 16 3 C 0.00 0.00 5.26 -105.02 -0.55 -0.55 16 4 C -0.10 -0.04 8.89 -39.19 -0.35 -0.39 16 5 C -0.09 -0.04 5.38 -104.69 -0.56 -0.60 16 6 C -0.08 0.06 2.82 36.00 0.10 0.16 16 7 O -0.54 0.10 12.76 -35.23 -0.45 -0.35 16 8 Si 0.94 -0.47 25.06 -169.99 -4.26 -4.73 16 9 H -0.25 0.03 7.11 56.52 0.40 0.43 16 10 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 11 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 12 C -0.17 -0.21 8.65 -39.43 -0.34 -0.55 16 13 C 0.11 0.22 7.29 -39.47 -0.29 -0.06 16 14 F -0.14 -0.42 17.26 2.25 0.04 -0.38 16 15 C -0.15 -0.13 8.64 -39.13 -0.34 -0.47 16 16 Si 1.05 -2.68 11.16 -169.99 -1.90 -4.57 16 17 C -0.45 0.79 8.65 101.05 0.87 1.67 16 18 C -0.45 0.93 8.56 101.05 0.87 1.80 16 19 C -0.45 0.56 8.63 101.05 0.87 1.43 16 20 H 0.11 -0.35 7.37 -52.49 -0.39 -0.73 16 21 H 0.10 -0.15 7.84 -52.48 -0.41 -0.56 16 22 H 0.13 -0.03 7.94 -52.49 -0.42 -0.45 16 23 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 24 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 25 H 0.13 0.04 4.86 -52.49 -0.26 -0.21 16 26 H 0.14 -0.10 6.98 -52.49 -0.37 -0.46 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.11 7.61 -51.93 -0.39 -0.51 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.06 7.48 -51.93 -0.39 -0.44 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 LS Contribution 300.26 15.07 4.52 4.52 Total: 0.00 -4.02 300.26 -5.86 -9.88 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -4.31 Total: -7.61 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.50 Total: 3.24 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -0.45 Total: -0.35 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.38 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: -6.16 Total: -9.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -4.02 -5.86 -9.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_14924794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.381 kcal (2) G-P(sol) polarization free energy of solvation -4.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds