Wall clock time and date at job start Mon Mar 8 2021 07:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47819 * 120.00245 * 2 1 4 4 C 1.39525 * 120.12368 * 313.46948 * 3 2 1 5 5 C 1.37998 * 119.90265 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.91559 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47308 * 299.97971 * 6 5 4 8 8 Si 1.86307 * 109.47405 * 179.97438 * 6 5 4 9 9 H 1.48496 * 109.46847 * 60.00023 * 8 6 5 10 10 H 1.48493 * 109.47051 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46958 * 299.99989 * 8 6 5 12 12 C 1.38291 * 120.17339 * 359.97438 * 5 4 3 13 13 C 1.38584 * 120.25663 * 0.02562 * 12 5 4 14 14 F 1.35099 * 119.95652 * 179.97438 * 13 12 5 15 15 C 1.38182 * 120.09125 * 359.97438 * 13 12 5 16 16 Si 1.86801 * 119.99840 * 179.97438 * 2 1 3 17 17 C 1.86310 * 109.47207 * 273.19303 * 16 2 1 18 18 C 1.86301 * 109.47161 * 33.19369 * 16 2 1 19 19 C 1.86301 * 109.47057 * 153.19563 * 16 2 1 20 20 H 1.08000 * 120.00604 * 180.02562 * 1 2 3 21 21 H 1.08006 * 120.00238 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.04783 * 359.97438 * 4 3 2 23 23 H 1.09007 * 109.47212 * 59.97926 * 6 5 4 24 24 H 0.96706 * 113.99572 * 299.99642 * 7 6 5 25 25 H 1.07997 * 119.87252 * 179.72454 * 12 5 4 26 26 H 1.07999 * 120.08474 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.46777 * 60.00169 * 17 16 2 28 28 H 1.09003 * 109.46992 * 180.02562 * 17 16 2 29 29 H 1.09004 * 109.46647 * 300.00308 * 17 16 2 30 30 H 1.08991 * 109.46935 * 59.99751 * 18 16 2 31 31 H 1.08997 * 109.47084 * 180.02562 * 18 16 2 32 32 H 1.09001 * 109.46681 * 299.99882 * 18 16 2 33 33 H 1.08993 * 109.47280 * 65.84031 * 19 16 2 34 34 H 1.08999 * 109.46836 * 185.84164 * 19 16 2 35 35 H 1.09003 * 109.46925 * 305.83407 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 1.6959 2.3017 -0.8758 5 6 2.3888 3.4951 -0.8716 6 6 1.9903 4.5989 -1.8170 7 8 2.1054 4.1368 -3.1644 8 14 3.1103 6.0664 -1.5659 9 1 4.5155 5.6682 -1.8341 10 1 2.7171 7.1542 -2.4971 11 1 2.9904 6.5466 -0.1658 12 6 3.4472 3.6812 -0.0013 13 6 3.8195 2.6712 0.8716 14 9 4.8548 2.8594 1.7189 15 6 3.1332 1.4719 0.8765 16 14 2.2596 -1.6178 0.0007 17 6 2.4853 -2.2038 1.7548 18 6 1.2971 -2.8909 -0.9603 19 6 3.9278 -1.3721 -0.7915 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5401 0.9353 -0.0004 22 1 0.8694 2.1586 -1.5561 23 1 0.9588 4.8912 -1.6201 24 1 2.9986 3.8593 -3.4100 25 1 3.9889 4.6155 -0.0052 26 1 3.4231 0.6850 1.5570 27 1 1.5093 -2.3475 2.2183 28 1 3.0307 -3.1475 1.7552 29 1 3.0484 -1.4588 2.3170 30 1 1.1650 -2.5481 -1.9864 31 1 1.8419 -3.8350 -0.9595 32 1 0.3211 -3.0346 -0.4967 33 1 4.5294 -0.7065 -0.1726 34 1 4.4307 -2.3346 -0.8852 35 1 3.7991 -0.9316 -1.7802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_14924794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:55:23 Heat of formation + Delta-G solvation = -75.191568 kcal Electronic energy + Delta-G solvation = -16771.807408 eV Core-core repulsion = 14001.178448 eV Total energy + Delta-G solvation = -2770.628960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.00858 -40.57165 -37.72568 -34.97584 -32.34408 -30.53741 -29.42737 -28.30524 -28.24118 -26.94699 -24.51894 -22.75621 -20.44725 -18.74380 -17.65070 -17.42157 -17.08422 -16.79023 -16.29723 -16.07885 -15.46179 -14.87950 -14.67449 -14.26920 -14.06038 -13.86428 -13.79434 -13.34732 -13.27703 -13.16803 -13.07618 -13.05131 -12.94170 -12.67156 -12.30598 -12.05242 -11.83682 -11.37019 -10.92307 -10.78600 -10.59237 -10.29318 -9.82760 -9.42289 -0.13094 0.06369 1.10903 1.15014 1.39467 1.46570 1.80299 1.85865 1.99170 2.17930 2.52865 2.70992 3.08587 3.44672 3.54203 3.77528 3.93527 4.10727 4.19126 4.48136 4.66351 4.78630 4.81377 4.82213 4.85539 4.85945 4.87828 4.90072 4.94783 4.98854 5.15829 5.29803 5.44800 5.57261 5.64244 5.67984 5.71991 5.88559 6.64131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.395 4.395 3 C -0.001 4.001 4 C -0.105 4.105 5 C -0.087 4.087 6 C -0.073 4.073 7 O -0.547 6.547 8 Si 0.972 3.028 9 H -0.256 1.256 10 H -0.267 1.267 11 H -0.261 1.261 12 C -0.181 4.181 13 C 0.092 3.908 14 F -0.148 7.148 15 C -0.157 4.157 16 Si 1.107 2.893 17 C -0.462 4.462 18 C -0.457 4.457 19 C -0.464 4.464 20 H 0.126 0.874 21 H 0.095 0.905 22 H 0.143 0.857 23 H 0.134 0.866 24 H 0.390 0.610 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -2.454 -0.767 3.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.435 4.435 3 C -0.002 4.002 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.184 4.184 7 O -0.354 6.354 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.192 1.192 11 H -0.185 1.185 12 C -0.200 4.200 13 C 0.073 3.927 14 F -0.126 7.126 15 C -0.176 4.176 16 Si 1.295 2.705 17 C -0.569 4.569 18 C -0.565 4.565 19 C -0.571 4.571 20 H 0.144 0.856 21 H 0.113 0.887 22 H 0.161 0.839 23 H 0.151 0.849 24 H 0.239 0.761 25 H 0.152 0.848 26 H 0.168 0.832 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.040 -1.516 -0.615 2.615 hybrid contribution 0.687 -0.074 0.314 0.759 sum -1.353 -1.590 -0.302 2.109 Atomic orbital electron populations 1.24559 0.95236 1.03108 0.92232 1.28243 1.01538 1.07637 1.06045 1.19027 0.93536 0.94176 0.93416 1.21403 1.00145 0.91685 0.99080 1.20184 0.94762 0.97030 0.96765 1.24942 1.09943 1.00880 0.82599 1.86497 1.36514 1.86562 1.25780 0.85353 0.78321 0.76754 0.79900 1.17984 1.19226 1.18537 1.21152 1.00375 0.99651 0.98778 1.17674 0.87556 0.95825 0.91643 1.91496 1.56260 1.95744 1.69142 1.21430 0.97181 0.96905 1.02063 0.77471 0.64575 0.62060 0.66424 1.26298 1.05017 1.06235 1.19321 1.26216 1.09228 1.12018 1.09017 1.26340 1.18504 1.04705 1.07507 0.85564 0.88710 0.83932 0.84856 0.76095 0.84774 0.83201 0.90800 0.90732 0.91523 0.91037 0.90726 0.90467 0.91828 0.90810 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.50 13.31 66.67 0.89 1.39 16 2 C -0.39 1.09 4.41 23.66 0.10 1.19 16 3 C 0.00 0.00 5.26 -20.12 -0.11 -0.11 16 4 C -0.11 -0.08 8.89 22.52 0.20 0.12 16 5 C -0.09 -0.09 5.38 -19.91 -0.11 -0.20 16 6 C -0.07 0.11 2.82 71.24 0.20 0.31 16 7 O -0.55 0.41 12.76 -148.98 -1.90 -1.49 16 8 Si 0.97 -0.46 25.06 68.60 1.72 1.25 16 9 H -0.26 -0.09 7.11 99.48 0.71 0.62 16 10 H -0.27 -0.59 7.11 99.48 0.71 0.11 16 11 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 12 C -0.18 -0.60 8.65 22.36 0.19 -0.40 16 13 C 0.09 0.47 7.29 22.34 0.16 0.63 16 14 F -0.15 -1.13 17.26 44.97 0.78 -0.35 16 15 C -0.16 -0.37 8.64 22.56 0.19 -0.18 16 16 Si 1.11 -6.19 11.16 68.60 0.77 -5.43 16 17 C -0.46 1.81 8.65 113.37 0.98 2.79 16 18 C -0.46 2.37 8.56 113.37 0.97 3.34 16 19 C -0.46 1.01 8.63 113.37 0.98 1.99 16 20 H 0.13 -1.04 7.37 -2.91 -0.02 -1.06 16 21 H 0.09 -0.38 7.84 -2.91 -0.02 -0.40 16 22 H 0.14 -0.16 7.94 -2.91 -0.02 -0.18 16 23 H 0.13 -0.52 7.96 -2.38 -0.02 -0.54 16 24 H 0.39 -2.59 8.70 -74.05 -0.64 -3.24 16 25 H 0.13 0.24 4.86 -2.91 -0.01 0.22 16 26 H 0.15 -0.12 6.98 -2.91 -0.02 -0.14 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.07 -0.21 7.61 -2.38 -0.02 -0.23 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.08 -0.49 7.69 -2.39 -0.02 -0.51 16 33 H 0.06 -0.05 7.48 -2.39 -0.02 -0.07 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 Total: 0.00 -9.14 300.26 7.21 -1.94 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: 1.19 Total: -6.80 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.66 Total: 10.89 kcal Atomic # 8 Polarization: 0.41 SS G_CDS: -1.90 Total: -1.49 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.78 Total: -0.35 kcal Atomic # 14 Polarization: -6.66 SS G_CDS: 2.49 Total: -4.17 kcal Total: -9.14 7.21 -1.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_14924794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.256 kcal (2) G-P(sol) polarization free energy of solvation -9.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds