Wall clock time and date at job start Mon Mar 8 2021 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46978 * 240.00462 * 2 1 3 5 5 Si 1.86299 * 109.47374 * 120.00118 * 2 1 3 6 6 C 1.86301 * 109.47106 * 300.00202 * 5 2 1 7 7 C 1.86295 * 109.47206 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47052 * 60.00165 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.50699 * 109.46785 * 179.97438 * 9 8 5 11 11 C 1.33050 * 122.54665 * 0.02573 * 10 9 8 12 12 S 1.75808 * 109.93503 * 179.97438 * 11 10 9 13 13 C 1.75852 * 91.15045 * 359.97438 * 12 11 10 14 14 C 1.34568 * 109.54046 * 359.75704 * 13 12 11 15 15 C 1.48372 * 122.77201 * 180.26025 * 14 13 12 16 16 C 1.39354 * 120.10663 * 310.19000 * 15 14 13 17 17 C 1.38043 * 119.92493 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.92067 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47286 * 299.99419 * 18 17 16 20 20 Si 1.86300 * 109.46877 * 179.97438 * 18 17 16 21 21 H 1.48502 * 109.46925 * 60.00189 * 20 18 17 22 22 H 1.48498 * 109.47190 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47574 * 300.00151 * 20 18 17 24 24 C 1.38267 * 120.14989 * 0.02562 * 17 16 15 25 25 C 1.38566 * 120.22325 * 359.97438 * 24 17 16 26 26 F 1.35100 * 119.96607 * 179.97438 * 25 24 17 27 27 C 1.38220 * 120.07089 * 359.71871 * 25 24 17 28 28 H 1.09000 * 109.47140 * 299.99612 * 1 2 3 29 29 H 1.09001 * 109.46922 * 59.99912 * 1 2 3 30 30 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47108 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47367 * 299.99815 * 3 2 1 33 33 H 1.09004 * 109.47368 * 60.00217 * 3 2 1 34 34 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 35 35 H 1.08992 * 109.47513 * 60.00211 * 4 2 1 36 36 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 38 38 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 39 39 H 1.08996 * 109.46889 * 59.99853 * 6 5 2 40 40 H 1.09000 * 109.47314 * 300.00273 * 7 5 2 41 41 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 42 42 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 43 43 H 1.09005 * 109.47016 * 299.99548 * 9 8 5 44 44 H 1.08999 * 109.47156 * 59.99587 * 9 8 5 45 45 H 1.08008 * 125.03168 * 359.94830 * 11 10 9 46 46 H 1.07999 * 125.23354 * 180.02562 * 13 12 11 47 47 H 1.08000 * 120.03431 * 359.97346 * 16 15 14 48 48 H 1.09005 * 109.47088 * 59.99899 * 18 17 16 49 49 H 0.96701 * 114.00071 * 300.00227 * 19 18 17 50 50 H 1.08000 * 119.88603 * 179.97438 * 24 17 16 51 51 H 1.07996 * 120.07661 * 180.28121 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8789 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0287 -3.1815 2.6518 10 6 1.4713 -4.5778 2.5490 11 6 0.7098 -4.9714 1.5315 12 16 0.2459 -6.6536 1.7455 13 6 1.1396 -6.7446 3.2573 14 6 1.7202 -5.5570 3.5091 15 6 2.5531 -5.3091 4.7117 16 6 2.0781 -5.6570 5.9747 17 6 2.8558 -5.4242 7.0912 18 6 2.3418 -5.8000 8.4571 19 8 1.1320 -5.0876 8.7234 20 14 3.6170 -5.3616 9.7426 21 1 3.8828 -3.9013 9.6983 22 1 3.1103 -5.7313 11.0887 23 1 4.8740 -6.1022 9.4658 24 6 4.1049 -4.8460 6.9591 25 6 4.5833 -4.4976 5.7062 26 9 5.8043 -3.9326 5.5833 27 6 3.8149 -4.7324 4.5816 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 1.8931 -0.5142 3.9322 38 1 1.8934 1.0276 3.0423 39 1 0.4401 -0.0001 3.0422 40 1 4.3770 -1.3929 0.6306 41 1 4.3777 0.1487 1.5205 42 1 4.3774 -1.3931 2.4104 43 1 3.1176 -3.2253 2.6757 44 1 1.6639 -2.7113 3.5651 45 1 0.4191 -4.3494 0.6977 46 1 1.2147 -7.6202 3.8850 47 1 1.1022 -6.1075 6.0800 48 1 2.1470 -6.8720 8.4898 49 1 1.2309 -4.1257 8.7104 50 1 4.7096 -4.6654 7.8355 51 1 4.1895 -4.4651 3.6046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_15607708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:07:47 Heat of formation + Delta-G solvation = -121.813322 kcal Electronic energy + Delta-G solvation = -31349.811923 eV Core-core repulsion = 27185.264830 eV Total energy + Delta-G solvation = -4164.547093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 382.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.93480 -41.09639 -39.48680 -37.74827 -37.07715 -36.87497 -33.06308 -32.11218 -30.33660 -29.48393 -29.13044 -27.89953 -27.78971 -27.42322 -26.96997 -24.92180 -22.98752 -22.48413 -20.47499 -19.72028 -19.07628 -18.37517 -17.85073 -17.58767 -17.28057 -17.08841 -16.71046 -16.44906 -16.31589 -16.13571 -15.90350 -15.80480 -14.93201 -14.89963 -14.89448 -14.72128 -14.39332 -14.12126 -14.00668 -13.72000 -13.68889 -13.59560 -13.43182 -13.37588 -13.27420 -13.18078 -12.97852 -12.97110 -12.92782 -12.73361 -12.45269 -12.30412 -12.13504 -11.98211 -11.88044 -11.85105 -11.71070 -11.64096 -11.38325 -10.64217 -10.45521 -10.32454 -10.12080 -9.86344 -9.56724 -9.15508 -0.33029 -0.00528 0.20251 0.67322 1.01178 1.03167 1.34915 1.36087 1.42180 1.55646 1.69132 1.82889 2.00468 2.37378 2.40450 3.02296 3.28764 3.41542 3.63843 3.77662 3.90767 3.99523 4.02577 4.07746 4.07879 4.13280 4.27248 4.32763 4.38586 4.42646 4.54906 4.59459 4.64128 4.69343 4.69465 4.69775 4.77583 4.81317 4.81492 4.83713 4.88750 4.95846 5.03577 5.06278 5.06887 5.11995 5.18240 5.28858 5.30893 5.37483 5.37964 5.42665 5.50118 5.56408 5.61931 5.70791 6.41715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.146 3.854 10 C -0.104 4.104 11 C -0.177 4.177 12 S 0.117 5.883 13 C -0.196 4.196 14 C -0.066 4.066 15 C 0.006 3.994 16 C -0.086 4.086 17 C -0.087 4.087 18 C -0.079 4.079 19 O -0.535 6.535 20 Si 0.944 3.056 21 H -0.249 1.249 22 H -0.250 1.250 23 H -0.248 1.248 24 C -0.161 4.161 25 C 0.112 3.888 26 F -0.134 7.134 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.178 0.822 46 H 0.169 0.831 47 H 0.139 0.861 48 H 0.124 0.876 49 H 0.378 0.622 50 H 0.134 0.866 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -0.028 0.449 0.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.068 3.932 10 C -0.115 4.115 11 C -0.312 4.312 12 S 0.383 5.617 13 C -0.332 4.332 14 C -0.079 4.079 15 C 0.003 3.997 16 C -0.105 4.105 17 C -0.088 4.088 18 C -0.190 4.190 19 O -0.340 6.340 20 Si 0.766 3.234 21 H -0.173 1.173 22 H -0.174 1.174 23 H -0.172 1.172 24 C -0.180 4.180 25 C 0.093 3.907 26 F -0.112 7.112 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.195 0.805 46 H 0.187 0.813 47 H 0.157 0.843 48 H 0.142 0.858 49 H 0.225 0.775 50 H 0.152 0.848 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.092 -1.656 0.083 1.985 hybrid contribution 1.321 1.958 0.411 2.397 sum 0.228 0.302 0.494 0.622 Atomic orbital electron populations 1.21512 0.93778 1.01981 1.01834 1.25765 1.00687 1.02639 1.12603 1.21558 1.00803 0.94881 1.02184 1.21512 1.00645 1.00187 0.96764 0.76707 0.63069 0.53253 0.65093 1.27032 1.07072 1.09511 1.17726 1.27041 1.24985 1.04844 1.04530 1.85292 1.79400 1.46053 1.47419 1.20580 0.97498 0.87941 0.87143 1.18659 1.01907 0.95896 0.95069 1.25381 1.04158 0.97786 1.03892 1.84490 1.50424 1.08733 1.18020 1.25754 1.04124 1.01474 1.01861 1.17374 1.01569 0.93265 0.95741 1.18227 0.92312 0.97155 0.91971 1.21151 1.00234 0.99109 0.90008 1.20092 0.93501 0.98449 0.96730 1.24984 0.95439 1.01221 0.97371 1.86539 1.31067 1.22972 1.93378 0.85746 0.77434 0.81551 0.78664 1.17257 1.17356 1.17199 1.21100 0.97348 1.02721 0.96805 1.17389 0.81587 0.97898 0.93862 1.91548 1.40581 1.82346 1.96757 1.21288 0.94485 1.02126 0.98423 0.92675 0.92776 0.92195 0.92499 0.92463 0.92495 0.92195 0.92775 0.92683 0.91463 0.90656 0.90794 0.90791 0.90618 0.91465 0.91403 0.91259 0.80497 0.81309 0.84311 0.85816 0.77461 0.84819 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 7.85 37.16 0.29 0.33 16 2 C -0.37 0.24 0.53 -90.62 -0.05 0.19 16 3 C -0.14 0.11 7.85 37.16 0.29 0.40 16 4 C -0.13 0.04 7.85 37.16 0.29 0.33 16 5 Si 1.29 -1.63 8.45 -169.99 -1.44 -3.07 16 6 C -0.51 0.39 8.50 101.05 0.86 1.25 16 7 C -0.51 0.38 8.50 101.05 0.86 1.24 16 8 O -0.62 0.07 7.42 -35.23 -0.26 -0.19 16 9 C 0.15 -0.03 4.47 36.01 0.16 0.13 16 10 C -0.10 -0.07 5.79 -106.00 -0.61 -0.69 16 11 C -0.18 -0.11 10.41 28.93 0.30 0.19 16 12 S 0.12 0.00 23.32 -107.50 -2.51 -2.51 16 13 C -0.20 0.03 10.84 29.43 0.32 0.35 16 14 C -0.07 -0.03 5.36 -106.60 -0.57 -0.60 16 15 C 0.01 0.00 5.30 -104.90 -0.56 -0.56 16 16 C -0.09 0.04 9.15 -39.24 -0.36 -0.32 16 17 C -0.09 0.06 5.38 -104.68 -0.56 -0.50 16 18 C -0.08 0.13 2.82 36.01 0.10 0.23 16 19 O -0.53 0.53 12.77 -35.23 -0.45 0.08 16 20 Si 0.94 -1.26 25.06 -169.99 -4.26 -5.52 16 21 H -0.25 0.25 7.11 56.52 0.40 0.65 16 22 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 23 H -0.25 0.15 7.11 56.52 0.40 0.55 16 24 C -0.16 0.00 8.65 -39.45 -0.34 -0.34 16 25 C 0.11 0.10 7.29 -39.47 -0.29 -0.19 16 26 F -0.13 -0.28 17.26 2.25 0.04 -0.24 16 27 C -0.14 -0.03 8.55 -39.18 -0.33 -0.36 16 28 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 29 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 33 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 34 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 35 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 41 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 42 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 43 H 0.07 -0.09 5.20 -51.93 -0.27 -0.36 16 44 H 0.07 -0.07 7.21 -51.93 -0.37 -0.44 16 45 H 0.18 0.00 7.48 -52.48 -0.39 -0.40 16 46 H 0.17 -0.31 8.06 -52.49 -0.42 -0.74 16 47 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 48 H 0.12 -0.33 7.96 -51.93 -0.41 -0.75 16 49 H 0.38 -1.52 8.70 45.56 0.40 -1.13 16 50 H 0.13 -0.11 4.86 -52.49 -0.26 -0.37 16 51 H 0.14 -0.11 6.55 -52.49 -0.34 -0.45 16 LS Contribution 422.41 15.07 6.37 6.37 Total: 0.00 -4.25 422.41 -10.12 -14.37 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -7.40 Total: -10.38 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.20 Total: 1.09 kcal Atomic # 8 Polarization: 0.60 SS G_CDS: -0.71 Total: -0.11 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.04 Total: -0.24 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: -5.70 Total: -8.58 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.51 Total: -2.51 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -4.25 -10.12 -14.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_15607708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.446 kcal (2) G-P(sol) polarization free energy of solvation -4.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds