Wall clock time and date at job start Mon Mar 8 2021 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86305 * 109.47153 * 2 1 4 4 C 1.86295 * 109.47276 * 239.99482 * 2 1 3 5 5 C 1.86804 * 109.46923 * 119.99776 * 2 1 3 6 6 C 1.38305 * 119.93728 * 269.98003 * 5 2 1 7 7 C 1.38341 * 120.24091 * 179.97438 * 6 5 2 8 8 C 1.38001 * 120.12624 * 359.79095 * 7 6 5 9 9 C 1.39362 * 119.87055 * 0.45824 * 8 7 6 10 10 C 1.48388 * 120.11709 * 179.79284 * 9 8 7 11 11 C 1.39325 * 120.10961 * 359.72349 * 10 9 8 12 12 C 1.38052 * 119.92878 * 179.69690 * 11 10 9 13 13 C 1.50703 * 119.92808 * 180.25587 * 12 11 10 14 14 O 1.42906 * 109.46878 * 65.00354 * 13 12 11 15 15 Si 1.86297 * 109.47420 * 185.00468 * 13 12 11 16 16 H 1.48501 * 109.46806 * 300.00118 * 15 13 12 17 17 H 1.48500 * 109.46905 * 59.99969 * 15 13 12 18 18 H 1.48496 * 109.47000 * 180.02562 * 15 13 12 19 19 C 1.38261 * 120.14959 * 0.28777 * 12 11 10 20 20 C 1.38565 * 120.21765 * 0.02562 * 19 12 11 21 21 F 1.35096 * 119.96631 * 179.97438 * 20 19 12 22 22 C 1.38229 * 120.07120 * 359.97438 * 20 19 12 23 23 C 1.38043 * 119.94212 * 90.00047 * 5 2 1 24 24 H 1.08999 * 109.47566 * 300.00288 * 1 2 3 25 25 H 1.09000 * 109.46717 * 60.00541 * 1 2 3 26 26 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46965 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46607 * 299.99850 * 3 2 1 29 29 H 1.08998 * 109.46757 * 59.99838 * 3 2 1 30 30 H 1.08997 * 109.47589 * 300.00313 * 4 2 1 31 31 H 1.09000 * 109.47266 * 60.00314 * 4 2 1 32 32 H 1.09006 * 109.47179 * 180.02562 * 4 2 1 33 33 H 1.07993 * 119.88036 * 0.02562 * 6 5 2 34 34 H 1.08006 * 119.93798 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.06742 * 180.25577 * 8 7 6 36 36 H 1.08002 * 120.03782 * 359.97438 * 11 10 9 37 37 H 1.09002 * 109.46960 * 305.00710 * 13 12 11 38 38 H 0.96696 * 114.00201 * 179.97438 * 14 13 12 39 39 H 1.07994 * 119.89545 * 180.02562 * 19 12 11 40 40 H 1.07998 * 120.08009 * 179.97438 * 22 20 19 41 41 H 1.08003 * 120.05768 * 359.95372 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7161 -0.1679 2.6880 7 6 3.1766 -0.8137 3.8214 8 6 3.4046 -2.1746 3.7987 9 6 3.1790 -2.8967 2.6283 10 6 3.4267 -4.3594 2.5965 11 6 3.8911 -5.0146 3.7350 12 6 4.1143 -6.3766 3.7031 13 6 4.6112 -7.0862 4.9363 14 8 3.6171 -7.0138 5.9604 15 14 4.9549 -8.8714 4.5295 16 1 3.7065 -9.5200 4.0543 17 1 5.9879 -8.9465 3.4653 18 1 5.4439 -9.5707 5.7449 19 6 3.8838 -7.0910 2.5420 20 6 3.4281 -6.4446 1.4043 21 9 3.2050 -7.1476 0.2724 22 6 3.2016 -5.0812 1.4261 23 6 2.7153 -2.2413 1.4898 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1207 2.2702 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 2.1207 -1.9060 -1.5210 31 1 2.1208 -0.3646 -2.4111 32 1 3.5741 -0.8787 -1.5208 33 1 2.5350 0.8965 2.7114 34 1 3.3546 -0.2524 4.7268 35 1 3.7602 -2.6785 4.6852 36 1 4.0720 -4.4583 4.6429 37 1 5.5275 -6.6100 5.2851 38 1 3.8694 -7.4512 6.7851 39 1 4.0594 -8.1564 2.5218 40 1 2.8468 -4.5771 0.5393 41 1 2.5346 -2.7969 0.5815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15765612_17541464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:17 Heat of formation + Delta-G solvation = -76.015442 kcal Electronic energy + Delta-G solvation = -21852.505374 eV Core-core repulsion = 18541.624648 eV Total energy + Delta-G solvation = -3310.880726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84548 -40.95338 -39.43163 -37.60049 -34.02949 -32.43976 -31.58699 -30.08923 -29.48595 -28.42667 -28.41868 -27.06703 -24.75199 -23.70884 -22.19299 -21.55096 -18.78162 -18.62120 -17.66778 -17.53186 -17.23337 -16.54784 -16.14598 -15.68977 -15.54159 -15.34601 -14.91332 -14.51842 -14.48216 -14.30085 -14.19199 -14.09265 -13.89695 -13.85720 -13.36411 -13.30654 -13.26482 -13.19273 -13.11458 -12.94575 -12.64089 -12.25781 -12.06966 -11.93172 -11.87885 -11.11720 -10.92545 -10.81975 -10.66151 -10.43623 -9.78026 -9.76519 -9.04949 -0.42219 0.10023 0.39538 0.80989 1.04296 1.36720 1.43623 1.68469 1.83019 1.83876 1.93604 2.42439 2.52668 2.99290 3.08917 3.32329 3.54685 3.67821 3.82234 3.99389 4.02920 4.13558 4.22597 4.26481 4.35013 4.56407 4.62270 4.68843 4.69453 4.72367 4.74285 4.75304 4.76340 4.79359 4.97477 5.05115 5.06362 5.19534 5.27782 5.42343 5.47022 5.53240 5.54381 5.58690 5.67192 5.80110 6.07931 6.47023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.370 4.370 6 C -0.081 4.081 7 C -0.129 4.129 8 C -0.094 4.094 9 C -0.064 4.064 10 C -0.010 4.010 11 C -0.094 4.094 12 C -0.042 4.042 13 C -0.082 4.082 14 O -0.542 6.542 15 Si 0.941 3.059 16 H -0.246 1.246 17 H -0.247 1.247 18 H -0.253 1.253 19 C -0.162 4.162 20 C 0.113 3.887 21 F -0.134 7.134 22 C -0.145 4.145 23 C -0.074 4.074 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.383 0.617 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 1.843 1.607 2.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.412 4.412 6 C -0.099 4.099 7 C -0.147 4.147 8 C -0.112 4.112 9 C -0.064 4.064 10 C -0.010 4.010 11 C -0.112 4.112 12 C -0.042 4.042 13 C -0.192 4.192 14 O -0.349 6.349 15 Si 0.764 3.236 16 H -0.169 1.169 17 H -0.171 1.171 18 H -0.177 1.177 19 C -0.180 4.180 20 C 0.094 3.906 21 F -0.113 7.113 22 C -0.164 4.164 23 C -0.091 4.091 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.251 1.235 0.952 1.999 hybrid contribution 0.231 -0.133 0.514 0.579 sum 1.482 1.103 1.466 2.358 Atomic orbital electron populations 1.26126 1.20421 1.04624 1.04520 0.78195 0.66917 0.66199 0.63657 1.26125 1.06472 1.18472 1.04599 1.26144 1.06511 1.08041 1.15124 1.27355 1.04286 0.99063 1.10465 1.21191 0.96248 0.99777 0.92667 1.21209 1.00208 0.94457 0.98810 1.21273 0.98476 0.94305 0.97105 1.18744 1.01847 0.90940 0.94879 1.18624 0.97294 0.92393 0.92717 1.21113 0.98585 0.93463 0.98023 1.18950 0.98801 0.93633 0.92812 1.24710 0.94120 1.11056 0.89336 1.86507 1.42333 1.80847 1.25173 0.85794 0.81371 0.75025 0.81458 1.16907 1.17062 1.17668 1.21016 1.03654 1.00625 0.92711 1.17341 1.00934 0.89712 0.82641 1.91537 1.92313 1.78695 1.48736 1.21234 1.03330 0.92193 0.99640 1.21163 0.96404 0.94572 0.96993 0.91136 0.91007 0.91150 0.91027 0.90916 0.91146 0.91214 0.90864 0.91000 0.85974 0.85870 0.85703 0.84553 0.90010 0.76956 0.84854 0.84050 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.61 8.65 101.05 0.87 1.48 16 2 Si 1.06 -2.57 12.31 -169.99 -2.09 -4.66 16 3 C -0.45 0.84 8.53 101.05 0.86 1.70 16 4 C -0.45 0.75 8.53 101.05 0.86 1.61 16 5 C -0.37 0.05 4.59 -39.63 -0.18 -0.13 16 6 C -0.08 0.00 9.29 -39.52 -0.37 -0.37 16 7 C -0.13 -0.06 10.03 -39.63 -0.40 -0.45 16 8 C -0.09 -0.09 9.43 -39.25 -0.37 -0.46 16 9 C -0.06 -0.11 5.88 -104.90 -0.62 -0.72 16 10 C -0.01 -0.02 5.88 -104.91 -0.62 -0.64 16 11 C -0.09 -0.14 9.06 -39.25 -0.36 -0.49 16 12 C -0.04 -0.06 5.38 -104.68 -0.56 -0.63 16 13 C -0.08 0.06 2.79 36.01 0.10 0.16 16 14 O -0.54 0.16 12.81 -35.23 -0.45 -0.29 16 15 Si 0.94 -0.59 25.13 -169.99 -4.27 -4.86 16 16 H -0.25 -0.24 7.04 56.52 0.40 0.16 16 17 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 18 H -0.25 0.19 7.11 56.52 0.40 0.59 16 19 C -0.16 -0.35 8.64 -39.45 -0.34 -0.69 16 20 C 0.11 0.31 7.29 -39.46 -0.29 0.02 16 21 F -0.13 -0.47 17.26 2.25 0.04 -0.43 16 22 C -0.15 -0.27 9.41 -39.18 -0.37 -0.64 16 23 C -0.07 -0.06 8.67 -39.25 -0.34 -0.40 16 24 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 30 H 0.07 -0.12 7.68 -51.93 -0.40 -0.52 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.12 -0.23 7.40 -52.49 -0.39 -0.62 16 34 H 0.12 -0.17 8.06 -52.48 -0.42 -0.59 16 35 H 0.13 -0.07 6.21 -52.49 -0.33 -0.40 16 36 H 0.14 0.00 6.21 -52.49 -0.33 -0.33 16 37 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 38 H 0.38 -1.82 8.74 45.56 0.40 -1.43 16 39 H 0.13 0.15 4.84 -52.49 -0.25 -0.11 16 40 H 0.14 0.01 6.21 -52.49 -0.33 -0.32 16 41 H 0.12 -0.11 5.57 -52.48 -0.29 -0.40 16 LS Contribution 343.10 15.07 5.17 5.17 Total: 0.00 -5.58 343.10 -8.56 -14.14 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: -4.84 Total: -8.42 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.11 Total: -0.65 kcal Atomic # 8 Polarization: 0.16 SS G_CDS: -0.45 Total: -0.29 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.04 Total: -0.43 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: -6.36 Total: -9.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -5.58 -8.56 -14.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_17541464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.878 kcal (2) G-P(sol) polarization free energy of solvation -5.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds