Wall clock time and date at job start Mon Mar 8 2021 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86305 * 109.47153 * 2 1 4 4 C 1.86295 * 109.47276 * 239.99482 * 2 1 3 5 5 C 1.86804 * 109.46923 * 119.99776 * 2 1 3 6 6 C 1.38305 * 119.93728 * 269.98003 * 5 2 1 7 7 C 1.38341 * 120.24091 * 179.97438 * 6 5 2 8 8 C 1.38001 * 120.12624 * 359.79095 * 7 6 5 9 9 C 1.39362 * 119.87055 * 0.45824 * 8 7 6 10 10 C 1.48388 * 120.11709 * 179.79284 * 9 8 7 11 11 C 1.39325 * 120.10961 * 359.72349 * 10 9 8 12 12 C 1.38052 * 119.92878 * 179.69690 * 11 10 9 13 13 C 1.50703 * 119.92808 * 180.25587 * 12 11 10 14 14 O 1.42906 * 109.46878 * 65.00354 * 13 12 11 15 15 Si 1.86297 * 109.47420 * 185.00468 * 13 12 11 16 16 H 1.48501 * 109.46806 * 300.00118 * 15 13 12 17 17 H 1.48500 * 109.46905 * 59.99969 * 15 13 12 18 18 H 1.48496 * 109.47000 * 180.02562 * 15 13 12 19 19 C 1.38261 * 120.14959 * 0.28777 * 12 11 10 20 20 C 1.38565 * 120.21765 * 0.02562 * 19 12 11 21 21 F 1.35096 * 119.96631 * 179.97438 * 20 19 12 22 22 C 1.38229 * 120.07120 * 359.97438 * 20 19 12 23 23 C 1.38043 * 119.94212 * 90.00047 * 5 2 1 24 24 H 1.08999 * 109.47566 * 300.00288 * 1 2 3 25 25 H 1.09000 * 109.46717 * 60.00541 * 1 2 3 26 26 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46965 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46607 * 299.99850 * 3 2 1 29 29 H 1.08998 * 109.46757 * 59.99838 * 3 2 1 30 30 H 1.08997 * 109.47589 * 300.00313 * 4 2 1 31 31 H 1.09000 * 109.47266 * 60.00314 * 4 2 1 32 32 H 1.09006 * 109.47179 * 180.02562 * 4 2 1 33 33 H 1.07993 * 119.88036 * 0.02562 * 6 5 2 34 34 H 1.08006 * 119.93798 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.06742 * 180.25577 * 8 7 6 36 36 H 1.08002 * 120.03782 * 359.97438 * 11 10 9 37 37 H 1.09002 * 109.46960 * 305.00710 * 13 12 11 38 38 H 0.96696 * 114.00201 * 179.97438 * 14 13 12 39 39 H 1.07994 * 119.89545 * 180.02562 * 19 12 11 40 40 H 1.07998 * 120.08009 * 179.97438 * 22 20 19 41 41 H 1.08003 * 120.05768 * 359.95372 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7161 -0.1679 2.6880 7 6 3.1766 -0.8137 3.8214 8 6 3.4046 -2.1746 3.7987 9 6 3.1790 -2.8967 2.6283 10 6 3.4267 -4.3594 2.5965 11 6 3.8911 -5.0146 3.7350 12 6 4.1143 -6.3766 3.7031 13 6 4.6112 -7.0862 4.9363 14 8 3.6171 -7.0138 5.9604 15 14 4.9549 -8.8714 4.5295 16 1 3.7065 -9.5200 4.0543 17 1 5.9879 -8.9465 3.4653 18 1 5.4439 -9.5707 5.7449 19 6 3.8838 -7.0910 2.5420 20 6 3.4281 -6.4446 1.4043 21 9 3.2050 -7.1476 0.2724 22 6 3.2016 -5.0812 1.4261 23 6 2.7153 -2.2413 1.4898 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1207 2.2702 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 2.1207 -1.9060 -1.5210 31 1 2.1208 -0.3646 -2.4111 32 1 3.5741 -0.8787 -1.5208 33 1 2.5350 0.8965 2.7114 34 1 3.3546 -0.2524 4.7268 35 1 3.7602 -2.6785 4.6852 36 1 4.0720 -4.4583 4.6429 37 1 5.5275 -6.6100 5.2851 38 1 3.8694 -7.4512 6.7851 39 1 4.0594 -8.1564 2.5218 40 1 2.8468 -4.5771 0.5393 41 1 2.5346 -2.7969 0.5815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_17541464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:21:16 Heat of formation + Delta-G solvation = -66.063197 kcal Electronic energy + Delta-G solvation = -21852.073812 eV Core-core repulsion = 18541.624648 eV Total energy + Delta-G solvation = -3310.449164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06270 -40.99932 -39.42675 -37.55105 -34.06208 -32.48754 -31.58512 -30.10529 -29.34910 -28.28279 -28.26261 -27.07190 -24.80446 -23.72291 -22.24436 -21.57809 -18.84119 -18.54534 -17.73879 -17.62158 -17.27325 -16.75483 -16.15056 -15.68498 -15.57239 -15.34460 -14.89697 -14.48816 -14.43893 -14.30689 -14.14478 -14.04209 -13.79731 -13.74479 -13.32952 -13.24753 -13.17133 -13.11903 -12.99079 -12.96302 -12.59290 -12.28428 -12.04577 -11.93279 -11.88473 -11.03029 -10.76721 -10.74763 -10.67512 -10.37608 -9.88202 -9.74771 -9.10319 -0.49719 -0.01137 0.41366 0.76289 1.09701 1.40917 1.45769 1.83375 1.86723 2.01958 2.07664 2.37623 2.66195 2.93930 3.06218 3.30157 3.48727 3.72865 3.77473 3.94481 4.05279 4.10254 4.25016 4.30643 4.41405 4.58191 4.61707 4.76747 4.83430 4.84238 4.86767 4.87834 4.88265 4.90652 4.91245 4.99848 5.05544 5.16381 5.23112 5.50738 5.55786 5.60040 5.64175 5.67037 5.69415 5.72065 6.11147 6.78771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.123 2.877 3 C -0.459 4.459 4 C -0.465 4.465 5 C -0.383 4.383 6 C -0.090 4.090 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.082 4.082 10 C -0.016 4.016 11 C -0.098 4.098 12 C -0.049 4.049 13 C -0.077 4.077 14 O -0.559 6.559 15 Si 0.967 3.033 16 H -0.274 1.274 17 H -0.260 1.260 18 H -0.245 1.245 19 C -0.174 4.174 20 C 0.095 3.905 21 F -0.144 7.144 22 C -0.151 4.151 23 C -0.088 4.088 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.402 0.598 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 2.845 2.305 4.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.311 2.689 3 C -0.566 4.566 4 C -0.572 4.572 5 C -0.422 4.422 6 C -0.108 4.108 7 C -0.157 4.157 8 C -0.123 4.123 9 C -0.082 4.082 10 C -0.016 4.016 11 C -0.116 4.116 12 C -0.050 4.050 13 C -0.188 4.188 14 O -0.369 6.369 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.184 1.184 18 H -0.169 1.169 19 C -0.192 4.192 20 C 0.076 3.924 21 F -0.122 7.122 22 C -0.170 4.170 23 C -0.105 4.105 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.126 0.874 38 H 0.253 0.747 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.524 2.220 1.682 3.175 hybrid contribution 0.126 -0.437 0.306 0.548 sum 1.650 1.783 1.989 3.139 Atomic orbital electron populations 1.26300 1.21718 1.04338 1.04640 0.77217 0.65165 0.64963 0.61603 1.26230 1.06467 1.18945 1.04989 1.26312 1.06471 1.08380 1.16018 1.27883 1.03788 0.98909 1.11601 1.21541 0.95798 1.00889 0.92590 1.21499 1.00065 0.94470 0.99710 1.21487 0.98692 0.94792 0.97357 1.18901 1.02777 0.90873 0.95642 1.18786 0.97166 0.92772 0.92847 1.21332 0.98219 0.93593 0.98425 1.19246 0.98397 0.93881 0.93428 1.24674 0.94811 1.10569 0.88702 1.86459 1.42882 1.81314 1.26212 0.85434 0.79382 0.75013 0.80950 1.19949 1.18436 1.16885 1.21187 1.04015 1.00996 0.93040 1.17546 1.01958 0.90200 0.82667 1.91504 1.92536 1.78941 1.49234 1.21392 1.03318 0.91944 1.00315 1.21419 0.96562 0.95261 0.97280 0.91249 0.90664 0.91660 0.91164 0.90658 0.90681 0.91217 0.90583 0.91243 0.84077 0.84309 0.84653 0.83180 0.87406 0.74739 0.84558 0.82896 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.37 8.65 113.37 0.98 2.35 16 2 Si 1.12 -5.97 12.31 68.60 0.84 -5.12 16 3 C -0.46 2.13 8.53 113.37 0.97 3.10 16 4 C -0.46 1.59 8.53 113.37 0.97 2.56 16 5 C -0.38 0.17 4.59 22.24 0.10 0.27 16 6 C -0.09 0.04 9.29 22.31 0.21 0.25 16 7 C -0.14 -0.07 10.03 22.24 0.22 0.15 16 8 C -0.11 -0.22 9.43 22.48 0.21 -0.01 16 9 C -0.08 -0.32 5.88 -20.04 -0.12 -0.43 16 10 C -0.02 -0.07 5.88 -20.05 -0.12 -0.19 16 11 C -0.10 -0.32 9.06 22.49 0.20 -0.11 16 12 C -0.05 -0.17 5.38 -19.90 -0.11 -0.28 16 13 C -0.08 0.14 2.79 71.24 0.20 0.34 16 14 O -0.56 0.73 12.81 -148.98 -1.91 -1.18 16 15 Si 0.97 -0.93 25.13 68.60 1.72 0.80 16 16 H -0.27 -0.98 7.04 99.48 0.70 -0.28 16 17 H -0.26 -0.25 7.11 99.48 0.71 0.46 16 18 H -0.25 0.56 7.11 99.48 0.71 1.26 16 19 C -0.17 -0.98 8.64 22.35 0.19 -0.79 16 20 C 0.10 0.67 7.29 22.35 0.16 0.83 16 21 F -0.14 -1.26 17.26 44.97 0.78 -0.48 16 22 C -0.15 -0.75 9.41 22.53 0.21 -0.53 16 23 C -0.09 -0.17 8.67 22.48 0.19 0.02 16 24 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 25 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H 0.07 -0.40 7.67 -2.39 -0.02 -0.42 16 30 H 0.07 -0.24 7.68 -2.39 -0.02 -0.25 16 31 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 33 H 0.14 -0.71 7.40 -2.91 -0.02 -0.73 16 34 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 35 H 0.14 -0.17 6.21 -2.91 -0.02 -0.19 16 36 H 0.15 -0.05 6.21 -2.91 -0.02 -0.07 16 37 H 0.11 -0.76 7.96 -2.39 -0.02 -0.77 16 38 H 0.40 -4.26 8.74 -74.06 -0.65 -4.91 16 39 H 0.14 0.54 4.84 -2.91 -0.01 0.53 16 40 H 0.15 0.20 6.21 -2.91 -0.02 0.18 16 41 H 0.13 -0.15 5.57 -2.91 -0.02 -0.17 16 Total: 0.00 -13.24 343.10 7.07 -6.18 By element: Atomic # 1 Polarization: -8.87 SS G_CDS: 1.15 Total: -7.72 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.48 Total: 7.53 kcal Atomic # 8 Polarization: 0.73 SS G_CDS: -1.91 Total: -1.18 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.78 Total: -0.48 kcal Atomic # 14 Polarization: -6.89 SS G_CDS: 2.57 Total: -4.33 kcal Total: -13.24 7.07 -6.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_17541464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.886 kcal (2) G-P(sol) polarization free energy of solvation -13.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds