Wall clock time and date at job start Mon Mar 8 2021 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86292 * 109.47418 * 2 1 4 4 C 1.86303 * 109.47244 * 239.99361 * 2 1 3 5 5 C 1.86798 * 109.46854 * 120.00000 * 2 1 3 6 6 C 1.37997 * 120.05988 * 264.50823 * 5 2 1 7 7 C 1.38351 * 120.12399 * 180.02562 * 6 5 2 8 8 C 1.38298 * 120.24121 * 0.02562 * 7 6 5 9 9 C 1.38042 * 120.12049 * 359.69735 * 8 7 6 10 10 C 1.39319 * 119.87596 * 0.55556 * 9 8 7 11 11 C 1.48395 * 120.11912 * 179.74563 * 10 9 8 12 12 C 1.39320 * 120.10803 * 298.65321 * 11 10 9 13 13 C 1.38057 * 119.92790 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.92687 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.46801 * 300.02338 * 14 13 12 16 16 Si 1.86295 * 109.47030 * 180.02562 * 14 13 12 17 17 H 1.48496 * 109.47539 * 60.00057 * 16 14 13 18 18 H 1.48507 * 109.47039 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47205 * 299.99679 * 16 14 13 20 20 C 1.38259 * 120.14661 * 0.02562 * 13 12 11 21 21 C 1.38563 * 120.21912 * 359.97438 * 20 13 12 22 22 F 1.35106 * 119.96662 * 180.02562 * 21 20 13 23 23 C 1.38226 * 120.07200 * 0.02562 * 21 20 13 24 24 H 1.09003 * 109.47286 * 304.83109 * 1 2 3 25 25 H 1.09007 * 109.46906 * 64.82318 * 1 2 3 26 26 H 1.08997 * 109.47427 * 184.82759 * 1 2 3 27 27 H 1.09000 * 109.47485 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46840 * 299.99876 * 3 2 1 29 29 H 1.09006 * 109.47484 * 59.99449 * 3 2 1 30 30 H 1.08997 * 109.47210 * 296.27069 * 4 2 1 31 31 H 1.09011 * 109.46482 * 56.26521 * 4 2 1 32 32 H 1.09000 * 109.47012 * 176.26176 * 4 2 1 33 33 H 1.07999 * 119.94548 * 0.04556 * 6 5 2 34 34 H 1.07994 * 119.88272 * 179.97438 * 7 6 5 35 35 H 1.07993 * 119.94232 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.06362 * 180.27973 * 9 8 7 37 37 H 1.07996 * 120.03598 * 0.02562 * 12 11 10 38 38 H 1.08992 * 109.47192 * 60.02012 * 14 13 12 39 39 H 0.96698 * 113.99921 * 299.99787 * 15 14 13 40 40 H 1.07994 * 119.88906 * 179.72142 * 20 13 12 41 41 H 1.07996 * 120.07608 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4840 -0.8784 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.8237 -0.1578 2.6511 7 6 3.2855 -0.8086 3.7813 8 6 3.4113 -2.1858 3.7894 9 6 3.0705 -2.9192 2.6707 10 6 2.6100 -2.2686 1.5281 11 6 2.2475 -3.0512 0.3206 12 6 3.2093 -3.8248 -0.3256 13 6 2.8681 -4.5510 -1.4491 14 6 3.9086 -5.3873 -2.1484 15 8 4.9769 -4.5472 -2.5900 16 14 3.1385 -6.2363 -3.6170 17 1 2.6096 -5.2161 -4.5574 18 1 4.1637 -7.0609 -4.3057 19 1 2.0284 -7.1094 -3.1581 20 6 1.5741 -4.5120 -1.9346 21 6 0.6128 -3.7446 -1.2967 22 9 -0.6502 -3.7106 -1.7753 23 6 0.9445 -3.0139 -0.1712 24 1 -0.3634 0.5870 0.8436 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3634 -1.0240 0.0865 27 1 3.5741 1.7564 -0.0005 28 1 2.1207 2.2702 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1763 -1.9235 -1.4882 31 1 2.0670 -0.4047 -2.4099 32 1 3.5720 -0.8207 -1.5552 33 1 2.7275 0.9179 2.6502 34 1 3.5494 -0.2391 4.6601 35 1 3.7727 -2.6888 4.6741 36 1 3.1649 -3.9951 2.6797 37 1 4.2206 -3.8563 0.0519 38 1 4.2969 -6.1361 -1.4581 39 1 4.7036 -3.8558 -3.2084 40 1 1.3129 -5.0781 -2.8163 41 1 0.1953 -2.4155 0.3258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15765612_17541550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:24:30 Heat of formation + Delta-G solvation = -49.753401 kcal Electronic energy + Delta-G solvation = -23174.222821 eV Core-core repulsion = 19864.480903 eV Total energy + Delta-G solvation = -3309.741918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01405 -41.16697 -39.50576 -37.60959 -34.08150 -32.26240 -31.64927 -30.07575 -29.41156 -28.51308 -28.24470 -26.89904 -24.70836 -23.33401 -22.80267 -21.72585 -19.04162 -17.94339 -17.59716 -17.44859 -17.01566 -16.86628 -16.16205 -16.06618 -15.81720 -15.62430 -15.06934 -14.54776 -14.42895 -14.40132 -14.18914 -14.04100 -13.90291 -13.63601 -13.40868 -13.24532 -13.09334 -13.07907 -12.73605 -12.68395 -12.42099 -12.27604 -12.12000 -11.88581 -11.78520 -11.00147 -10.85878 -10.80253 -10.51325 -10.16187 -9.82555 -9.74475 -9.40743 -0.23681 0.00390 0.38852 0.52248 1.12484 1.42195 1.48273 1.75432 1.88334 1.94311 2.02319 2.33868 2.62323 2.88253 3.03060 3.39792 3.44221 3.73280 3.79508 4.02326 4.06852 4.12149 4.22544 4.39936 4.51375 4.62802 4.67250 4.73008 4.78426 4.82692 4.83280 4.85493 4.86891 4.87452 4.91977 5.00456 5.09077 5.17834 5.25508 5.50004 5.53180 5.56133 5.62598 5.62826 5.67964 5.74418 6.10936 6.66197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.077 2.923 3 C -0.452 4.452 4 C -0.471 4.471 5 C -0.362 4.362 6 C -0.100 4.100 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.036 4.036 11 C -0.012 4.012 12 C -0.085 4.085 13 C -0.083 4.083 14 C -0.073 4.073 15 O -0.546 6.546 16 Si 0.968 3.032 17 H -0.253 1.253 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.167 4.167 21 C 0.099 3.901 22 F -0.143 7.143 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.390 0.610 40 H 0.140 0.860 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 1.196 0.786 1.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.267 2.733 3 C -0.560 4.560 4 C -0.578 4.578 5 C -0.403 4.403 6 C -0.117 4.117 7 C -0.154 4.154 8 C -0.137 4.137 9 C -0.142 4.142 10 C -0.036 4.036 11 C -0.012 4.012 12 C -0.103 4.103 13 C -0.084 4.084 14 C -0.184 4.184 15 O -0.353 6.353 16 Si 0.792 3.208 17 H -0.177 1.177 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.186 4.186 21 C 0.079 3.921 22 F -0.122 7.122 23 C -0.173 4.173 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.158 0.842 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.026 0.357 0.493 1.193 hybrid contribution -0.498 0.373 0.148 0.639 sum 0.528 0.730 0.641 1.106 Atomic orbital electron populations 1.26541 1.20848 1.04604 1.05032 0.77821 0.66377 0.66068 0.63033 1.26131 1.06536 1.18238 1.05071 1.26747 1.06649 1.09100 1.15296 1.27733 1.03560 0.97659 1.11311 1.21344 0.96927 1.00782 0.92678 1.21632 0.99509 0.95026 0.99185 1.21387 0.99130 0.94614 0.98568 1.21447 0.99399 1.00386 0.92950 1.18597 0.99558 0.93292 0.92187 1.18607 0.92329 0.96101 0.94181 1.21210 0.99898 0.95044 0.94197 1.20161 0.93604 0.98349 0.96251 1.24958 0.90874 0.96506 1.06067 1.86508 1.33268 1.48542 1.66954 0.85413 0.78520 0.79723 0.77116 1.17651 1.19376 1.18171 1.21228 0.93404 1.01750 1.02177 1.17510 0.79493 0.99791 0.95260 1.91518 1.37664 1.95281 1.87719 1.21609 0.97942 1.01440 0.96319 0.90695 0.90573 0.91238 0.90960 0.90623 0.90532 0.90426 0.90995 0.91002 0.84310 0.84726 0.84569 0.85259 0.83827 0.84636 0.76118 0.84220 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.68 8.64 113.37 0.98 1.65 16 2 Si 1.08 -3.06 10.42 68.60 0.71 -2.34 16 3 C -0.45 1.36 8.39 113.37 0.95 2.31 16 4 C -0.47 0.43 8.12 113.37 0.92 1.35 16 5 C -0.36 -0.19 4.61 22.48 0.10 -0.08 16 6 C -0.10 -0.01 9.28 22.24 0.21 0.19 16 7 C -0.14 -0.05 10.04 22.31 0.22 0.17 16 8 C -0.12 -0.09 10.03 22.24 0.22 0.13 16 9 C -0.12 -0.20 9.69 22.48 0.22 0.02 16 10 C -0.04 -0.07 5.32 -20.04 -0.11 -0.17 16 11 C -0.01 -0.01 3.12 -20.05 -0.06 -0.08 16 12 C -0.09 0.01 8.62 22.49 0.19 0.20 16 13 C -0.08 0.06 5.17 -19.90 -0.10 -0.05 16 14 C -0.07 0.21 2.82 71.24 0.20 0.41 16 15 O -0.55 0.91 12.76 -148.98 -1.90 -0.99 16 16 Si 0.97 -1.69 25.06 68.60 1.72 0.03 16 17 H -0.25 0.30 7.11 99.48 0.71 1.00 16 18 H -0.27 -0.38 7.11 99.48 0.71 0.33 16 19 H -0.26 0.07 7.11 99.48 0.71 0.78 16 20 C -0.17 -0.20 8.40 22.35 0.19 -0.01 16 21 C 0.10 0.32 6.61 22.34 0.15 0.46 16 22 F -0.14 -0.82 17.27 44.97 0.78 -0.05 16 23 C -0.15 -0.27 6.35 22.53 0.14 -0.13 16 24 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 25 H 0.08 -0.14 7.96 -2.38 -0.02 -0.16 16 26 H 0.07 -0.05 4.83 -2.39 -0.01 -0.06 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 29 H 0.08 -0.31 7.65 -2.38 -0.02 -0.33 16 30 H 0.08 0.01 2.55 -2.39 -0.01 0.01 16 31 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 32 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 33 H 0.14 -0.54 7.27 -2.91 -0.02 -0.56 16 34 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 35 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 36 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 37 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 38 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 39 H 0.39 -2.88 8.70 -74.06 -0.64 -3.53 16 40 H 0.14 -0.09 4.86 -2.91 -0.01 -0.10 16 41 H 0.16 0.05 4.85 -2.91 -0.01 0.03 16 Total: 0.00 -9.26 330.75 6.90 -2.36 By element: Atomic # 1 Polarization: -6.56 SS G_CDS: 1.16 Total: -5.39 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.43 Total: 6.38 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: -1.90 Total: -0.99 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.78 Total: -0.05 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: 2.43 Total: -2.32 kcal Total: -9.26 6.90 -2.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15765612_17541550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.392 kcal (2) G-P(sol) polarization free energy of solvation -9.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds