Wall clock time and date at job start Mon Mar 8 2021 07:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.52996 * 109.46904 * 239.99444 * 2 1 3 5 5 Si 1.86307 * 109.46943 * 119.99964 * 2 1 3 6 6 C 1.86301 * 109.46939 * 299.99849 * 5 2 1 7 7 C 1.86296 * 109.46758 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47228 * 59.99765 * 5 2 1 9 9 C 1.42897 * 114.00056 * 179.97438 * 8 5 2 10 10 C 1.50693 * 109.47353 * 180.02562 * 9 8 5 11 11 C 1.33669 * 122.07079 * 359.97438 * 10 9 8 12 12 S 1.76254 * 108.23309 * 179.76015 * 11 10 9 13 13 C 1.76179 * 89.84490 * 0.33383 * 12 11 10 14 14 C 1.47775 * 125.47256 * 179.97438 * 13 12 11 15 15 C 1.39312 * 120.02901 * 179.71523 * 14 13 12 16 16 C 1.37972 * 120.19042 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.03599 * 180.20428 * 16 15 14 18 18 O 1.42900 * 109.47058 * 119.98040 * 17 16 15 19 19 Si 1.86302 * 109.46872 * 359.97438 * 17 16 15 20 20 H 1.48494 * 109.47148 * 59.99848 * 19 17 16 21 21 H 1.48499 * 109.46793 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47206 * 299.99666 * 19 17 16 23 23 C 1.38485 * 119.92895 * 0.18502 * 16 15 14 24 24 C 1.37838 * 120.29078 * 0.02562 * 23 16 15 25 25 C 1.38685 * 120.86897 * 359.62443 * 24 23 16 26 26 O 1.36038 * 111.30429 * 181.01597 * 25 24 23 27 27 C 1.43790 * 109.19848 * 340.67913 * 26 25 24 28 28 C 1.51674 * 132.09418 * 179.10657 * 24 23 16 29 29 N 1.30261 * 109.04555 * 359.66442 * 13 12 11 30 30 H 1.08999 * 109.47255 * 300.00069 * 1 2 3 31 31 H 1.08999 * 109.46863 * 60.00387 * 1 2 3 32 32 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46552 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46922 * 300.00132 * 3 2 1 35 35 H 1.08999 * 109.47102 * 59.99837 * 3 2 1 36 36 H 1.08997 * 109.47866 * 299.99919 * 4 2 1 37 37 H 1.09004 * 109.46871 * 60.01029 * 4 2 1 38 38 H 1.09007 * 109.47069 * 179.97438 * 4 2 1 39 39 H 1.08999 * 109.47266 * 180.02562 * 6 5 2 40 40 H 1.08997 * 109.47092 * 300.00122 * 6 5 2 41 41 H 1.08998 * 109.47044 * 60.00351 * 6 5 2 42 42 H 1.08998 * 109.47388 * 299.99340 * 7 5 2 43 43 H 1.09004 * 109.47558 * 60.00155 * 7 5 2 44 44 H 1.09008 * 109.46567 * 179.97438 * 7 5 2 45 45 H 1.09008 * 109.46644 * 60.00091 * 9 8 5 46 46 H 1.09001 * 109.47240 * 300.00270 * 9 8 5 47 47 H 1.07995 * 125.88240 * 0.06288 * 11 10 9 48 48 H 1.08003 * 119.90237 * 359.97438 * 15 14 13 49 49 H 1.09003 * 109.47055 * 239.97934 * 17 16 15 50 50 H 0.96703 * 113.99791 * 299.99783 * 18 17 16 51 51 H 1.08001 * 119.85098 * 180.02562 * 23 16 15 52 52 H 1.08996 * 110.75365 * 269.53347 * 27 26 25 53 53 H 1.09001 * 110.91683 * 146.23492 * 27 26 25 54 54 H 1.09004 * 110.93780 * 313.76151 * 28 24 23 55 55 H 1.09003 * 110.94042 * 77.41103 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6073 -2.4160 1.5213 9 6 2.0294 -3.1817 2.6515 10 6 1.4730 -4.5783 2.5483 11 6 0.7078 -4.9634 1.5222 12 16 0.2689 -6.6530 1.7652 13 6 1.1790 -6.6675 3.2736 14 6 1.3236 -7.8281 4.1768 15 6 2.0777 -7.7146 5.3426 16 6 2.2145 -8.7959 6.1886 17 6 3.0273 -8.6679 7.4511 18 8 2.1960 -8.9362 8.5821 19 14 3.7094 -6.9389 7.5778 20 1 2.5884 -5.9656 7.6099 21 1 4.5109 -6.8129 8.8216 22 1 4.5734 -6.6603 6.4025 23 6 1.6037 -9.9990 5.8764 24 6 0.8592 -10.1220 4.7229 25 6 0.7009 -9.0477 3.8603 26 8 -0.0849 -9.3771 2.7998 27 6 -0.1259 -10.8084 2.6681 28 6 0.1047 -11.2913 4.1197 29 7 1.7094 -5.4927 3.4613 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7210 -1.2494 39 1 1.8936 -0.5135 3.9323 40 1 1.8933 1.0277 3.0423 41 1 0.4400 0.0000 3.0423 42 1 4.3777 -1.3912 0.6317 43 1 4.3770 0.1503 1.5218 44 1 4.3773 -1.3910 2.4119 45 1 1.6652 -2.7117 3.5652 46 1 3.1183 -3.2255 2.6746 47 1 0.4136 -4.3470 0.6857 48 1 2.5567 -6.7774 5.5849 49 1 3.8502 -9.3823 7.4275 50 1 1.4414 -8.3372 8.6665 51 1 1.7113 -10.8445 6.5397 52 1 0.6716 -11.1590 2.0130 53 1 -1.0980 -11.1378 2.3011 54 1 0.7111 -12.1969 4.1372 55 1 -0.8436 -11.4497 4.6333 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_16463832_12621894.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:58:06 Heat of formation + Delta-G solvation = -80.399330 kcal Electronic energy + Delta-G solvation = -34126.602552 eV Core-core repulsion = 29765.433417 eV Total energy + Delta-G solvation = -4361.169134 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 407.155 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.30818 -40.87804 -39.39722 -37.91633 -37.12762 -36.84414 -34.34717 -32.62881 -31.14380 -30.10510 -29.46916 -29.08007 -28.03154 -27.84454 -27.39038 -26.75276 -26.00123 -24.18439 -22.44493 -22.24914 -20.48359 -20.15983 -19.29768 -18.52109 -18.26212 -17.92957 -17.26463 -17.07386 -16.73991 -16.67252 -16.25415 -15.98120 -15.88033 -15.53144 -15.36460 -15.17367 -14.87947 -14.84927 -14.72444 -14.23484 -14.14779 -14.01711 -13.98185 -13.74291 -13.63166 -13.47227 -13.44851 -13.37535 -13.20664 -12.96178 -12.92528 -12.78576 -12.41255 -12.36258 -12.34316 -12.26428 -12.13172 -12.08626 -11.84443 -11.74125 -11.68688 -11.62394 -11.45141 -10.87236 -10.84085 -10.45713 -10.42669 -10.20578 -10.08545 -9.48916 -9.02146 -0.83527 0.05472 0.24885 0.37899 0.67107 1.16546 1.33938 1.43367 1.50678 1.67652 1.75307 1.90441 2.08187 2.13558 2.36683 2.50550 2.84422 3.36630 3.47904 3.60689 3.66133 3.82409 3.97364 4.09111 4.10725 4.11739 4.15403 4.16903 4.19834 4.33995 4.35132 4.45551 4.47830 4.54498 4.66214 4.71806 4.73895 4.75997 4.76824 4.78743 4.82458 4.82852 4.85848 4.90287 4.96507 4.98255 4.99871 5.08953 5.09440 5.14056 5.21064 5.27625 5.31404 5.37180 5.40639 5.44106 5.46117 5.57740 5.62547 5.94974 6.57574 6.70210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.377 4.377 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.320 2.680 6 C -0.519 4.519 7 C -0.519 4.519 8 O -0.634 6.634 9 C 0.159 3.841 10 C 0.040 3.960 11 C -0.229 4.229 12 S 0.131 5.869 13 C 0.098 3.902 14 C -0.062 4.062 15 C -0.060 4.060 16 C -0.145 4.145 17 C -0.057 4.057 18 O -0.546 6.546 19 Si 0.955 3.045 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.020 4.020 24 C -0.172 4.172 25 C 0.120 3.880 26 O -0.313 6.313 27 C 0.042 3.958 28 C -0.104 4.104 29 N -0.486 5.486 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.199 0.801 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.389 0.611 51 H 0.156 0.844 52 H 0.090 0.910 53 H 0.132 0.868 54 H 0.117 0.883 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -3.430 0.128 3.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.420 4.420 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.451 2.549 6 C -0.621 4.621 7 C -0.621 4.621 8 O -0.592 6.592 9 C 0.081 3.919 10 C -0.092 4.092 11 C -0.368 4.368 12 S 0.388 5.612 13 C -0.176 4.176 14 C -0.066 4.066 15 C -0.081 4.081 16 C -0.146 4.146 17 C -0.169 4.169 18 O -0.353 6.353 19 Si 0.781 3.219 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.039 4.039 24 C -0.173 4.173 25 C 0.071 3.929 26 O -0.227 6.227 27 C -0.032 4.032 28 C -0.141 4.141 29 N -0.202 5.202 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.216 0.784 48 H 0.152 0.848 49 H 0.155 0.845 50 H 0.238 0.762 51 H 0.174 0.826 52 H 0.108 0.892 53 H 0.150 0.850 54 H 0.135 0.865 55 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.308 -3.704 -0.241 3.725 hybrid contribution -0.065 1.521 -0.281 1.548 sum -0.373 -2.184 -0.522 2.276 Atomic orbital electron populations 1.21550 0.94170 1.01842 1.01896 1.25844 1.00414 1.02987 1.12763 1.21605 1.01327 0.94596 1.02305 1.21549 1.01028 1.00044 0.96831 0.76150 0.62454 0.51947 0.64334 1.27107 1.06931 1.10009 1.18044 1.27108 1.25253 1.05172 1.04553 1.85217 1.79826 1.46738 1.47409 1.20263 0.98450 0.85375 0.87794 1.20157 1.00515 0.97051 0.91451 1.27113 1.05679 0.98129 1.05837 1.85249 1.49117 1.07778 1.19020 1.25709 0.99758 0.94505 0.97615 1.17005 1.04271 0.88636 0.96703 1.20928 0.96020 0.99107 0.92031 1.20208 1.02715 0.93456 0.98244 1.24696 0.96377 1.12731 0.83104 1.86485 1.43285 1.60869 1.44688 0.85601 0.80361 0.76022 0.79914 1.18271 1.19000 1.18612 1.20519 0.91980 0.97507 0.93912 1.21064 1.03090 0.96424 0.96694 1.19644 0.90769 0.93792 0.88663 1.86824 1.62420 1.27092 1.46350 1.24253 1.05777 0.75532 0.97604 1.21922 1.01415 0.96738 0.93982 1.66188 1.23871 1.00221 1.29928 0.92153 0.93202 0.92458 0.91775 0.92984 0.91784 0.92450 0.93209 0.92145 0.91200 0.90093 0.91111 0.91101 0.90088 0.91199 0.89576 0.89571 0.78395 0.84838 0.84498 0.76164 0.82590 0.89174 0.85036 0.86494 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 2 C -0.38 0.24 0.53 -10.79 -0.01 0.23 16 3 C -0.14 0.20 7.85 71.98 0.56 0.76 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.32 -2.44 8.45 68.60 0.58 -1.86 16 6 C -0.52 0.59 8.50 113.37 0.96 1.55 16 7 C -0.52 0.60 8.50 113.37 0.96 1.56 16 8 O -0.63 -0.99 7.41 -148.98 -1.10 -2.09 16 9 C 0.16 0.48 5.72 71.23 0.41 0.89 16 10 C 0.04 0.32 6.69 41.59 0.28 0.60 16 11 C -0.23 -1.50 10.52 66.78 0.70 -0.79 16 12 S 0.13 0.93 21.58 -56.49 -1.22 -0.29 16 13 C 0.10 0.97 7.34 87.45 0.64 1.61 16 14 C -0.06 -0.47 5.89 -19.93 -0.12 -0.59 16 15 C -0.06 -0.31 8.28 22.47 0.19 -0.12 16 16 C -0.15 -0.12 5.39 -19.87 -0.11 -0.22 16 17 C -0.06 0.10 2.82 71.24 0.20 0.30 16 18 O -0.55 0.75 12.77 -148.98 -1.90 -1.15 16 19 Si 0.96 0.96 25.08 68.60 1.72 2.68 16 20 H -0.26 -0.71 7.11 99.48 0.71 0.00 16 21 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 22 H -0.26 -0.90 7.11 99.48 0.71 -0.19 16 23 C -0.02 0.02 9.60 22.23 0.21 0.23 16 24 C -0.17 -0.02 6.27 -19.54 -0.12 -0.14 16 25 C 0.12 0.57 6.74 22.94 0.15 0.73 16 26 O -0.31 -1.08 9.42 -93.98 -0.89 -1.97 16 27 C 0.04 -0.20 8.01 72.56 0.58 0.38 16 28 C -0.10 0.62 7.12 30.74 0.22 0.84 16 29 N -0.49 -5.20 10.10 -177.87 -1.80 -7.00 16 30 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 31 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 34 H 0.05 -0.02 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 36 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 37 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.06 -0.05 7.80 -2.38 -0.02 -0.07 16 39 H 0.07 -0.09 7.48 -2.39 -0.02 -0.11 16 40 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 41 H 0.07 -0.02 7.79 -2.39 -0.02 -0.04 16 42 H 0.07 -0.03 7.79 -2.39 -0.02 -0.05 16 43 H 0.08 -0.18 7.79 -2.38 -0.02 -0.20 16 44 H 0.07 -0.09 7.48 -2.38 -0.02 -0.11 16 45 H 0.09 0.05 7.22 -2.38 -0.02 0.03 16 46 H 0.09 0.05 7.21 -2.39 -0.02 0.03 16 47 H 0.20 0.65 7.51 -2.91 -0.02 0.63 16 48 H 0.13 0.78 4.61 -2.91 -0.01 0.77 16 49 H 0.14 -0.67 7.96 -2.39 -0.02 -0.69 16 50 H 0.39 -2.66 8.70 -74.05 -0.64 -3.30 16 51 H 0.16 -0.77 8.06 -2.91 -0.02 -0.80 16 52 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 53 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 54 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 55 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 Total: 0.00 -14.70 449.07 3.25 -11.45 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: 1.01 Total: -8.62 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.85 Total: 8.86 kcal Atomic # 7 Polarization: -5.20 SS G_CDS: -1.80 Total: -7.00 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -3.89 Total: -5.21 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.30 Total: 0.82 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -1.22 Total: -0.29 kcal Total: -14.70 3.25 -11.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_16463832_12621894.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.951 kcal (2) G-P(sol) polarization free energy of solvation -14.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds