Wall clock time and date at job start Mon Mar 8 2021 08:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.46867 * 2 1 4 4 C 1.50702 * 109.46965 * 120.00069 * 2 1 3 5 5 C 1.38005 * 120.04061 * 245.00170 * 4 2 1 6 6 C 1.39113 * 120.20667 * 180.02562 * 5 4 2 7 7 C 1.48326 * 120.01050 * 179.73034 * 6 5 4 8 8 C 1.39368 * 120.12125 * 129.71824 * 7 6 5 9 9 C 1.38022 * 119.86957 * 179.76824 * 8 7 6 10 10 C 1.38321 * 120.12203 * 0.49295 * 9 8 7 11 11 C 1.50708 * 119.87484 * 179.76425 * 10 9 8 12 12 H 1.08998 * 112.84964 * 191.21899 * 11 10 9 13 13 C 1.53781 * 113.60989 * 322.52017 * 11 10 9 14 14 C 1.53781 * 87.07817 * 139.97894 * 13 11 10 15 15 H 1.09005 * 113.61367 * 89.11327 * 14 13 11 16 16 O 1.42896 * 113.61951 * 220.01672 * 14 13 11 17 17 C 1.53779 * 113.61118 * 60.01753 * 11 10 9 18 18 C 1.38322 * 120.25445 * 359.78401 * 10 9 8 19 19 C 1.38010 * 120.12312 * 359.95825 * 18 10 9 20 20 C 1.40312 * 119.98477 * 359.45663 * 6 5 4 21 21 O 1.36067 * 129.91764 * 181.15257 * 20 6 5 22 22 C 1.43779 * 109.19757 * 199.11284 * 21 20 6 23 23 C 1.54708 * 102.75344 * 332.12688 * 22 21 20 24 24 C 1.38755 * 118.79857 * 0.90012 * 20 6 5 25 25 C 1.37785 * 120.85501 * 359.17888 * 24 20 6 26 26 H 0.96699 * 114.00169 * 300.00183 * 1 2 3 27 27 H 1.08998 * 109.46602 * 239.99917 * 2 1 3 28 28 H 1.48504 * 110.00158 * 299.99792 * 3 2 1 29 29 H 1.48497 * 110.00244 * 61.31900 * 3 2 1 30 30 H 1.08002 * 119.89461 * 359.78282 * 5 4 2 31 31 H 1.07995 * 120.06626 * 0.02562 * 8 7 6 32 32 H 1.07995 * 119.93742 * 180.22636 * 9 8 7 33 33 H 1.08997 * 113.61493 * 254.52969 * 13 11 10 34 34 H 1.08999 * 113.61591 * 25.43598 * 13 11 10 35 35 H 0.96701 * 114.00338 * 277.50403 * 16 14 13 36 36 H 1.08994 * 113.61797 * 334.57125 * 17 11 10 37 37 H 1.09002 * 113.60830 * 105.47630 * 17 11 10 38 38 H 1.08002 * 119.94253 * 179.97438 * 18 10 9 39 39 H 1.08001 * 120.06546 * 179.97438 * 19 18 10 40 40 H 1.09005 * 110.75755 * 90.43976 * 22 21 20 41 41 H 1.09001 * 110.75698 * 213.81354 * 22 21 20 42 42 H 1.09000 * 110.94196 * 267.04671 * 23 22 21 43 43 H 1.08998 * 110.93823 * 143.36557 * 23 22 21 44 44 H 1.08004 * 119.88375 * 180.40336 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6376 -0.0143 2.1902 6 6 3.1033 -0.6668 3.3272 7 6 3.8671 0.0844 4.3531 8 6 3.5054 -0.0013 5.6963 9 6 4.2227 0.6960 6.6471 10 6 5.2923 1.4868 6.2679 11 6 6.0684 2.2501 7.3102 12 1 6.7532 2.9797 6.8781 13 6 5.1909 2.8185 8.4379 14 6 6.3147 2.4172 9.4078 15 1 7.0665 3.1935 9.5502 16 8 5.8397 1.8704 10.6396 17 6 6.7179 1.3511 8.3755 18 6 5.6522 1.5801 4.9356 19 6 4.9454 0.8831 3.9768 20 6 2.8455 -2.0344 3.5060 21 8 3.1811 -2.8589 4.5350 22 6 3.1080 -4.2241 4.0901 23 6 2.0422 -4.1619 2.9704 24 6 2.1400 -2.7155 2.5243 25 6 1.6837 -2.0623 1.4002 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5878 2.4586 1.2242 30 1 2.8327 1.0395 2.0563 31 1 2.6681 -0.6155 5.9930 32 1 3.9457 0.6275 7.6887 33 1 5.0363 3.8953 8.3702 34 1 4.2640 2.2656 8.5908 35 1 5.5845 2.5360 11.2930 36 1 6.2086 0.3971 8.5113 37 1 7.7962 1.2434 8.2574 38 1 6.4880 2.1994 4.6450 39 1 5.2270 0.9569 2.9367 40 1 4.0680 -4.5525 3.6916 41 1 2.7806 -4.8771 4.8991 42 1 1.0500 -4.3816 3.3644 43 1 2.2944 -4.8391 2.1544 44 1 1.1305 -2.6065 0.6490 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_16463832_13419902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:57:44 Heat of formation + Delta-G solvation = -29.095521 kcal Electronic energy + Delta-G solvation = -26866.225517 eV Core-core repulsion = 23102.148185 eV Total energy + Delta-G solvation = -3764.077331 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28055 -41.07224 -39.59706 -39.06655 -37.28295 -36.09219 -34.19635 -32.67131 -31.92762 -30.88790 -29.87133 -26.73116 -26.68481 -26.05997 -24.38614 -23.69209 -23.16784 -22.04413 -21.61157 -20.19290 -18.79051 -18.50345 -18.40056 -17.94450 -17.21410 -17.02041 -16.55062 -16.28227 -16.02575 -15.90992 -15.68746 -15.33190 -15.16251 -14.66846 -14.52254 -14.29634 -14.06829 -14.00519 -13.86138 -13.67462 -13.42646 -13.42001 -13.30094 -12.77926 -12.57996 -12.45966 -12.26910 -12.23105 -12.05067 -11.80337 -11.65320 -11.59388 -11.30716 -10.72124 -10.64902 -10.19149 -9.87235 -9.43830 -8.96202 -4.96013 -0.17136 0.11843 0.47924 0.58840 1.28384 1.57911 1.92517 2.20451 2.44689 2.79312 3.28587 3.34495 3.42248 3.46792 3.55931 3.60037 3.66634 3.83248 3.94897 3.95919 4.02237 4.05357 4.08621 4.09454 4.16042 4.19311 4.31065 4.46643 4.50365 4.57321 4.59765 4.68407 4.77976 4.79031 4.80460 4.81215 4.91389 4.96374 4.98627 5.06165 5.08919 5.19179 5.24419 5.33459 5.35254 5.45037 5.52679 5.62601 5.72747 6.03131 6.09293 6.45457 6.89092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.071 4.071 3 Si 0.758 3.242 4 C -0.140 4.140 5 C -0.074 4.074 6 C -0.073 4.073 7 C -0.062 4.062 8 C -0.109 4.109 9 C -0.123 4.123 10 C -0.073 4.073 11 C -0.067 4.067 12 H 0.121 0.879 13 C -0.162 4.162 14 C 0.075 3.925 15 H 0.103 0.897 16 O -0.584 6.584 17 C -0.126 4.126 18 C -0.116 4.116 19 C -0.109 4.109 20 C 0.106 3.894 21 O -0.319 6.319 22 C 0.043 3.957 23 C -0.107 4.107 24 C -0.179 4.179 25 C -0.047 4.047 26 H 0.385 0.615 27 H 0.131 0.869 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 0.670 -0.660 3.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.181 4.181 3 Si 0.663 3.337 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.074 4.074 7 C -0.062 4.062 8 C -0.127 4.127 9 C -0.141 4.141 10 C -0.073 4.073 11 C -0.085 4.085 12 H 0.139 0.861 13 C -0.199 4.199 14 C 0.017 3.983 15 H 0.121 0.879 16 O -0.392 6.392 17 C -0.164 4.164 18 C -0.134 4.134 19 C -0.127 4.127 20 C 0.061 3.939 21 O -0.233 6.233 22 C -0.031 4.031 23 C -0.144 4.144 24 C -0.180 4.180 25 C -0.065 4.065 26 H 0.234 0.766 27 H 0.149 0.851 28 H -0.225 1.225 29 H -0.213 1.213 30 H 0.165 0.835 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.245 0.658 -1.268 3.545 hybrid contribution -1.562 -0.008 0.906 1.806 sum 1.683 0.650 -0.362 1.840 Atomic orbital electron populations 1.86571 1.18481 1.80294 1.50122 1.25086 0.83357 1.11316 0.98300 0.94162 0.90495 0.72542 0.76475 1.20086 1.02037 0.94356 0.97603 1.20949 0.96741 0.99840 0.91640 1.18060 1.03060 0.89933 0.96309 1.18771 0.96751 0.98291 0.92358 1.21182 0.99808 0.99167 0.92534 1.21011 0.96132 0.97589 0.99350 1.19889 0.95573 0.97146 0.94678 1.21358 0.97554 0.97592 0.92040 0.86131 1.23785 0.98435 1.02026 0.95666 1.23473 0.95868 0.96418 0.82586 0.87946 1.86495 1.86511 1.39155 1.27042 1.23178 1.01586 0.97929 0.93680 1.21286 1.00416 0.99857 0.91856 1.21491 0.94337 0.95895 1.00998 1.19784 0.94521 0.91691 0.87923 1.86852 1.85188 1.17960 1.33297 1.24149 0.99956 0.80527 0.98481 1.21889 1.00970 0.92294 0.99224 1.21070 1.02525 0.97594 0.96814 1.20367 0.96878 0.93491 0.95776 0.76558 0.85145 1.22509 1.21251 0.83550 0.87111 0.85988 0.89846 0.90174 0.75578 0.90917 0.89785 0.83312 0.83516 0.89503 0.85668 0.88375 0.87018 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.41 12.84 -148.98 -1.91 -3.33 16 2 C -0.07 0.04 2.81 71.24 0.20 0.24 16 3 Si 0.76 -1.03 29.88 68.60 2.05 1.02 16 4 C -0.14 -0.17 5.35 -19.86 -0.11 -0.28 16 5 C -0.07 -0.17 8.10 22.42 0.18 0.02 16 6 C -0.07 -0.43 5.50 -19.88 -0.11 -0.54 16 7 C -0.06 -0.39 5.45 -20.05 -0.11 -0.50 16 8 C -0.11 -0.84 9.21 22.49 0.21 -0.63 16 9 C -0.12 -0.71 8.59 22.24 0.19 -0.52 16 10 C -0.07 -0.21 5.29 -19.82 -0.10 -0.31 16 11 C -0.07 0.06 3.98 -11.01 -0.04 0.01 16 12 H 0.12 -0.56 8.09 -2.39 -0.02 -0.58 16 13 C -0.16 0.13 7.28 31.12 0.23 0.36 16 14 C 0.08 -0.05 5.21 31.12 0.16 0.11 16 15 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 16 O -0.58 -1.45 13.67 -148.98 -2.04 -3.49 16 17 C -0.13 -0.13 7.38 31.12 0.23 0.09 16 18 C -0.12 -0.14 9.69 22.24 0.22 0.08 16 19 C -0.11 -0.27 9.50 22.49 0.21 -0.06 16 20 C 0.11 0.71 6.59 22.90 0.15 0.86 16 21 O -0.32 -2.26 10.70 -94.32 -1.01 -3.26 16 22 C 0.04 -0.04 8.01 72.56 0.58 0.54 16 23 C -0.11 0.20 7.12 30.74 0.22 0.42 16 24 C -0.18 -0.59 6.27 -19.54 -0.12 -0.71 16 25 C -0.05 -0.10 9.67 22.22 0.21 0.12 16 26 H 0.39 -0.88 8.70 -74.06 -0.64 -1.52 16 27 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 28 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 29 H -0.29 -0.90 7.01 99.48 0.70 -0.20 16 30 H 0.15 -0.14 4.81 -2.91 -0.01 -0.15 16 31 H 0.11 0.96 8.04 -2.91 -0.02 0.94 16 32 H 0.12 0.62 6.64 -2.91 -0.02 0.60 16 33 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.08 0.16 6.30 -2.39 -0.02 0.15 16 35 H 0.39 -2.33 9.12 -74.06 -0.68 -3.00 16 36 H 0.07 0.38 7.72 -2.39 -0.02 0.36 16 37 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.15 -0.62 8.05 -2.91 -0.02 -0.64 16 39 H 0.15 -0.36 8.04 -2.91 -0.02 -0.38 16 40 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 41 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -17.63 360.71 -0.76 -18.39 By element: Atomic # 1 Polarization: -8.39 SS G_CDS: -0.25 Total: -8.64 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 2.40 Total: -0.69 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -4.96 Total: -10.08 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.05 Total: 1.02 kcal Total: -17.63 -0.76 -18.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_16463832_13419902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.704 kcal (2) G-P(sol) polarization free energy of solvation -17.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds