Wall clock time and date at job start Mon Mar 8 2021 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47732 * 120.00068 * 2 1 4 4 C 1.39283 * 120.03087 * 245.40827 * 3 2 1 5 5 C 1.37995 * 120.18984 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.03627 * 179.87985 * 5 4 3 7 7 O 1.42901 * 109.47373 * 64.97958 * 6 5 4 8 8 Si 1.86300 * 109.47541 * 184.98196 * 6 5 4 9 9 H 1.48498 * 109.47006 * 59.99780 * 8 6 5 10 10 H 1.48502 * 109.47466 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46781 * 300.00091 * 8 6 5 12 12 C 1.38464 * 119.92884 * 359.86211 * 5 4 3 13 13 C 1.37850 * 120.28603 * 359.97438 * 12 5 4 14 14 C 1.38677 * 120.87292 * 0.33317 * 13 12 5 15 15 O 1.36289 * 111.40342 * 179.13359 * 14 13 12 16 16 C 1.43777 * 109.09785 * 18.70857 * 15 14 13 17 17 C 1.51677 * 132.09542 * 180.37513 * 13 12 5 18 18 Si 1.86803 * 120.00199 * 179.97438 * 2 1 3 19 19 C 1.86299 * 109.47162 * 185.10879 * 18 2 1 20 20 C 1.86294 * 109.47064 * 305.11172 * 18 2 1 21 21 C 1.86307 * 109.46778 * 65.10878 * 18 2 1 22 22 H 1.08004 * 119.99769 * 185.03226 * 1 2 3 23 23 H 1.07995 * 119.99998 * 5.02661 * 1 2 3 24 24 H 1.08000 * 119.90167 * 359.97438 * 4 3 2 25 25 H 1.09003 * 109.47368 * 304.98528 * 6 5 4 26 26 H 0.96702 * 113.99479 * 59.99614 * 7 6 5 27 27 H 1.08003 * 119.85503 * 180.02562 * 12 5 4 28 28 H 1.08998 * 110.75650 * 214.15105 * 16 15 14 29 29 H 1.08997 * 110.75857 * 90.96516 * 16 15 14 30 30 H 1.08998 * 110.93895 * 46.42641 * 17 13 12 31 31 H 1.08999 * 110.97017 * 282.75096 * 17 13 12 32 32 H 1.09001 * 109.46823 * 54.93527 * 19 18 2 33 33 H 1.09005 * 109.47051 * 174.93392 * 19 18 2 34 34 H 1.09002 * 109.47212 * 294.93196 * 19 18 2 35 35 H 1.09003 * 109.47324 * 59.99861 * 20 18 2 36 36 H 1.09006 * 109.46733 * 179.97438 * 20 18 2 37 37 H 1.08994 * 109.47397 * 299.99585 * 20 18 2 38 38 H 1.08997 * 109.46976 * 60.00243 * 21 18 2 39 39 H 1.09006 * 109.46524 * 179.97438 * 21 18 2 40 40 H 1.08989 * 109.47284 * 300.00079 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 2.8479 1.6321 -1.0965 5 6 3.5389 2.8267 -1.1002 6 6 4.3873 3.2036 -2.2872 7 8 3.5508 3.3895 -3.4308 8 14 5.2994 4.7863 -1.9212 9 1 6.1687 4.5931 -0.7328 10 1 6.1350 5.1581 -3.0911 11 1 4.3210 5.8696 -1.6480 12 6 3.4515 3.6787 -0.0122 13 6 2.6762 3.3394 1.0760 14 6 1.9775 2.1419 1.1063 15 8 1.2928 1.9950 2.2755 16 6 1.1539 3.2807 2.9040 17 6 2.3860 4.0562 2.3808 18 14 2.2602 -1.6177 0.0007 19 6 4.0858 -1.2807 0.1570 20 6 1.6958 -2.6600 1.4380 21 6 1.9304 -2.5258 -1.5923 22 1 -0.5400 -0.9318 0.0820 23 1 -0.5400 0.9317 -0.0819 24 1 2.9145 0.9689 -1.9462 25 1 5.1054 2.4085 -2.4878 26 1 2.8861 4.0835 -3.3232 27 1 3.9924 4.6134 -0.0165 28 1 1.1894 3.1860 3.9893 29 1 0.2299 3.7662 2.5902 30 1 2.1407 5.1034 2.2037 31 1 3.2251 3.9659 3.0705 32 1 4.2683 -0.6719 1.0426 33 1 4.6231 -2.2247 0.2479 34 1 4.4340 -0.7482 -0.7281 35 1 0.6277 -2.8572 1.3465 36 1 2.2406 -3.6042 1.4381 37 1 1.8887 -2.1288 2.3700 38 1 2.2606 -1.9160 -2.4332 39 1 2.4758 -3.4696 -1.5920 40 1 0.8624 -2.7230 -1.6837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_16463832_14924794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:48 Heat of formation + Delta-G solvation = -66.322907 kcal Electronic energy + Delta-G solvation = -20097.363199 eV Core-core repulsion = 17194.126837 eV Total energy + Delta-G solvation = -2903.236362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.07085 -39.28121 -37.23234 -35.24645 -32.88464 -30.98321 -30.13382 -29.46812 -28.36418 -28.21902 -26.58006 -24.44771 -23.56274 -22.11440 -20.14998 -18.38381 -18.29665 -17.41222 -17.05039 -16.56322 -16.05229 -15.71270 -15.47743 -14.71352 -14.42108 -14.27115 -14.11776 -13.99885 -13.87065 -13.79892 -13.67253 -13.37103 -13.28283 -13.20550 -13.12871 -13.02683 -12.76426 -12.33588 -12.20254 -12.08587 -11.75808 -11.61582 -11.20101 -10.92067 -10.81708 -10.38832 -10.19124 -9.46384 -8.93190 0.19341 0.31256 1.13227 1.16210 1.41617 1.51110 1.79560 1.90587 1.93393 2.14774 2.33956 2.56840 2.77875 3.36171 3.49268 3.53736 3.76708 3.89973 4.00205 4.19679 4.28344 4.44424 4.46241 4.60109 4.72003 4.75009 4.75738 4.76025 4.80079 4.80610 4.82895 4.85220 4.88159 5.01165 5.17309 5.28019 5.44370 5.50264 5.55231 5.59122 5.62057 5.67199 5.84274 6.24021 6.56152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.369 4.369 3 C -0.047 4.047 4 C -0.055 4.055 5 C -0.145 4.145 6 C -0.073 4.073 7 O -0.538 6.538 8 Si 0.946 3.054 9 H -0.250 1.250 10 H -0.253 1.253 11 H -0.253 1.253 12 C -0.083 4.083 13 C -0.168 4.168 14 C 0.114 3.886 15 O -0.297 6.297 16 C 0.050 3.950 17 C -0.112 4.112 18 Si 1.047 2.953 19 C -0.444 4.444 20 C -0.447 4.447 21 C -0.447 4.447 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.119 0.881 26 H 0.376 0.624 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 1.015 1.193 1.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.410 4.410 3 C -0.048 4.048 4 C -0.073 4.073 5 C -0.145 4.145 6 C -0.184 4.184 7 O -0.343 6.343 8 Si 0.769 3.231 9 H -0.174 1.174 10 H -0.177 1.177 11 H -0.177 1.177 12 C -0.101 4.101 13 C -0.168 4.168 14 C 0.069 3.931 15 O -0.210 6.210 16 C -0.026 4.026 17 C -0.149 4.149 18 Si 1.238 2.762 19 C -0.552 4.552 20 C -0.554 4.554 21 C -0.554 4.554 22 H 0.122 0.878 23 H 0.109 0.891 24 H 0.155 0.845 25 H 0.136 0.864 26 H 0.223 0.777 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.303 1.176 1.255 1.746 hybrid contribution -0.658 0.455 0.352 0.874 sum -0.356 1.631 1.607 2.317 Atomic orbital electron populations 1.24158 0.95441 1.01567 0.94291 1.27818 1.00842 1.07558 1.04745 1.18170 1.00760 0.94757 0.91113 1.20802 0.94198 0.95759 0.96505 1.20022 1.01986 0.96055 0.96483 1.24870 0.96727 1.10966 0.85855 1.86518 1.50444 1.60850 1.36515 0.85743 0.80000 0.76605 0.80733 1.17384 1.17738 1.17676 1.20164 0.98369 0.99149 0.92383 1.20598 1.01764 0.97530 0.96948 1.19668 0.92585 0.93991 0.86848 1.86924 1.72447 1.30683 1.30988 1.23849 0.98068 0.81626 0.99013 1.21836 0.98779 1.00517 0.93791 0.78394 0.66518 0.63633 0.67617 1.26083 1.19524 1.04853 1.04774 1.26106 1.05851 1.09248 1.14237 1.26117 1.05009 1.08163 1.16129 0.87845 0.89128 0.84483 0.86350 0.77720 0.86160 0.87444 0.90468 0.88923 0.88889 0.91256 0.91192 0.91060 0.91278 0.91074 0.91060 0.91041 0.90993 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.09 13.59 28.83 0.39 0.30 16 2 C -0.37 -0.36 4.15 -37.60 -0.16 -0.52 16 3 C -0.05 -0.10 4.84 -104.76 -0.51 -0.61 16 4 C -0.05 -0.08 8.94 -39.28 -0.35 -0.43 16 5 C -0.14 -0.15 5.35 -104.63 -0.56 -0.71 16 6 C -0.07 0.01 2.80 36.00 0.10 0.11 16 7 O -0.54 -0.23 12.83 -35.23 -0.45 -0.68 16 8 Si 0.95 -0.26 25.14 -169.99 -4.27 -4.54 16 9 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 10 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 11 H -0.25 0.04 7.04 56.52 0.40 0.44 16 12 C -0.08 -0.11 8.65 -39.64 -0.34 -0.45 16 13 C -0.17 -0.31 6.27 -104.12 -0.65 -0.96 16 14 C 0.11 0.33 6.73 -38.55 -0.26 0.07 16 15 O -0.30 -0.87 11.08 -20.67 -0.23 -1.10 16 16 C 0.05 -0.02 8.00 38.05 0.30 0.28 16 17 C -0.11 0.06 7.12 -26.50 -0.19 -0.12 16 18 Si 1.05 -1.07 12.13 -169.99 -2.06 -3.13 16 19 C -0.44 0.06 8.55 101.05 0.86 0.92 16 20 C -0.45 0.11 8.65 101.05 0.87 0.99 16 21 C -0.45 0.37 8.65 101.05 0.87 1.25 16 22 H 0.10 -0.11 7.73 -52.48 -0.41 -0.52 16 23 H 0.09 0.12 8.05 -52.49 -0.42 -0.30 16 24 H 0.14 0.02 8.06 -52.49 -0.42 -0.40 16 25 H 0.12 -0.13 7.96 -51.93 -0.41 -0.55 16 26 H 0.38 -0.96 8.70 45.56 0.40 -0.57 16 27 H 0.12 -0.01 4.86 -52.48 -0.26 -0.27 16 28 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.09 -0.12 8.14 -51.93 -0.42 -0.55 16 32 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 33 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 34 H 0.07 -0.02 7.89 -51.93 -0.41 -0.43 16 35 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 37 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 LS Contribution 334.27 15.07 5.04 5.04 Total: 0.00 -5.03 334.27 -7.32 -12.34 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -5.73 Total: -8.07 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 0.39 Total: 0.14 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -0.68 Total: -1.78 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -6.34 Total: -7.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -5.03 -7.32 -12.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_16463832_14924794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.978 kcal (2) G-P(sol) polarization free energy of solvation -5.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds