Wall clock time and date at job start Mon Mar 8 2021 08:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 109.47187 * 2 1 4 4 C 1.86300 * 109.47087 * 240.00117 * 2 1 3 5 5 C 1.86795 * 109.47158 * 120.00087 * 2 1 3 6 6 C 1.38328 * 119.87509 * 90.00116 * 5 2 1 7 7 C 1.37998 * 120.12756 * 180.02562 * 6 5 2 8 8 C 1.39396 * 119.87411 * 359.97142 * 7 6 5 9 9 C 1.48286 * 120.12965 * 179.97438 * 8 7 6 10 10 C 1.39502 * 119.97570 * 180.02562 * 9 8 7 11 11 C 1.37659 * 120.02616 * 180.02562 * 10 9 8 12 12 C 1.39718 * 119.97410 * 359.97438 * 11 10 9 13 13 C 1.47675 * 120.02598 * 179.97438 * 12 11 10 14 14 C 1.36028 * 125.93848 * 180.02562 * 13 12 11 15 15 C 1.40895 * 106.73904 * 179.73103 * 14 13 12 16 16 C 1.34759 * 107.03761 * 0.40779 * 15 14 13 17 17 C 1.50699 * 125.65881 * 179.85002 * 16 15 14 18 18 O 1.42903 * 109.47152 * 64.72093 * 17 16 15 19 19 Si 1.86305 * 109.47184 * 184.71565 * 17 16 15 20 20 H 1.48496 * 109.46885 * 60.00303 * 19 17 16 21 21 H 1.48499 * 109.46850 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47126 * 300.00092 * 19 17 16 23 23 O 1.34304 * 108.68316 * 359.58758 * 16 15 14 24 24 C 1.39712 * 119.94985 * 0.25338 * 12 11 10 25 25 C 1.37666 * 119.97266 * 359.53742 * 24 12 11 26 26 C 1.39403 * 119.74506 * 0.25836 * 8 7 6 27 27 C 1.37997 * 119.86956 * 359.53704 * 26 8 7 28 28 H 1.08998 * 109.47192 * 300.00041 * 1 2 3 29 29 H 1.09004 * 109.46519 * 59.99971 * 1 2 3 30 30 H 1.08996 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47117 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46913 * 300.00023 * 3 2 1 33 33 H 1.08998 * 109.47089 * 59.99896 * 3 2 1 34 34 H 1.09006 * 109.47231 * 299.99785 * 4 2 1 35 35 H 1.08999 * 109.47733 * 60.00119 * 4 2 1 36 36 H 1.09008 * 109.46968 * 180.02562 * 4 2 1 37 37 H 1.08001 * 119.93268 * 359.97438 * 6 5 2 38 38 H 1.08001 * 120.06547 * 179.97438 * 7 6 5 39 39 H 1.07997 * 119.98447 * 359.97438 * 10 9 8 40 40 H 1.07996 * 120.01552 * 179.97438 * 11 10 9 41 41 H 1.08000 * 126.63111 * 359.97438 * 14 13 12 42 42 H 1.07994 * 126.48435 * 180.28267 * 15 14 13 43 43 H 1.08997 * 109.47198 * 304.71771 * 17 16 15 44 44 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.01977 * 179.72027 * 24 12 11 46 46 H 1.08006 * 119.98872 * 180.21081 * 25 24 12 47 47 H 1.08002 * 120.06309 * 179.71429 * 26 8 7 48 48 H 1.08000 * 119.93556 * 180.21122 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7154 -2.2442 1.4880 7 6 3.1749 -2.9000 2.6118 8 6 3.4081 -2.1857 3.7859 9 6 3.9013 -2.8849 4.9970 10 6 4.1332 -2.1670 6.1704 11 6 4.5916 -2.8149 7.2952 12 6 4.8241 -4.1922 7.2614 13 6 5.3163 -4.8883 8.4672 14 6 5.5824 -6.2185 8.5684 15 6 6.0320 -6.4434 9.8846 16 6 6.0097 -5.2541 10.5181 17 6 6.4070 -5.0150 11.9519 18 8 7.8002 -5.2894 12.1124 19 14 6.0681 -3.2392 12.4023 20 1 4.6203 -2.9540 12.2357 21 1 6.4602 -3.0035 13.8151 22 1 6.8542 -2.3448 11.5151 23 8 5.5803 -4.3164 9.6578 24 6 4.5961 -4.9094 6.0843 25 6 4.1336 -4.2600 4.9619 26 6 3.1703 -0.8125 3.8189 27 6 2.7149 -0.1666 2.6877 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5741 -0.8786 -1.5209 37 1 2.5340 -2.7966 0.5779 38 1 3.3535 -3.9648 2.5818 39 1 3.9538 -1.1023 6.1962 40 1 4.7714 -2.2589 8.2034 41 1 5.4742 -6.9584 7.7892 42 1 6.3349 -7.3901 10.3068 43 1 5.8300 -5.6715 12.6032 44 1 8.1261 -5.1567 13.0131 45 1 4.7797 -5.9732 6.0556 46 1 3.9540 -4.8148 4.0528 47 1 3.3449 -0.2549 4.7272 48 1 2.5335 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_11652086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:40:59 Heat of formation + Delta-G solvation = -13.168887 kcal Electronic energy + Delta-G solvation = -26516.512937 eV Core-core repulsion = 22818.913185 eV Total energy + Delta-G solvation = -3697.599752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.57510 -40.75906 -39.14282 -37.93624 -34.49653 -33.83007 -32.49634 -31.66578 -31.49038 -29.76096 -29.26237 -28.45090 -28.41467 -26.36934 -24.63823 -24.03789 -22.97619 -22.05290 -21.77430 -21.05526 -19.01194 -18.75255 -17.95895 -17.04527 -16.76549 -16.41370 -16.37892 -16.05751 -15.32169 -15.15632 -14.90352 -14.80986 -14.67080 -14.39866 -14.30696 -14.21220 -14.09615 -14.00158 -13.91921 -13.85691 -13.75948 -13.42949 -13.26263 -13.22627 -13.12718 -13.10650 -12.70418 -12.41783 -12.30648 -12.18760 -12.00625 -11.60511 -11.30892 -10.92901 -10.90821 -10.83010 -10.67826 -10.48783 -10.01112 -9.79450 -9.54573 -8.54058 -0.60935 0.40365 0.42140 0.56968 0.99132 1.09805 1.31827 1.49893 1.71436 1.71652 1.78742 1.84680 1.92363 1.99215 2.54504 2.75387 3.16882 3.28729 3.58277 3.67373 3.68955 3.85220 3.92258 4.05957 4.09980 4.15417 4.26275 4.30323 4.37496 4.47497 4.66862 4.69417 4.70681 4.73234 4.74526 4.75212 4.75533 4.76599 4.85105 4.90537 4.95741 4.98965 5.02268 5.17139 5.28912 5.32271 5.37616 5.42966 5.50878 5.53058 5.54050 5.57899 5.64074 5.78140 5.87967 6.12726 6.14401 6.42406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.368 4.368 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.040 4.040 9 C -0.037 4.037 10 C -0.107 4.107 11 C -0.098 4.098 12 C -0.017 4.017 13 C 0.037 3.963 14 C -0.190 4.190 15 C -0.166 4.166 16 C -0.010 4.010 17 C -0.042 4.042 18 O -0.542 6.542 19 Si 0.949 3.051 20 H -0.246 1.246 21 H -0.247 1.247 22 H -0.245 1.245 23 O -0.169 6.169 24 C -0.092 4.092 25 C -0.106 4.106 26 C -0.120 4.120 27 C -0.087 4.087 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.096 0.904 44 H 0.388 0.612 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 0.000 0.076 1.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.410 4.410 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.040 4.040 9 C -0.037 4.037 10 C -0.125 4.125 11 C -0.116 4.116 12 C -0.018 4.018 13 C -0.013 4.013 14 C -0.209 4.209 15 C -0.185 4.185 16 C -0.060 4.060 17 C -0.152 4.152 18 O -0.349 6.349 19 Si 0.769 3.231 20 H -0.169 1.169 21 H -0.170 1.170 22 H -0.167 1.167 23 O -0.066 6.066 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.104 4.104 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.114 0.886 44 H 0.236 0.764 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.140 0.860 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.408 1.005 -0.210 1.742 hybrid contribution 0.298 -0.724 0.654 1.020 sum -1.110 0.281 0.444 1.228 Atomic orbital electron populations 1.26127 1.20494 1.04573 1.04472 0.78179 0.66851 0.66120 0.63762 1.26137 1.06467 1.18590 1.04549 1.26138 1.06467 1.08044 1.15077 1.27447 1.03782 0.99512 1.10230 1.21018 0.97139 0.94622 0.97662 1.21326 0.99976 0.99779 0.92705 1.18794 0.99197 0.93416 0.92597 1.18959 0.98583 0.93265 0.92925 1.21162 0.99162 1.00246 0.91889 1.21195 0.98341 0.93252 0.98860 1.17797 1.01229 0.93059 0.89679 1.20408 1.04957 0.91594 0.84351 1.21852 1.05631 0.95057 0.98341 1.21501 1.04203 0.98795 0.94018 1.21346 1.05137 0.87268 0.92252 1.23781 0.86432 1.13913 0.91051 1.86483 1.21135 1.92070 1.35247 0.85632 0.82105 0.74602 0.80781 1.16907 1.17040 1.16743 1.83899 1.65898 1.37448 1.19399 1.20968 0.98755 1.00093 0.91151 1.21127 0.99236 0.93592 0.98425 1.21333 0.99964 0.93664 0.98850 1.21020 0.97153 0.99683 0.92585 0.91180 0.91055 0.91173 0.91056 0.90967 0.91185 0.91177 0.90963 0.91053 0.85941 0.85930 0.85093 0.85201 0.82779 0.82770 0.88603 0.76353 0.84976 0.84888 0.85971 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.63 8.65 101.05 0.87 1.50 16 2 Si 1.06 -2.57 12.30 -169.99 -2.09 -4.67 16 3 C -0.45 0.77 8.52 101.05 0.86 1.63 16 4 C -0.45 0.79 8.52 101.05 0.86 1.65 16 5 C -0.37 0.02 4.60 -39.51 -0.18 -0.16 16 6 C -0.09 -0.03 9.28 -39.64 -0.37 -0.40 16 7 C -0.12 -0.14 9.43 -39.24 -0.37 -0.51 16 8 C -0.04 -0.08 5.88 -104.90 -0.62 -0.69 16 9 C -0.04 -0.07 5.88 -104.82 -0.62 -0.69 16 10 C -0.11 -0.18 9.41 -39.32 -0.37 -0.55 16 11 C -0.10 -0.23 9.70 -39.24 -0.38 -0.61 16 12 C -0.02 -0.05 5.88 -104.94 -0.62 -0.66 16 13 C 0.04 0.13 7.03 -36.52 -0.26 -0.13 16 14 C -0.19 -0.46 10.26 -39.37 -0.40 -0.86 16 15 C -0.17 -0.42 10.78 -39.81 -0.43 -0.85 16 16 C -0.01 -0.03 6.24 -35.54 -0.22 -0.25 16 17 C -0.04 0.00 2.97 36.01 0.11 0.10 16 18 O -0.54 -0.13 12.86 -35.23 -0.45 -0.58 16 19 Si 0.95 0.11 27.39 -169.99 -4.66 -4.55 16 20 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 21 H -0.25 0.19 7.11 56.52 0.40 0.59 16 22 H -0.24 -0.56 7.11 56.52 0.40 -0.16 16 23 O -0.17 -0.70 8.80 4.62 0.04 -0.66 16 24 C -0.09 -0.11 9.54 -39.24 -0.37 -0.49 16 25 C -0.11 -0.11 9.41 -39.32 -0.37 -0.48 16 26 C -0.12 -0.16 9.43 -39.24 -0.37 -0.53 16 27 C -0.09 -0.04 9.28 -39.63 -0.37 -0.41 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 34 H 0.07 -0.14 7.67 -51.93 -0.40 -0.53 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 37 H 0.12 -0.20 7.40 -52.49 -0.39 -0.59 16 38 H 0.12 -0.08 6.19 -52.49 -0.33 -0.40 16 39 H 0.13 -0.02 6.19 -52.49 -0.32 -0.35 16 40 H 0.13 0.19 7.90 -52.49 -0.41 -0.22 16 41 H 0.15 0.00 7.25 -52.49 -0.38 -0.38 16 42 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.10 -0.24 7.96 -51.93 -0.41 -0.66 16 44 H 0.39 -1.83 8.74 45.56 0.40 -1.44 16 45 H 0.13 -0.11 6.97 -52.49 -0.37 -0.47 16 46 H 0.13 -0.13 6.19 -52.48 -0.32 -0.45 16 47 H 0.12 -0.03 6.19 -52.49 -0.33 -0.36 16 48 H 0.12 -0.18 7.40 -52.49 -0.39 -0.57 16 LS Contribution 400.88 15.07 6.04 6.04 Total: 0.00 -7.28 400.88 -10.89 -18.17 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: -6.16 Total: -10.37 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.61 Total: -3.38 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: -0.41 Total: -1.25 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: -6.75 Total: -9.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -7.28 -10.89 -18.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11652086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.004 kcal (2) G-P(sol) polarization free energy of solvation -7.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds