Wall clock time and date at job start Mon Mar 8 2021 08:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 109.47187 * 2 1 4 4 C 1.86300 * 109.47087 * 240.00117 * 2 1 3 5 5 C 1.86795 * 109.47158 * 120.00087 * 2 1 3 6 6 C 1.38328 * 119.87509 * 90.00116 * 5 2 1 7 7 C 1.37998 * 120.12756 * 180.02562 * 6 5 2 8 8 C 1.39396 * 119.87411 * 359.97142 * 7 6 5 9 9 C 1.48286 * 120.12965 * 179.97438 * 8 7 6 10 10 C 1.39502 * 119.97570 * 180.02562 * 9 8 7 11 11 C 1.37659 * 120.02616 * 180.02562 * 10 9 8 12 12 C 1.39718 * 119.97410 * 359.97438 * 11 10 9 13 13 C 1.47675 * 120.02598 * 179.97438 * 12 11 10 14 14 C 1.36028 * 125.93848 * 180.02562 * 13 12 11 15 15 C 1.40895 * 106.73904 * 179.73103 * 14 13 12 16 16 C 1.34759 * 107.03761 * 0.40779 * 15 14 13 17 17 C 1.50699 * 125.65881 * 179.85002 * 16 15 14 18 18 O 1.42903 * 109.47152 * 64.72093 * 17 16 15 19 19 Si 1.86305 * 109.47184 * 184.71565 * 17 16 15 20 20 H 1.48496 * 109.46885 * 60.00303 * 19 17 16 21 21 H 1.48499 * 109.46850 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47126 * 300.00092 * 19 17 16 23 23 O 1.34304 * 108.68316 * 359.58758 * 16 15 14 24 24 C 1.39712 * 119.94985 * 0.25338 * 12 11 10 25 25 C 1.37666 * 119.97266 * 359.53742 * 24 12 11 26 26 C 1.39403 * 119.74506 * 0.25836 * 8 7 6 27 27 C 1.37997 * 119.86956 * 359.53704 * 26 8 7 28 28 H 1.08998 * 109.47192 * 300.00041 * 1 2 3 29 29 H 1.09004 * 109.46519 * 59.99971 * 1 2 3 30 30 H 1.08996 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47117 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46913 * 300.00023 * 3 2 1 33 33 H 1.08998 * 109.47089 * 59.99896 * 3 2 1 34 34 H 1.09006 * 109.47231 * 299.99785 * 4 2 1 35 35 H 1.08999 * 109.47733 * 60.00119 * 4 2 1 36 36 H 1.09008 * 109.46968 * 180.02562 * 4 2 1 37 37 H 1.08001 * 119.93268 * 359.97438 * 6 5 2 38 38 H 1.08001 * 120.06547 * 179.97438 * 7 6 5 39 39 H 1.07997 * 119.98447 * 359.97438 * 10 9 8 40 40 H 1.07996 * 120.01552 * 179.97438 * 11 10 9 41 41 H 1.08000 * 126.63111 * 359.97438 * 14 13 12 42 42 H 1.07994 * 126.48435 * 180.28267 * 15 14 13 43 43 H 1.08997 * 109.47198 * 304.71771 * 17 16 15 44 44 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.01977 * 179.72027 * 24 12 11 46 46 H 1.08006 * 119.98872 * 180.21081 * 25 24 12 47 47 H 1.08002 * 120.06309 * 179.71429 * 26 8 7 48 48 H 1.08000 * 119.93556 * 180.21122 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7154 -2.2442 1.4880 7 6 3.1749 -2.9000 2.6118 8 6 3.4081 -2.1857 3.7859 9 6 3.9013 -2.8849 4.9970 10 6 4.1332 -2.1670 6.1704 11 6 4.5916 -2.8149 7.2952 12 6 4.8241 -4.1922 7.2614 13 6 5.3163 -4.8883 8.4672 14 6 5.5824 -6.2185 8.5684 15 6 6.0320 -6.4434 9.8846 16 6 6.0097 -5.2541 10.5181 17 6 6.4070 -5.0150 11.9519 18 8 7.8002 -5.2894 12.1124 19 14 6.0681 -3.2392 12.4023 20 1 4.6203 -2.9540 12.2357 21 1 6.4602 -3.0035 13.8151 22 1 6.8542 -2.3448 11.5151 23 8 5.5803 -4.3164 9.6578 24 6 4.5961 -4.9094 6.0843 25 6 4.1336 -4.2600 4.9619 26 6 3.1703 -0.8125 3.8189 27 6 2.7149 -0.1666 2.6877 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5741 -0.8786 -1.5209 37 1 2.5340 -2.7966 0.5779 38 1 3.3535 -3.9648 2.5818 39 1 3.9538 -1.1023 6.1962 40 1 4.7714 -2.2589 8.2034 41 1 5.4742 -6.9584 7.7892 42 1 6.3349 -7.3901 10.3068 43 1 5.8300 -5.6715 12.6032 44 1 8.1261 -5.1567 13.0131 45 1 4.7797 -5.9732 6.0556 46 1 3.9540 -4.8148 4.0528 47 1 3.3449 -0.2549 4.7272 48 1 2.5335 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11652086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:40:58 Heat of formation + Delta-G solvation = -2.654917 kcal Electronic energy + Delta-G solvation = -26516.057017 eV Core-core repulsion = 22818.913185 eV Total energy + Delta-G solvation = -3697.143832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.73463 -40.80949 -39.17621 -37.90798 -34.60776 -33.94281 -32.54767 -31.72545 -31.52370 -29.71187 -29.20460 -28.28956 -28.26464 -26.42667 -24.70160 -24.09502 -23.06243 -22.12191 -21.85511 -21.18271 -19.09406 -18.73106 -18.00492 -17.18433 -16.81632 -16.46236 -16.44199 -16.08445 -15.32956 -15.20934 -14.93722 -14.83385 -14.68420 -14.45596 -14.35510 -14.12031 -14.08109 -13.96992 -13.89034 -13.86944 -13.69533 -13.40861 -13.16123 -13.10725 -13.07707 -12.96394 -12.74977 -12.46086 -12.34014 -12.25199 -12.06347 -11.62032 -11.35993 -10.97549 -10.76883 -10.74899 -10.69228 -10.46354 -10.10792 -9.81486 -9.62098 -8.64511 -0.70698 0.30702 0.34128 0.54951 0.95961 1.02424 1.27827 1.43300 1.61547 1.69729 1.85848 1.88983 2.03630 2.12531 2.67668 2.68401 3.12019 3.25591 3.56834 3.62117 3.70003 3.79334 3.87140 3.97624 4.10594 4.14148 4.25503 4.27632 4.36837 4.49185 4.62125 4.69147 4.75484 4.79535 4.84711 4.85087 4.88090 4.89426 4.89617 4.90550 4.92360 4.92653 5.00287 5.17194 5.20428 5.26774 5.28086 5.45712 5.49854 5.59736 5.60393 5.68144 5.70448 5.73777 5.80271 5.98830 6.13894 6.72941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.380 4.380 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.058 4.058 9 C -0.046 4.046 10 C -0.114 4.114 11 C -0.113 4.113 12 C -0.034 4.034 13 C 0.014 3.986 14 C -0.191 4.191 15 C -0.176 4.176 16 C -0.029 4.029 17 C -0.037 4.037 18 O -0.559 6.559 19 Si 0.977 3.023 20 H -0.267 1.267 21 H -0.226 1.226 22 H -0.285 1.285 23 O -0.188 6.188 24 C -0.092 4.092 25 C -0.109 4.109 26 C -0.136 4.136 27 C -0.099 4.099 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.176 0.824 42 H 0.171 0.829 43 H 0.128 0.872 44 H 0.408 0.592 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.129 0.871 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -0.811 -0.321 1.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.419 4.419 6 C -0.116 4.116 7 C -0.150 4.150 8 C -0.058 4.058 9 C -0.046 4.046 10 C -0.132 4.132 11 C -0.131 4.131 12 C -0.034 4.034 13 C -0.035 4.035 14 C -0.209 4.209 15 C -0.195 4.195 16 C -0.079 4.079 17 C -0.147 4.147 18 O -0.370 6.370 19 Si 0.800 3.200 20 H -0.192 1.192 21 H -0.148 1.148 22 H -0.210 1.210 23 O -0.086 6.086 24 C -0.110 4.110 25 C -0.127 4.127 26 C -0.154 4.154 27 C -0.117 4.117 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.193 0.807 42 H 0.189 0.811 43 H 0.145 0.855 44 H 0.261 0.739 45 H 0.170 0.830 46 H 0.171 0.829 47 H 0.147 0.853 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.546 0.185 -0.557 1.653 hybrid contribution 0.342 -0.427 0.748 0.926 sum -1.204 -0.242 0.191 1.243 Atomic orbital electron populations 1.26295 1.21696 1.04456 1.04500 0.77157 0.65116 0.64576 0.61735 1.26292 1.06383 1.19525 1.04816 1.26268 1.06401 1.08527 1.15661 1.28046 1.02981 0.99723 1.11138 1.21357 0.96915 0.95093 0.98215 1.21596 0.99993 1.00646 0.92739 1.18943 1.00111 0.93860 0.92934 1.19151 0.98576 0.93853 0.93034 1.21316 0.99146 1.00926 0.91766 1.21284 0.99079 0.93571 0.99136 1.17998 1.01889 0.93334 0.90168 1.20727 1.05920 0.92332 0.84521 1.22186 1.04801 0.94990 0.98965 1.21809 1.04195 0.99361 0.94146 1.22022 1.05021 0.87441 0.93375 1.23843 0.86932 1.14090 0.89866 1.86431 1.21115 1.92074 1.37410 0.85274 0.79796 0.74071 0.80827 1.19170 1.14780 1.21004 1.83898 1.66359 1.38365 1.19969 1.21212 0.98151 1.01064 0.90547 1.21395 0.98702 0.93458 0.99123 1.21575 1.00315 0.93852 0.99661 1.21327 0.97092 1.00686 0.92590 0.91517 0.90686 0.91378 0.91353 0.90677 0.90997 0.90807 0.90678 0.91304 0.84048 0.84600 0.84013 0.85474 0.80657 0.81106 0.85477 0.73923 0.82952 0.82932 0.85294 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.53 8.65 113.37 0.98 2.51 16 2 Si 1.13 -6.22 12.30 68.60 0.84 -5.37 16 3 C -0.46 1.81 8.52 113.37 0.97 2.78 16 4 C -0.46 2.01 8.52 113.37 0.97 2.98 16 5 C -0.38 0.11 4.60 22.32 0.10 0.21 16 6 C -0.10 -0.05 9.28 22.23 0.21 0.16 16 7 C -0.13 -0.32 9.43 22.49 0.21 -0.11 16 8 C -0.06 -0.27 5.88 -20.04 -0.12 -0.39 16 9 C -0.05 -0.23 5.88 -19.99 -0.12 -0.35 16 10 C -0.11 -0.58 9.41 22.44 0.21 -0.37 16 11 C -0.11 -0.78 9.70 22.49 0.22 -0.56 16 12 C -0.03 -0.24 5.88 -20.07 -0.12 -0.36 16 13 C 0.01 0.12 7.03 24.25 0.17 0.29 16 14 C -0.19 -0.99 10.26 22.41 0.23 -0.76 16 15 C -0.18 -0.91 10.78 22.12 0.24 -0.67 16 16 C -0.03 -0.20 6.24 24.89 0.16 -0.04 16 17 C -0.04 0.00 2.97 71.24 0.21 0.21 16 18 O -0.56 0.03 12.86 -148.98 -1.92 -1.89 16 19 Si 0.98 1.03 27.39 68.60 1.88 2.91 16 20 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 21 H -0.23 0.58 7.11 99.48 0.71 1.29 16 22 H -0.28 -2.12 7.11 99.48 0.71 -1.41 16 23 O -0.19 -1.93 8.80 -6.39 -0.06 -1.99 16 24 C -0.09 -0.28 9.54 22.49 0.21 -0.06 16 25 C -0.11 -0.28 9.41 22.44 0.21 -0.07 16 26 C -0.14 -0.49 9.43 22.49 0.21 -0.27 16 27 C -0.10 -0.13 9.28 22.24 0.21 0.08 16 28 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.07 -0.30 7.67 -2.39 -0.02 -0.32 16 34 H 0.07 -0.36 7.67 -2.38 -0.02 -0.38 16 35 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 37 H 0.14 -0.59 7.40 -2.91 -0.02 -0.61 16 38 H 0.14 -0.21 6.19 -2.91 -0.02 -0.22 16 39 H 0.14 0.22 6.19 -2.91 -0.02 0.20 16 40 H 0.13 0.79 7.90 -2.91 -0.02 0.77 16 41 H 0.18 -0.09 7.25 -2.91 -0.02 -0.12 16 42 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 43 H 0.13 -0.83 7.96 -2.39 -0.02 -0.85 16 44 H 0.41 -4.30 8.74 -74.06 -0.65 -4.95 16 45 H 0.15 -0.31 6.97 -2.91 -0.02 -0.33 16 46 H 0.15 -0.35 6.19 -2.91 -0.02 -0.36 16 47 H 0.13 0.10 6.19 -2.91 -0.02 0.09 16 48 H 0.14 -0.41 7.40 -2.91 -0.02 -0.43 16 Total: 0.00 -18.18 400.88 7.19 -10.99 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: 1.08 Total: -9.84 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.36 Total: 5.19 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: -1.97 Total: -3.88 kcal Atomic # 14 Polarization: -5.19 SS G_CDS: 2.72 Total: -2.46 kcal Total: -18.18 7.19 -10.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11652086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.334 kcal (2) G-P(sol) polarization free energy of solvation -18.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds