Wall clock time and date at job start Mon Mar 8 2021 08:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86304 * 109.46911 * 2 1 4 4 C 1.86296 * 109.46889 * 240.00438 * 2 1 3 5 5 C 1.86793 * 109.47371 * 120.00279 * 2 1 3 6 6 C 1.38331 * 119.87653 * 89.99892 * 5 2 1 7 7 C 1.38016 * 120.12197 * 179.97438 * 6 5 2 8 8 C 1.39358 * 119.87365 * 0.02562 * 7 6 5 9 9 C 1.48335 * 120.11750 * 180.02562 * 8 7 6 10 10 C 1.39259 * 120.15391 * 310.24876 * 9 8 7 11 11 C 1.38043 * 119.93248 * 180.27631 * 10 9 8 12 12 C 1.50708 * 119.87897 * 179.72344 * 11 10 9 13 13 O 1.42899 * 109.46837 * 65.02456 * 12 11 10 14 14 Si 1.86297 * 109.46854 * 185.02518 * 12 11 10 15 15 H 1.48496 * 109.47482 * 60.00283 * 14 12 11 16 16 H 1.48505 * 109.47417 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47413 * 300.00046 * 14 12 11 18 18 C 1.38345 * 120.24041 * 359.75067 * 11 10 9 19 19 C 1.38223 * 120.30217 * 359.97438 * 18 11 10 20 20 C 1.38542 * 120.06349 * 0.02562 * 19 18 11 21 21 O 1.35839 * 120.11964 * 179.97438 * 20 19 18 22 22 C 1.42903 * 117.00127 * 0.02562 * 21 20 19 23 23 F 1.39904 * 109.46926 * 59.99380 * 22 21 20 24 24 F 1.39901 * 109.46899 * 299.99923 * 22 21 20 25 25 C 1.39363 * 119.75881 * 0.27287 * 8 7 6 26 26 C 1.38007 * 119.87142 * 359.45071 * 25 8 7 27 27 H 1.08996 * 109.47229 * 299.99273 * 1 2 3 28 28 H 1.08991 * 109.47360 * 59.99934 * 1 2 3 29 29 H 1.09008 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46858 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47165 * 300.00701 * 3 2 1 32 32 H 1.09010 * 109.46617 * 60.00239 * 3 2 1 33 33 H 1.08997 * 109.47177 * 299.99332 * 4 2 1 34 34 H 1.08997 * 109.47347 * 60.00099 * 4 2 1 35 35 H 1.09010 * 109.46822 * 179.97438 * 4 2 1 36 36 H 1.07996 * 119.93387 * 359.95826 * 6 5 2 37 37 H 1.07996 * 120.05897 * 180.02562 * 7 6 5 38 38 H 1.08005 * 120.03007 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.47205 * 305.02480 * 12 11 10 40 40 H 0.96707 * 113.99714 * 60.00636 * 13 12 11 41 41 H 1.08002 * 119.85049 * 179.97438 * 18 11 10 42 42 H 1.07999 * 119.96889 * 179.97438 * 19 18 11 43 43 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.06283 * 179.70164 * 25 8 7 45 45 H 1.08003 * 119.93919 * 180.27207 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7154 -2.2442 1.4879 7 6 3.1760 -2.8999 2.6116 8 6 3.4092 -2.1857 3.7853 9 6 3.9048 -2.8848 4.9961 10 6 3.2726 -4.0421 5.4436 11 6 3.7341 -4.6859 6.5742 12 6 3.0451 -5.9347 7.0610 13 8 3.2023 -6.9737 6.0926 14 14 3.8018 -6.4717 8.6765 15 1 3.6384 -5.3920 9.6828 16 1 3.1234 -7.7027 9.1560 17 1 5.2472 -6.7490 8.4782 18 6 4.8264 -4.1885 7.2622 19 6 5.4648 -3.0438 6.8235 20 6 5.0122 -2.3876 5.6903 21 8 5.6384 -1.2622 5.2585 22 6 6.7594 -0.8102 6.0209 23 9 7.7431 -1.8049 6.0383 24 9 6.3518 -0.5346 7.3306 25 6 3.1701 -0.8131 3.8189 26 6 2.7150 -0.1668 2.6876 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7565 0.0005 31 1 2.1205 2.2704 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1207 -1.9058 -1.5212 34 1 2.1206 -0.3642 -2.4111 35 1 3.5740 -0.8777 -1.5214 36 1 2.5337 -2.7967 0.5779 37 1 3.3554 -3.9644 2.5814 38 1 2.4195 -4.4332 4.9090 39 1 1.9842 -5.7312 7.2066 40 1 4.1233 -7.2076 5.9127 41 1 5.1819 -4.6970 8.1462 42 1 6.3168 -2.6600 7.3650 43 1 7.1657 0.0944 5.5685 44 1 3.3445 -0.2556 4.7273 45 1 2.5336 0.8976 2.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_11652986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:46:50 Heat of formation + Delta-G solvation = -173.799435 kcal Electronic energy + Delta-G solvation = -28824.421329 eV Core-core repulsion = 24565.626585 eV Total energy + Delta-G solvation = -4258.794745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.43348 -48.41703 -41.49478 -39.55814 -39.18484 -37.22582 -33.81583 -32.06756 -31.73314 -30.11329 -29.36958 -28.43324 -28.39269 -27.82563 -25.93577 -24.65257 -23.50096 -22.72815 -21.65600 -20.09254 -19.39340 -18.99436 -18.29003 -17.73710 -17.22986 -16.63924 -16.35328 -16.10221 -15.80985 -15.68733 -15.37542 -15.29233 -15.02457 -14.95374 -14.72578 -14.45617 -14.28130 -14.16435 -14.11990 -14.01621 -13.99031 -13.82174 -13.52677 -13.32239 -13.24643 -13.24559 -13.09097 -13.06671 -12.85408 -12.31722 -12.24048 -12.10702 -11.91978 -11.61723 -11.04323 -10.88712 -10.79242 -10.46472 -10.28103 -9.71460 -9.64913 -9.09046 -0.18497 0.16095 0.60274 0.63898 1.11496 1.39649 1.43097 1.48456 1.74976 1.87288 1.88237 1.97767 2.38225 2.47413 2.57319 3.01830 3.19537 3.40175 3.50886 3.54112 3.62172 3.77124 3.94779 4.09768 4.15096 4.20853 4.41526 4.53979 4.56600 4.68878 4.71617 4.73130 4.75634 4.77191 4.77330 4.77843 4.79806 4.97730 4.99281 5.11771 5.24415 5.31945 5.44139 5.45699 5.52410 5.54316 5.55742 5.69495 5.72870 5.93409 6.19516 6.51034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.367 4.367 6 C -0.089 4.089 7 C -0.115 4.115 8 C -0.035 4.035 9 C -0.061 4.061 10 C -0.044 4.044 11 C -0.142 4.142 12 C -0.076 4.076 13 O -0.538 6.538 14 Si 0.946 3.054 15 H -0.249 1.249 16 H -0.252 1.252 17 H -0.251 1.251 18 C -0.086 4.086 19 C -0.183 4.183 20 C 0.124 3.876 21 O -0.311 6.311 22 C 0.409 3.591 23 F -0.197 7.197 24 F -0.197 7.197 25 C -0.104 4.104 26 C -0.089 4.089 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.377 0.623 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.184 0.816 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 1.752 -1.142 2.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.106 4.106 7 C -0.133 4.133 8 C -0.035 4.035 9 C -0.062 4.062 10 C -0.062 4.062 11 C -0.143 4.143 12 C -0.187 4.187 13 O -0.343 6.343 14 Si 0.769 3.231 15 H -0.173 1.173 16 H -0.176 1.176 17 H -0.175 1.175 18 C -0.103 4.103 19 C -0.202 4.202 20 C 0.080 3.920 21 O -0.228 6.228 22 C 0.319 3.681 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.122 4.122 26 C -0.107 4.107 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.224 0.776 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.200 0.800 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.227 1.587 -0.420 1.657 hybrid contribution 0.795 0.039 0.160 0.812 sum 1.022 1.626 -0.261 1.938 Atomic orbital electron populations 1.26124 1.20505 1.04575 1.04438 0.78190 0.66864 0.66117 0.63834 1.26133 1.06432 1.18607 1.04512 1.26136 1.06446 1.08063 1.15069 1.27407 1.03848 0.99487 1.10149 1.20991 0.97419 0.94606 0.97630 1.21276 0.99824 0.99655 0.92516 1.18549 0.99494 0.93407 0.92080 1.18206 0.94984 0.96626 0.96362 1.20949 0.98603 0.91864 0.94769 1.20218 0.97617 0.98938 0.97489 1.24932 1.05657 0.86179 1.01940 1.86525 1.31788 1.54023 1.61920 0.85728 0.80019 0.81222 0.76113 1.17291 1.17585 1.17490 1.20900 0.94746 0.95554 0.99139 1.21412 1.03110 0.98374 0.97294 1.18833 0.92943 0.86486 0.93726 1.86700 1.42923 1.41033 1.52116 1.23460 0.77562 0.89737 0.77313 1.93112 1.63105 1.65541 1.96157 1.93112 1.90506 1.93824 1.40478 1.21217 0.98999 0.93328 0.98634 1.20990 0.97570 0.99565 0.92570 0.91184 0.91100 0.91162 0.91080 0.91007 0.91194 0.91163 0.91012 0.91077 0.86019 0.86128 0.84195 0.86282 0.77615 0.85504 0.84361 0.79983 0.86349 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.57 8.65 101.05 0.87 1.45 16 2 Si 1.06 -2.41 12.31 -169.99 -2.09 -4.50 16 3 C -0.45 0.75 8.53 101.05 0.86 1.62 16 4 C -0.45 0.71 8.52 101.05 0.86 1.58 16 5 C -0.37 -0.06 4.60 -39.51 -0.18 -0.24 16 6 C -0.09 -0.07 9.28 -39.63 -0.37 -0.43 16 7 C -0.11 -0.19 9.51 -39.25 -0.37 -0.57 16 8 C -0.04 -0.08 5.27 -104.91 -0.55 -0.64 16 9 C -0.06 -0.14 5.49 -104.76 -0.57 -0.72 16 10 C -0.04 -0.06 9.13 -39.27 -0.36 -0.42 16 11 C -0.14 -0.11 5.35 -104.65 -0.56 -0.67 16 12 C -0.08 0.03 2.80 36.01 0.10 0.13 16 13 O -0.54 -0.09 12.83 -35.23 -0.45 -0.54 16 14 Si 0.95 -0.45 25.13 -169.99 -4.27 -4.73 16 15 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 16 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 17 H -0.25 0.08 7.04 56.52 0.40 0.48 16 18 C -0.09 -0.10 8.66 -39.55 -0.34 -0.44 16 19 C -0.18 -0.36 8.25 -39.47 -0.33 -0.68 16 20 C 0.12 0.30 6.40 -38.87 -0.25 0.05 16 21 O -0.31 -0.42 8.80 -19.24 -0.17 -0.59 16 22 C 0.41 -0.43 5.98 101.05 0.60 0.18 16 23 F -0.20 -0.14 15.59 2.25 0.04 -0.11 16 24 F -0.20 -0.10 15.58 2.25 0.04 -0.06 16 25 C -0.10 -0.20 8.79 -39.25 -0.34 -0.55 16 26 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.13 7.67 -51.92 -0.40 -0.53 16 33 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.09 7.96 -51.92 -0.41 -0.50 16 36 H 0.12 -0.14 7.40 -52.49 -0.39 -0.53 16 37 H 0.12 0.07 8.04 -52.49 -0.42 -0.35 16 38 H 0.14 0.07 8.04 -52.48 -0.42 -0.35 16 39 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 40 H 0.38 -1.09 8.70 45.56 0.40 -0.69 16 41 H 0.13 -0.04 4.84 -52.49 -0.25 -0.29 16 42 H 0.14 0.19 5.09 -52.49 -0.27 -0.07 16 43 H 0.18 -1.01 8.14 -51.93 -0.42 -1.43 16 44 H 0.12 0.17 7.71 -52.49 -0.40 -0.24 16 45 H 0.12 -0.14 7.40 -52.48 -0.39 -0.53 16 LS Contribution 380.34 15.07 5.73 5.73 Total: 0.00 -6.31 380.34 -7.95 -14.27 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -5.48 Total: -8.67 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.30 Total: -0.80 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -0.62 Total: -1.13 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.07 Total: -0.17 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: -6.36 Total: -9.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -6.31 -7.95 -14.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11652986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.532 kcal (2) G-P(sol) polarization free energy of solvation -6.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds