Wall clock time and date at job start Mon Mar 8 2021 08:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86304 * 109.46911 * 2 1 4 4 C 1.86296 * 109.46889 * 240.00438 * 2 1 3 5 5 C 1.86793 * 109.47371 * 120.00279 * 2 1 3 6 6 C 1.38331 * 119.87653 * 89.99892 * 5 2 1 7 7 C 1.38016 * 120.12197 * 179.97438 * 6 5 2 8 8 C 1.39358 * 119.87365 * 0.02562 * 7 6 5 9 9 C 1.48335 * 120.11750 * 180.02562 * 8 7 6 10 10 C 1.39259 * 120.15391 * 310.24876 * 9 8 7 11 11 C 1.38043 * 119.93248 * 180.27631 * 10 9 8 12 12 C 1.50708 * 119.87897 * 179.72344 * 11 10 9 13 13 O 1.42899 * 109.46837 * 65.02456 * 12 11 10 14 14 Si 1.86297 * 109.46854 * 185.02518 * 12 11 10 15 15 H 1.48496 * 109.47482 * 60.00283 * 14 12 11 16 16 H 1.48505 * 109.47417 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47413 * 300.00046 * 14 12 11 18 18 C 1.38345 * 120.24041 * 359.75067 * 11 10 9 19 19 C 1.38223 * 120.30217 * 359.97438 * 18 11 10 20 20 C 1.38542 * 120.06349 * 0.02562 * 19 18 11 21 21 O 1.35839 * 120.11964 * 179.97438 * 20 19 18 22 22 C 1.42903 * 117.00127 * 0.02562 * 21 20 19 23 23 F 1.39904 * 109.46926 * 59.99380 * 22 21 20 24 24 F 1.39901 * 109.46899 * 299.99923 * 22 21 20 25 25 C 1.39363 * 119.75881 * 0.27287 * 8 7 6 26 26 C 1.38007 * 119.87142 * 359.45071 * 25 8 7 27 27 H 1.08996 * 109.47229 * 299.99273 * 1 2 3 28 28 H 1.08991 * 109.47360 * 59.99934 * 1 2 3 29 29 H 1.09008 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46858 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47165 * 300.00701 * 3 2 1 32 32 H 1.09010 * 109.46617 * 60.00239 * 3 2 1 33 33 H 1.08997 * 109.47177 * 299.99332 * 4 2 1 34 34 H 1.08997 * 109.47347 * 60.00099 * 4 2 1 35 35 H 1.09010 * 109.46822 * 179.97438 * 4 2 1 36 36 H 1.07996 * 119.93387 * 359.95826 * 6 5 2 37 37 H 1.07996 * 120.05897 * 180.02562 * 7 6 5 38 38 H 1.08005 * 120.03007 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.47205 * 305.02480 * 12 11 10 40 40 H 0.96707 * 113.99714 * 60.00636 * 13 12 11 41 41 H 1.08002 * 119.85049 * 179.97438 * 18 11 10 42 42 H 1.07999 * 119.96889 * 179.97438 * 19 18 11 43 43 H 1.09002 * 109.47382 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.06283 * 179.70164 * 25 8 7 45 45 H 1.08003 * 119.93919 * 180.27207 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7154 -2.2442 1.4879 7 6 3.1760 -2.8999 2.6116 8 6 3.4092 -2.1857 3.7853 9 6 3.9048 -2.8848 4.9961 10 6 3.2726 -4.0421 5.4436 11 6 3.7341 -4.6859 6.5742 12 6 3.0451 -5.9347 7.0610 13 8 3.2023 -6.9737 6.0926 14 14 3.8018 -6.4717 8.6765 15 1 3.6384 -5.3920 9.6828 16 1 3.1234 -7.7027 9.1560 17 1 5.2472 -6.7490 8.4782 18 6 4.8264 -4.1885 7.2622 19 6 5.4648 -3.0438 6.8235 20 6 5.0122 -2.3876 5.6903 21 8 5.6384 -1.2622 5.2585 22 6 6.7594 -0.8102 6.0209 23 9 7.7431 -1.8049 6.0383 24 9 6.3518 -0.5346 7.3306 25 6 3.1701 -0.8131 3.8189 26 6 2.7150 -0.1668 2.6876 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7565 0.0005 31 1 2.1205 2.2704 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1207 -1.9058 -1.5212 34 1 2.1206 -0.3642 -2.4111 35 1 3.5740 -0.8777 -1.5214 36 1 2.5337 -2.7967 0.5779 37 1 3.3554 -3.9644 2.5814 38 1 2.4195 -4.4332 4.9090 39 1 1.9842 -5.7312 7.2066 40 1 4.1233 -7.2076 5.9127 41 1 5.1819 -4.6970 8.1462 42 1 6.3168 -2.6600 7.3650 43 1 7.1657 0.0944 5.5685 44 1 3.3445 -0.2556 4.7273 45 1 2.5336 0.8976 2.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11652986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:46:49 Heat of formation + Delta-G solvation = -164.790221 kcal Electronic energy + Delta-G solvation = -28824.030661 eV Core-core repulsion = 24565.626585 eV Total energy + Delta-G solvation = -4258.404076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.40824 -48.40401 -41.55370 -39.59044 -39.21137 -37.23638 -33.86861 -32.12280 -31.77508 -30.12513 -29.26017 -28.27775 -28.24862 -27.78966 -25.92899 -24.71204 -23.54231 -22.77539 -21.70078 -20.12201 -19.36664 -18.97688 -18.27518 -17.76107 -17.25742 -16.66353 -16.37228 -16.12220 -15.84446 -15.71941 -15.40083 -15.31153 -15.06878 -14.97505 -14.72985 -14.44750 -14.28561 -14.10070 -14.04592 -14.00820 -13.91858 -13.70808 -13.50366 -13.28944 -13.13294 -13.09049 -13.03786 -12.94402 -12.89051 -12.33563 -12.24623 -12.13338 -11.94232 -11.64347 -10.94283 -10.75722 -10.73313 -10.46033 -10.33401 -9.77714 -9.72180 -9.15676 -0.26510 0.06685 0.54694 0.57706 1.13858 1.41768 1.48641 1.49680 1.87621 1.88130 2.05570 2.11609 2.39861 2.46374 2.69607 2.97655 3.32914 3.45657 3.51504 3.59520 3.60565 3.73290 3.90327 4.04576 4.11251 4.17281 4.36068 4.52557 4.57789 4.67378 4.72185 4.86443 4.86789 4.89336 4.90253 4.91095 4.92174 4.93848 4.94659 5.05086 5.20479 5.24724 5.39781 5.47704 5.61154 5.61446 5.66262 5.69777 5.73428 5.86710 6.16717 6.66975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.125 2.875 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.378 4.378 6 C -0.098 4.098 7 C -0.128 4.128 8 C -0.050 4.050 9 C -0.073 4.073 10 C -0.048 4.048 11 C -0.140 4.140 12 C -0.073 4.073 13 O -0.550 6.550 14 Si 0.978 3.022 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.251 1.251 18 C -0.092 4.092 19 C -0.194 4.194 20 C 0.112 3.888 21 O -0.319 6.319 22 C 0.404 3.596 23 F -0.209 7.209 24 F -0.208 7.208 25 C -0.118 4.118 26 C -0.097 4.097 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.389 0.611 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.230 0.770 44 H 0.116 0.884 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 2.196 -1.863 2.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.568 4.568 4 C -0.569 4.569 5 C -0.417 4.417 6 C -0.116 4.116 7 C -0.146 4.146 8 C -0.050 4.050 9 C -0.074 4.074 10 C -0.066 4.066 11 C -0.141 4.141 12 C -0.184 4.184 13 O -0.357 6.357 14 Si 0.802 3.198 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.175 1.175 18 C -0.109 4.109 19 C -0.212 4.212 20 C 0.068 3.932 21 O -0.237 6.237 22 C 0.315 3.685 23 F -0.191 7.191 24 F -0.190 7.190 25 C -0.136 4.136 26 C -0.115 4.115 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.238 0.762 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.246 0.754 44 H 0.134 0.866 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.172 2.023 -1.133 2.325 hybrid contribution 0.817 -0.100 0.379 0.906 sum 0.988 1.924 -0.754 2.290 Atomic orbital electron populations 1.26290 1.21672 1.04435 1.04517 0.77186 0.65165 0.64726 0.61660 1.26262 1.06428 1.19279 1.04843 1.26275 1.06395 1.08476 1.15747 1.28026 1.03050 0.99533 1.11118 1.21305 0.97091 0.95162 0.98000 1.21453 1.00302 1.00066 0.92807 1.18687 1.00144 0.93793 0.92403 1.18379 0.95274 0.97058 0.96653 1.21066 0.98745 0.91765 0.95033 1.20343 0.97419 0.99182 0.97151 1.24970 1.06113 0.85519 1.01790 1.86494 1.33150 1.54012 1.62035 0.85285 0.79512 0.79693 0.75310 1.18256 1.19589 1.17501 1.21090 0.94810 0.95462 0.99567 1.21526 1.03429 0.98827 0.97453 1.18984 0.93248 0.86995 0.93951 1.86690 1.43586 1.40669 1.52709 1.24250 0.76738 0.90613 0.76944 1.93083 1.63452 1.66375 1.96178 1.93086 1.90624 1.93814 1.41454 1.21336 0.99688 0.93393 0.99154 1.21288 0.97222 1.00582 0.92415 0.91454 0.90691 0.91436 0.91247 0.90665 0.90930 0.90946 0.90669 0.91316 0.84279 0.85714 0.83722 0.85511 0.76198 0.84336 0.84248 0.75447 0.86562 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.47 8.65 113.37 0.98 2.45 16 2 Si 1.13 -6.01 12.31 68.60 0.84 -5.16 16 3 C -0.46 1.96 8.53 113.37 0.97 2.92 16 4 C -0.46 1.85 8.52 113.37 0.97 2.82 16 5 C -0.38 -0.06 4.60 22.31 0.10 0.04 16 6 C -0.10 -0.16 9.28 22.24 0.21 0.05 16 7 C -0.13 -0.55 9.51 22.49 0.21 -0.33 16 8 C -0.05 -0.30 5.27 -20.05 -0.11 -0.41 16 9 C -0.07 -0.44 5.49 -19.96 -0.11 -0.55 16 10 C -0.05 -0.18 9.13 22.47 0.21 0.02 16 11 C -0.14 -0.31 5.35 -19.88 -0.11 -0.41 16 12 C -0.07 0.05 2.80 71.24 0.20 0.24 16 13 O -0.55 -0.21 12.83 -148.98 -1.91 -2.12 16 14 Si 0.98 -0.78 25.13 68.60 1.72 0.95 16 15 H -0.26 -0.17 7.11 99.48 0.71 0.54 16 16 H -0.27 -0.63 7.11 99.48 0.71 0.07 16 17 H -0.25 0.22 7.04 99.48 0.70 0.93 16 18 C -0.09 -0.27 8.66 22.29 0.19 -0.08 16 19 C -0.19 -0.97 8.25 22.34 0.18 -0.78 16 20 C 0.11 0.68 6.40 22.73 0.15 0.83 16 21 O -0.32 -1.15 8.80 -91.74 -0.81 -1.96 16 22 C 0.40 -0.75 5.98 113.37 0.68 -0.07 16 23 F -0.21 -0.42 15.59 44.97 0.70 0.28 16 24 F -0.21 -0.34 15.58 44.97 0.70 0.36 16 25 C -0.12 -0.58 8.79 22.49 0.20 -0.38 16 26 C -0.10 -0.17 9.28 22.24 0.21 0.04 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 30 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.07 -0.33 7.67 -2.38 -0.02 -0.35 16 33 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 36 H 0.14 -0.39 7.40 -2.91 -0.02 -0.41 16 37 H 0.12 0.28 8.04 -2.91 -0.02 0.26 16 38 H 0.15 0.30 8.04 -2.91 -0.02 0.28 16 39 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.39 -2.23 8.70 -74.05 -0.64 -2.88 16 41 H 0.14 -0.03 4.84 -2.91 -0.01 -0.05 16 42 H 0.14 0.56 5.09 -2.91 -0.01 0.55 16 43 H 0.23 -2.75 8.14 -2.39 -0.02 -2.77 16 44 H 0.12 0.50 7.71 -2.91 -0.02 0.48 16 45 H 0.14 -0.37 7.40 -2.91 -0.02 -0.39 16 Total: 0.00 -15.04 380.34 7.49 -7.55 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 1.12 Total: -6.30 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.12 Total: 6.40 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -2.72 Total: -4.08 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 1.40 Total: 0.65 kcal Atomic # 14 Polarization: -6.78 SS G_CDS: 2.57 Total: -4.21 kcal Total: -15.04 7.49 -7.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11652986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.244 kcal (2) G-P(sol) polarization free energy of solvation -15.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds