Wall clock time and date at job start Mon Mar 8 2021 08:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86301 * 109.47227 * 2 1 4 4 C 1.86302 * 109.47074 * 239.99894 * 2 1 3 5 5 C 1.86801 * 109.47043 * 119.99963 * 2 1 3 6 6 C 1.38340 * 119.87162 * 90.00119 * 5 2 1 7 7 C 1.37994 * 120.12418 * 180.02562 * 6 5 2 8 8 C 1.39399 * 119.87581 * 359.97438 * 7 6 5 9 9 C 1.48280 * 120.12668 * 180.02562 * 8 7 6 10 10 C 1.39497 * 119.97855 * 180.02562 * 9 8 7 11 11 C 1.37681 * 120.02265 * 180.25369 * 10 9 8 12 12 C 1.39668 * 119.97557 * 359.51329 * 11 10 9 13 13 C 1.47765 * 120.02170 * 180.23789 * 12 11 10 14 14 N 1.30268 * 125.47494 * 180.29747 * 13 12 11 15 15 C 1.31285 * 117.03469 * 179.97438 * 14 13 12 16 16 C 1.33743 * 115.85218 * 359.97438 * 15 14 13 17 17 C 1.50705 * 125.88919 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46832 * 299.99413 * 17 16 15 19 19 Si 1.86305 * 109.47018 * 180.02562 * 17 16 15 20 20 H 1.48502 * 109.47228 * 59.99653 * 19 17 16 21 21 H 1.48497 * 109.46900 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47023 * 299.99709 * 19 17 16 23 23 S 1.76176 * 125.46895 * 359.97438 * 13 12 11 24 24 C 1.39674 * 119.96134 * 0.50449 * 12 11 10 25 25 C 1.37678 * 119.97380 * 359.72598 * 24 12 11 26 26 C 1.39396 * 119.74334 * 0.27496 * 8 7 6 27 27 C 1.38006 * 119.87324 * 359.47281 * 26 8 7 28 28 H 1.08998 * 109.47480 * 300.00236 * 1 2 3 29 29 H 1.09004 * 109.47631 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47417 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46818 * 299.99857 * 3 2 1 33 33 H 1.08998 * 109.47083 * 59.99522 * 3 2 1 34 34 H 1.09002 * 109.47470 * 300.00159 * 4 2 1 35 35 H 1.09009 * 109.46930 * 60.00164 * 4 2 1 36 36 H 1.09001 * 109.47072 * 179.97438 * 4 2 1 37 37 H 1.07997 * 119.93451 * 0.02562 * 6 5 2 38 38 H 1.08007 * 120.06441 * 179.97438 * 7 6 5 39 39 H 1.08002 * 119.98500 * 359.96793 * 10 9 8 40 40 H 1.07998 * 120.01386 * 179.73895 * 11 10 9 41 41 H 1.08001 * 122.07769 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47353 * 59.99948 * 17 16 15 43 43 H 0.96698 * 114.00457 * 300.00639 * 18 17 16 44 44 H 1.08000 * 120.01042 * 179.75686 * 24 12 11 45 45 H 1.08001 * 119.98975 * 179.97438 * 25 24 12 46 46 H 1.08000 * 120.05946 * 179.69731 * 26 8 7 47 47 H 1.07995 * 119.93450 * 180.22773 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2443 1.4880 7 6 3.1747 -2.9001 2.6118 8 6 3.4079 -2.1858 3.7860 9 6 3.9022 -2.8849 4.9967 10 6 4.1340 -2.1671 6.1701 11 6 4.5979 -2.8144 7.2933 12 6 4.8267 -4.1918 7.2604 13 6 5.3195 -4.8884 8.4668 14 7 5.5731 -6.1632 8.5531 15 6 6.0065 -6.6084 9.7096 16 6 6.1392 -5.6921 10.6747 17 6 6.6166 -5.9522 12.0803 18 8 5.7395 -6.8840 12.7164 19 14 6.6251 -4.3546 13.0388 20 1 5.2506 -3.7938 13.0785 21 1 7.0948 -4.6110 14.4240 22 1 7.5361 -3.3857 12.3780 23 16 5.6662 -4.1267 10.0171 24 6 4.5947 -4.9096 6.0849 25 6 4.1353 -4.2597 4.9615 26 6 3.1697 -0.8128 3.8190 27 6 2.7152 -0.1665 2.6875 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2702 -0.8900 33 1 2.1206 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5212 35 1 2.1206 -0.3644 -2.4112 36 1 3.5739 -0.8779 -1.5214 37 1 2.5346 -2.7966 0.5777 38 1 3.3533 -3.9649 2.5818 39 1 3.9539 -1.1025 6.1962 40 1 4.7813 -2.2578 8.2005 41 1 6.2413 -7.6501 9.8717 42 1 7.6253 -6.3642 12.0511 43 1 4.8227 -6.5826 12.7775 44 1 4.7751 -5.9741 6.0575 45 1 3.9562 -4.8144 4.0523 46 1 3.3440 -0.2552 4.7274 47 1 2.5339 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_11653090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:03 Heat of formation + Delta-G solvation = 13.110792 kcal Electronic energy + Delta-G solvation = -26080.094243 eV Core-core repulsion = 22442.278832 eV Total energy + Delta-G solvation = -3637.815411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.109 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.07229 -40.47107 -39.15272 -37.93049 -34.30481 -32.58750 -32.05380 -31.57132 -30.15298 -29.46467 -28.46533 -28.42796 -27.16570 -25.27538 -24.46745 -23.90213 -22.50605 -21.91462 -20.66221 -19.26532 -18.58520 -18.09225 -16.86024 -16.66465 -16.47012 -16.38445 -16.09949 -15.50882 -15.31287 -15.26167 -15.05691 -14.85038 -14.59193 -14.42935 -14.35038 -14.21020 -14.11043 -13.98802 -13.82346 -13.43683 -13.38647 -13.27679 -13.20703 -13.12354 -13.00413 -12.53184 -12.46236 -12.42618 -12.40281 -12.05457 -11.67011 -11.31758 -10.94960 -10.92251 -10.85563 -10.80396 -10.48193 -10.34562 -10.06236 -9.82330 -9.78939 -8.77604 -1.01726 -0.09054 0.08181 0.35176 0.47801 0.54077 0.83812 0.99225 1.29461 1.38494 1.69308 1.78513 1.82837 1.83048 1.98680 2.52773 2.69288 2.89994 3.12298 3.28377 3.57359 3.65228 3.71045 3.84747 3.95456 4.07947 4.12647 4.26789 4.33041 4.38653 4.43760 4.49229 4.66188 4.68067 4.69709 4.71815 4.73687 4.74247 4.74619 4.76575 4.93496 4.95348 5.02582 5.13429 5.21982 5.28063 5.36765 5.41525 5.49365 5.50859 5.52451 5.61428 5.73291 5.81231 6.09364 6.34763 6.64294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.366 4.366 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.044 4.044 9 C -0.024 4.024 10 C -0.110 4.110 11 C -0.091 4.091 12 C -0.035 4.035 13 C 0.130 3.870 14 N -0.466 5.466 15 C 0.076 3.924 16 C -0.258 4.258 17 C -0.033 4.033 18 O -0.531 6.531 19 Si 0.899 3.101 20 H -0.236 1.236 21 H -0.226 1.226 22 H -0.234 1.234 23 S 0.075 5.925 24 C -0.063 4.063 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.087 4.087 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.181 0.819 42 H 0.130 0.870 43 H 0.379 0.621 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 2.744 -1.213 3.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.408 4.408 6 C -0.105 4.105 7 C -0.135 4.135 8 C -0.044 4.044 9 C -0.025 4.025 10 C -0.128 4.128 11 C -0.111 4.111 12 C -0.039 4.039 13 C -0.144 4.144 14 N -0.179 5.179 15 C -0.077 4.077 16 C -0.378 4.378 17 C -0.146 4.146 18 O -0.336 6.336 19 Si 0.719 3.281 20 H -0.158 1.158 21 H -0.149 1.149 22 H -0.157 1.157 23 S 0.332 5.668 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.105 4.105 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.198 0.802 42 H 0.148 0.852 43 H 0.226 0.774 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.452 3.818 -0.607 3.893 hybrid contribution -0.170 -1.099 0.065 1.114 sum -0.622 2.720 -0.542 2.842 Atomic orbital electron populations 1.26128 1.20474 1.04590 1.04488 0.78185 0.66863 0.66125 0.63751 1.26138 1.06468 1.18570 1.04565 1.26140 1.06472 1.08057 1.15080 1.27464 1.03551 0.99511 1.10251 1.21029 0.97137 0.94620 0.97698 1.21345 0.99694 0.99837 0.92669 1.18787 0.99545 0.93451 0.92604 1.19014 0.97370 0.93260 0.92838 1.21102 0.99585 1.00316 0.91765 1.21077 0.98536 0.92623 0.98877 1.17874 1.02798 0.92665 0.90525 1.25896 1.01282 0.91277 0.95931 1.66610 1.14849 1.11479 1.24930 1.21590 0.98526 1.01630 0.85911 1.26296 1.13163 0.95173 1.03214 1.24272 0.96970 1.04551 0.88835 1.86546 1.22922 1.44722 1.79454 0.86258 0.83662 0.75608 0.82594 1.15837 1.14857 1.15710 1.85003 1.61870 1.11430 1.08517 1.21212 0.95806 1.00702 0.90765 1.21237 0.99564 0.93567 0.98720 1.21334 0.99818 0.93606 0.98850 1.21024 0.97197 0.99714 0.92576 0.91173 0.91042 0.91163 0.91049 0.90954 0.91177 0.91161 0.90955 0.91047 0.85892 0.85850 0.84808 0.85465 0.80200 0.85230 0.77364 0.84265 0.84806 0.85912 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.74 8.65 101.05 0.87 1.62 16 2 Si 1.06 -2.90 12.31 -169.99 -2.09 -4.99 16 3 C -0.45 0.91 8.52 101.05 0.86 1.77 16 4 C -0.45 0.89 8.52 101.05 0.86 1.76 16 5 C -0.37 0.17 4.60 -39.51 -0.18 -0.01 16 6 C -0.09 0.00 9.28 -39.63 -0.37 -0.37 16 7 C -0.12 -0.08 9.43 -39.24 -0.37 -0.45 16 8 C -0.04 -0.06 5.88 -104.90 -0.62 -0.67 16 9 C -0.02 -0.03 5.88 -104.83 -0.62 -0.65 16 10 C -0.11 -0.05 9.41 -39.32 -0.37 -0.42 16 11 C -0.09 -0.07 9.59 -39.25 -0.38 -0.45 16 12 C -0.03 -0.07 5.88 -104.93 -0.62 -0.69 16 13 C 0.13 0.35 7.34 -14.32 -0.11 0.24 16 14 N -0.47 -1.60 10.13 -11.38 -0.12 -1.72 16 15 C 0.08 0.14 11.13 -19.36 -0.22 -0.07 16 16 C -0.26 -0.23 5.76 -35.88 -0.21 -0.44 16 17 C -0.03 0.02 2.99 36.01 0.11 0.13 16 18 O -0.53 0.09 12.87 -35.23 -0.45 -0.36 16 19 Si 0.90 -0.55 26.33 -169.99 -4.48 -5.03 16 20 H -0.24 0.06 7.11 56.52 0.40 0.46 16 21 H -0.23 -0.03 7.11 56.52 0.40 0.37 16 22 H -0.23 -0.01 7.11 56.52 0.40 0.39 16 23 S 0.07 0.09 19.73 -107.50 -2.12 -2.03 16 24 C -0.06 -0.10 9.66 -39.25 -0.38 -0.48 16 25 C -0.11 -0.10 9.41 -39.32 -0.37 -0.47 16 26 C -0.12 -0.07 9.43 -39.24 -0.37 -0.44 16 27 C -0.09 0.01 9.28 -39.63 -0.37 -0.36 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 34 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 35 H 0.07 -0.15 7.96 -51.92 -0.41 -0.56 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.12 -0.24 7.40 -52.49 -0.39 -0.62 16 38 H 0.12 -0.11 6.19 -52.48 -0.33 -0.44 16 39 H 0.13 -0.20 6.19 -52.49 -0.32 -0.53 16 40 H 0.13 -0.10 7.28 -52.49 -0.38 -0.48 16 41 H 0.18 0.06 8.06 -52.49 -0.42 -0.37 16 42 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 43 H 0.38 -1.18 8.70 45.56 0.40 -0.79 16 44 H 0.14 0.18 7.81 -52.49 -0.41 -0.23 16 45 H 0.13 -0.13 6.19 -52.49 -0.32 -0.45 16 46 H 0.12 -0.14 6.19 -52.49 -0.33 -0.47 16 47 H 0.12 -0.25 7.40 -52.49 -0.39 -0.64 16 LS Contribution 403.75 15.07 6.08 6.08 Total: 0.00 -5.99 403.75 -11.79 -17.78 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -5.80 Total: -9.29 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.82 Total: -0.45 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -0.12 Total: -1.72 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -0.45 Total: -0.36 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: -6.57 Total: -10.01 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.12 Total: -2.03 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -5.99 -11.79 -17.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.892 kcal (2) G-P(sol) polarization free energy of solvation -5.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds