Wall clock time and date at job start Mon Mar 8 2021 08:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86301 * 109.47227 * 2 1 4 4 C 1.86302 * 109.47074 * 239.99894 * 2 1 3 5 5 C 1.86801 * 109.47043 * 119.99963 * 2 1 3 6 6 C 1.38340 * 119.87162 * 90.00119 * 5 2 1 7 7 C 1.37994 * 120.12418 * 180.02562 * 6 5 2 8 8 C 1.39399 * 119.87581 * 359.97438 * 7 6 5 9 9 C 1.48280 * 120.12668 * 180.02562 * 8 7 6 10 10 C 1.39497 * 119.97855 * 180.02562 * 9 8 7 11 11 C 1.37681 * 120.02265 * 180.25369 * 10 9 8 12 12 C 1.39668 * 119.97557 * 359.51329 * 11 10 9 13 13 C 1.47765 * 120.02170 * 180.23789 * 12 11 10 14 14 N 1.30268 * 125.47494 * 180.29747 * 13 12 11 15 15 C 1.31285 * 117.03469 * 179.97438 * 14 13 12 16 16 C 1.33743 * 115.85218 * 359.97438 * 15 14 13 17 17 C 1.50705 * 125.88919 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46832 * 299.99413 * 17 16 15 19 19 Si 1.86305 * 109.47018 * 180.02562 * 17 16 15 20 20 H 1.48502 * 109.47228 * 59.99653 * 19 17 16 21 21 H 1.48497 * 109.46900 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47023 * 299.99709 * 19 17 16 23 23 S 1.76176 * 125.46895 * 359.97438 * 13 12 11 24 24 C 1.39674 * 119.96134 * 0.50449 * 12 11 10 25 25 C 1.37678 * 119.97380 * 359.72598 * 24 12 11 26 26 C 1.39396 * 119.74334 * 0.27496 * 8 7 6 27 27 C 1.38006 * 119.87324 * 359.47281 * 26 8 7 28 28 H 1.08998 * 109.47480 * 300.00236 * 1 2 3 29 29 H 1.09004 * 109.47631 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47417 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46818 * 299.99857 * 3 2 1 33 33 H 1.08998 * 109.47083 * 59.99522 * 3 2 1 34 34 H 1.09002 * 109.47470 * 300.00159 * 4 2 1 35 35 H 1.09009 * 109.46930 * 60.00164 * 4 2 1 36 36 H 1.09001 * 109.47072 * 179.97438 * 4 2 1 37 37 H 1.07997 * 119.93451 * 0.02562 * 6 5 2 38 38 H 1.08007 * 120.06441 * 179.97438 * 7 6 5 39 39 H 1.08002 * 119.98500 * 359.96793 * 10 9 8 40 40 H 1.07998 * 120.01386 * 179.73895 * 11 10 9 41 41 H 1.08001 * 122.07769 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47353 * 59.99948 * 17 16 15 43 43 H 0.96698 * 114.00457 * 300.00639 * 18 17 16 44 44 H 1.08000 * 120.01042 * 179.75686 * 24 12 11 45 45 H 1.08001 * 119.98975 * 179.97438 * 25 24 12 46 46 H 1.08000 * 120.05946 * 179.69731 * 26 8 7 47 47 H 1.07995 * 119.93450 * 180.22773 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2443 1.4880 7 6 3.1747 -2.9001 2.6118 8 6 3.4079 -2.1858 3.7860 9 6 3.9022 -2.8849 4.9967 10 6 4.1340 -2.1671 6.1701 11 6 4.5979 -2.8144 7.2933 12 6 4.8267 -4.1918 7.2604 13 6 5.3195 -4.8884 8.4668 14 7 5.5731 -6.1632 8.5531 15 6 6.0065 -6.6084 9.7096 16 6 6.1392 -5.6921 10.6747 17 6 6.6166 -5.9522 12.0803 18 8 5.7395 -6.8840 12.7164 19 14 6.6251 -4.3546 13.0388 20 1 5.2506 -3.7938 13.0785 21 1 7.0948 -4.6110 14.4240 22 1 7.5361 -3.3857 12.3780 23 16 5.6662 -4.1267 10.0171 24 6 4.5947 -4.9096 6.0849 25 6 4.1353 -4.2597 4.9615 26 6 3.1697 -0.8128 3.8190 27 6 2.7152 -0.1665 2.6875 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2702 -0.8900 33 1 2.1206 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5212 35 1 2.1206 -0.3644 -2.4112 36 1 3.5739 -0.8779 -1.5214 37 1 2.5346 -2.7966 0.5777 38 1 3.3533 -3.9649 2.5818 39 1 3.9539 -1.1025 6.1962 40 1 4.7813 -2.2578 8.2005 41 1 6.2413 -7.6501 9.8717 42 1 7.6253 -6.3642 12.0511 43 1 4.8227 -6.5826 12.7775 44 1 4.7751 -5.9741 6.0575 45 1 3.9562 -4.8144 4.0523 46 1 3.3440 -0.2552 4.7274 47 1 2.5339 0.8978 2.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11653090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:01 Heat of formation + Delta-G solvation = 23.971191 kcal Electronic energy + Delta-G solvation = -26079.623301 eV Core-core repulsion = 22442.278832 eV Total energy + Delta-G solvation = -3637.344469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.109 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.12692 -40.52013 -39.14344 -37.91090 -34.32667 -32.59261 -32.08648 -31.55460 -30.14202 -29.31641 -28.27939 -28.25677 -27.20597 -25.31836 -24.46739 -23.93799 -22.49847 -21.91934 -20.72029 -19.32172 -18.60881 -18.07844 -16.86358 -16.65381 -16.48075 -16.39593 -16.11002 -15.54286 -15.34302 -15.27777 -15.06115 -14.82497 -14.57964 -14.43047 -14.34582 -14.05415 -14.03699 -13.84712 -13.69252 -13.37138 -13.33878 -13.10638 -13.09719 -13.00416 -12.95515 -12.53309 -12.45769 -12.42739 -12.39789 -12.05083 -11.63398 -11.30377 -10.95650 -10.77556 -10.75602 -10.73929 -10.53819 -10.41769 -10.10818 -9.82192 -9.79752 -8.81029 -1.09786 -0.12631 -0.00966 0.30798 0.39481 0.56677 0.81459 1.01914 1.33083 1.41191 1.74540 1.81416 1.86790 2.04449 2.13226 2.66659 2.68718 2.83308 3.12580 3.37839 3.56202 3.66128 3.71022 3.83467 3.90971 4.12715 4.16364 4.25504 4.31657 4.41422 4.47927 4.50439 4.70553 4.73863 4.85696 4.85967 4.89652 4.90502 4.90986 4.91560 4.92426 4.95745 5.01669 5.17076 5.19080 5.27622 5.31265 5.50017 5.60745 5.61778 5.69074 5.71148 5.74303 5.78166 6.15017 6.53207 6.53635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.378 4.378 6 C -0.100 4.100 7 C -0.132 4.132 8 C -0.061 4.061 9 C -0.031 4.031 10 C -0.113 4.113 11 C -0.092 4.092 12 C -0.050 4.050 13 C 0.115 3.885 14 N -0.488 5.488 15 C 0.061 3.939 16 C -0.251 4.251 17 C -0.029 4.029 18 O -0.542 6.542 19 Si 0.922 3.078 20 H -0.240 1.240 21 H -0.235 1.235 22 H -0.243 1.243 23 S 0.086 5.914 24 C -0.073 4.073 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.191 0.809 42 H 0.143 0.857 43 H 0.391 0.609 44 H 0.136 0.864 45 H 0.147 0.853 46 H 0.136 0.864 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 3.505 -1.329 3.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.417 4.417 6 C -0.118 4.118 7 C -0.150 4.150 8 C -0.061 4.061 9 C -0.032 4.032 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.054 4.054 13 C -0.158 4.158 14 N -0.202 5.202 15 C -0.091 4.091 16 C -0.372 4.372 17 C -0.143 4.143 18 O -0.349 6.349 19 Si 0.743 3.257 20 H -0.163 1.163 21 H -0.158 1.158 22 H -0.167 1.167 23 S 0.343 5.657 24 C -0.095 4.095 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.208 0.792 42 H 0.161 0.839 43 H 0.240 0.760 44 H 0.154 0.846 45 H 0.164 0.836 46 H 0.154 0.846 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.626 4.572 -0.714 4.669 hybrid contribution -0.141 -1.318 0.098 1.329 sum -0.767 3.254 -0.616 3.399 Atomic orbital electron populations 1.26302 1.21748 1.04407 1.04532 0.77162 0.65084 0.64675 0.61713 1.26275 1.06412 1.19347 1.04873 1.26292 1.06404 1.08494 1.15812 1.28024 1.02843 0.99606 1.11246 1.21336 0.97086 0.95168 0.98161 1.21594 0.99930 1.00547 0.92934 1.18934 1.00391 0.93993 0.92812 1.19179 0.97319 0.93440 0.93245 1.21346 0.99053 1.01257 0.91365 1.21244 0.98242 0.92241 0.99550 1.18050 1.03464 0.93330 0.90587 1.26050 1.01631 0.91381 0.96713 1.66610 1.15577 1.12112 1.25890 1.21803 0.99048 1.02397 0.85834 1.26513 1.12257 0.94747 1.03686 1.24353 0.97523 1.04663 0.87712 1.86521 1.23943 1.45110 1.79309 0.85939 0.82960 0.75096 0.81742 1.16310 1.15785 1.16653 1.84889 1.61552 1.11516 1.07708 1.21259 0.96391 1.00681 0.91134 1.21398 0.99336 0.93785 0.98987 1.21602 0.99836 0.93594 0.99783 1.21350 0.97043 1.00773 0.92538 0.91401 0.90744 0.91478 0.91286 0.90738 0.90835 0.90937 0.90736 0.91314 0.84315 0.84980 0.82982 0.84155 0.79178 0.83923 0.76001 0.84603 0.83552 0.84625 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.76 8.65 113.37 0.98 2.74 16 2 Si 1.13 -6.91 12.31 68.60 0.84 -6.07 16 3 C -0.46 2.23 8.52 113.37 0.97 3.20 16 4 C -0.46 2.10 8.52 113.37 0.97 3.07 16 5 C -0.38 0.47 4.60 22.32 0.10 0.58 16 6 C -0.10 0.00 9.28 22.24 0.21 0.20 16 7 C -0.13 -0.26 9.43 22.49 0.21 -0.04 16 8 C -0.06 -0.19 5.88 -20.05 -0.12 -0.31 16 9 C -0.03 -0.10 5.88 -20.00 -0.12 -0.21 16 10 C -0.11 -0.14 9.41 22.44 0.21 0.07 16 11 C -0.09 -0.20 9.59 22.48 0.22 0.02 16 12 C -0.05 -0.27 5.88 -20.07 -0.12 -0.39 16 13 C 0.12 0.74 7.34 87.45 0.64 1.39 16 14 N -0.49 -3.93 10.13 -189.91 -1.92 -5.86 16 15 C 0.06 0.27 11.13 83.75 0.93 1.20 16 16 C -0.25 -0.48 5.76 24.67 0.14 -0.34 16 17 C -0.03 0.05 2.99 71.24 0.21 0.26 16 18 O -0.54 0.45 12.87 -148.98 -1.92 -1.47 16 19 Si 0.92 -1.35 26.33 68.60 1.81 0.45 16 20 H -0.24 0.20 7.11 99.48 0.71 0.90 16 21 H -0.24 -0.01 7.11 99.48 0.71 0.70 16 22 H -0.24 0.00 7.11 99.48 0.71 0.71 16 23 S 0.09 0.24 19.73 -56.49 -1.11 -0.88 16 24 C -0.07 -0.35 9.66 22.48 0.22 -0.13 16 25 C -0.12 -0.34 9.41 22.44 0.21 -0.13 16 26 C -0.13 -0.16 9.43 22.49 0.21 0.05 16 27 C -0.10 0.04 9.28 22.24 0.21 0.25 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 30 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 33 H 0.07 -0.39 7.67 -2.39 -0.02 -0.41 16 34 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 35 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.14 -0.57 7.40 -2.91 -0.02 -0.59 16 38 H 0.13 -0.15 6.19 -2.91 -0.02 -0.17 16 39 H 0.15 -0.50 6.19 -2.91 -0.02 -0.52 16 40 H 0.14 -0.19 7.28 -2.91 -0.02 -0.21 16 41 H 0.19 0.22 8.06 -2.91 -0.02 0.19 16 42 H 0.14 -0.63 7.96 -2.39 -0.02 -0.65 16 43 H 0.39 -2.58 8.70 -74.06 -0.64 -3.22 16 44 H 0.14 0.63 7.81 -2.91 -0.02 0.61 16 45 H 0.15 -0.12 6.19 -2.91 -0.02 -0.14 16 46 H 0.14 -0.36 6.19 -2.91 -0.02 -0.38 16 47 H 0.14 -0.69 7.40 -2.91 -0.02 -0.71 16 Total: 0.00 -13.83 403.75 5.08 -8.74 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: 1.11 Total: -6.39 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.28 Total: 11.46 kcal Atomic # 7 Polarization: -3.93 SS G_CDS: -1.92 Total: -5.86 kcal Atomic # 8 Polarization: 0.45 SS G_CDS: -1.92 Total: -1.47 kcal Atomic # 14 Polarization: -8.27 SS G_CDS: 2.65 Total: -5.62 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.11 Total: -0.88 kcal Total: -13.83 5.08 -8.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.715 kcal (2) G-P(sol) polarization free energy of solvation -13.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds