Wall clock time and date at job start Mon Mar 8 2021 08:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37993 * 119.94009 * 2 1 4 4 C 1.39357 * 119.88065 * 179.97438 * 3 2 1 5 5 C 1.48394 * 120.12328 * 180.02562 * 4 3 2 6 6 C 1.39336 * 120.11635 * 359.69528 * 5 4 3 7 7 C 1.38022 * 119.87171 * 179.81013 * 6 5 4 8 8 C 1.38316 * 120.12195 * 0.45302 * 7 6 5 9 9 Si 1.86804 * 119.87708 * 179.76554 * 8 7 6 10 10 C 1.86301 * 109.46818 * 270.01503 * 9 8 7 11 11 C 1.86296 * 109.47429 * 30.01609 * 9 8 7 12 12 C 1.86303 * 109.47083 * 150.01949 * 9 8 7 13 13 C 1.38327 * 120.24610 * 359.77828 * 8 7 6 14 14 C 1.38016 * 120.11856 * 0.02562 * 13 8 7 15 15 C 1.39321 * 119.75522 * 359.97438 * 4 3 2 16 16 C 1.38043 * 119.87797 * 0.28248 * 15 4 3 17 17 C 1.38301 * 120.11839 * 359.43864 * 16 15 4 18 18 C 1.50703 * 119.87603 * 180.25845 * 17 16 15 19 19 O 1.42903 * 109.46484 * 105.29995 * 18 17 16 20 20 Si 1.86298 * 109.47113 * 345.30507 * 18 17 16 21 21 H 1.48506 * 109.47294 * 59.99472 * 20 18 17 22 22 H 1.48497 * 109.47028 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46859 * 299.99679 * 20 18 17 24 24 H 1.08994 * 109.47057 * 90.00378 * 1 2 3 25 25 H 1.09001 * 109.46829 * 210.00200 * 1 2 3 26 26 H 1.08996 * 109.47303 * 330.00077 * 1 2 3 27 27 H 1.08008 * 120.05969 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.06451 * 0.02562 * 6 5 4 29 29 H 1.08006 * 119.93763 * 180.21235 * 7 6 5 30 30 H 1.09003 * 109.46760 * 60.00535 * 10 9 8 31 31 H 1.08996 * 109.47283 * 179.97438 * 10 9 8 32 32 H 1.08992 * 109.47433 * 300.00166 * 10 9 8 33 33 H 1.08999 * 109.47053 * 59.99972 * 11 9 8 34 34 H 1.09001 * 109.47268 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47132 * 300.00687 * 11 9 8 36 36 H 1.09004 * 109.46794 * 59.99737 * 12 9 8 37 37 H 1.09001 * 109.47043 * 179.97438 * 12 9 8 38 38 H 1.08999 * 109.46876 * 299.99708 * 12 9 8 39 39 H 1.07993 * 119.94194 * 179.97438 * 13 8 7 40 40 H 1.07995 * 120.06239 * 179.97438 * 14 13 8 41 41 H 1.08002 * 120.05673 * 179.97438 * 15 4 3 42 42 H 1.08004 * 119.93623 * 179.72472 * 16 15 4 43 43 H 1.08993 * 109.47193 * 225.30182 * 18 17 16 44 44 H 0.96701 * 114.00400 * 299.99572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1958 0.0000 4 6 3.5893 1.1943 0.0005 5 6 4.3354 2.4771 0.0011 6 6 3.6450 3.6874 -0.0053 7 6 4.3440 4.8775 -0.0008 8 6 5.7271 4.8702 0.0007 9 14 6.6663 6.4850 0.0002 10 6 6.9798 7.0204 -1.7565 11 6 5.6630 7.7872 0.8766 12 6 8.2928 6.2577 0.8798 13 6 6.4176 3.6715 0.0022 14 6 5.7287 2.4755 0.0017 15 6 4.2795 -0.0159 0.0016 16 6 3.5804 -1.2062 -0.0038 17 6 2.1974 -1.1988 0.0015 18 6 1.4398 -2.5016 0.0015 19 8 0.8980 -2.7374 1.3027 20 14 2.5945 -3.8915 -0.4515 21 1 3.6985 -3.9609 0.5393 22 1 1.8481 -5.1753 -0.4509 23 1 3.1576 -3.6464 -1.8036 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6557 2.1312 -0.0004 28 1 2.5651 3.6942 -0.0103 29 1 3.8099 5.8163 -0.0022 30 1 6.0282 7.1534 -2.2711 31 1 7.5274 7.9628 -1.7568 32 1 7.5668 6.2585 -2.2693 33 1 5.4795 7.4739 1.9044 34 1 6.2112 8.7293 0.8767 35 1 4.7113 7.9201 0.3620 36 1 8.8798 5.4957 0.3669 37 1 8.8410 7.1998 0.8791 38 1 8.1093 5.9444 1.9075 39 1 7.4975 3.6715 0.0029 40 1 6.2687 1.5403 0.0025 41 1 5.3595 -0.0227 0.0016 42 1 4.1145 -2.1449 -0.0074 43 1 0.6295 -2.4506 -0.7257 44 1 1.5638 -2.7946 2.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11653150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:13 Heat of formation + Delta-G solvation = -28.368986 kcal Electronic energy + Delta-G solvation = -21252.621879 eV Core-core repulsion = 18257.723615 eV Total energy + Delta-G solvation = -2994.898264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13505 -39.62040 -37.53269 -34.30926 -33.36382 -31.89592 -30.52043 -29.34887 -28.37733 -28.27135 -28.07524 -26.37484 -24.00757 -23.41195 -22.34729 -21.04626 -18.63393 -17.96764 -17.05131 -16.61545 -16.42076 -15.90888 -15.57918 -15.20281 -14.88682 -14.69265 -14.62564 -14.47402 -14.08770 -14.02258 -13.89531 -13.71165 -13.68592 -13.46272 -13.17747 -13.11209 -13.08531 -12.96614 -12.83310 -12.73094 -12.49191 -12.19656 -11.94678 -11.79599 -11.42394 -11.02037 -10.77068 -10.75390 -10.39553 -10.38750 -9.82524 -9.75715 -8.94170 -0.39520 0.33566 0.53934 0.80771 1.15691 1.41108 1.51506 1.85332 1.88724 2.03217 2.10061 2.59885 2.67324 3.10895 3.49970 3.59098 3.69221 3.77627 3.88621 4.11992 4.12323 4.26948 4.32541 4.47974 4.57124 4.60863 4.72975 4.79016 4.84444 4.84624 4.84876 4.88587 4.89386 4.89940 4.90704 4.98773 4.99619 5.16724 5.18657 5.29270 5.31057 5.47724 5.57777 5.59651 5.61141 5.67661 5.70437 5.75889 5.93360 6.13694 6.67767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.123 4.123 4 C -0.048 4.048 5 C -0.057 4.057 6 C -0.136 4.136 7 C -0.098 4.098 8 C -0.381 4.381 9 Si 1.126 2.874 10 C -0.463 4.463 11 C -0.462 4.462 12 C -0.462 4.462 13 C -0.098 4.098 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.077 4.077 19 O -0.548 6.548 20 Si 0.981 3.019 21 H -0.249 1.249 22 H -0.273 1.273 23 H -0.262 1.262 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 1.771 -0.002 2.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.049 4.049 5 C -0.057 4.057 6 C -0.153 4.153 7 C -0.116 4.116 8 C -0.420 4.420 9 Si 1.313 2.687 10 C -0.569 4.569 11 C -0.569 4.569 12 C -0.569 4.569 13 C -0.116 4.116 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.128 4.128 18 C -0.187 4.187 19 O -0.355 6.355 20 Si 0.806 3.194 21 H -0.173 1.173 22 H -0.198 1.198 23 H -0.186 1.186 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.140 0.860 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.478 1.034 -0.558 1.888 hybrid contribution 0.111 0.112 0.328 0.363 sum 1.589 1.145 -0.230 1.972 Atomic orbital electron populations 1.20927 0.89806 1.03960 1.03103 1.19919 0.97133 0.91911 0.97280 1.21355 0.93231 0.98485 1.00955 1.19022 0.93354 0.92597 0.99881 1.18977 0.93667 0.92188 1.00911 1.21546 1.00447 0.92353 1.00998 1.21339 0.94901 0.97982 0.97382 1.28045 1.00135 1.12649 1.01164 0.77171 0.64469 0.61107 0.65908 1.26292 1.04901 1.05954 1.19779 1.26276 1.09606 1.12803 1.08226 1.26271 1.17233 1.05120 1.08250 1.21344 1.00795 0.92096 0.97349 1.21558 0.93319 0.99492 1.00960 1.21363 1.00809 0.91340 1.00506 1.21232 0.93780 0.98853 1.00584 1.20375 0.93714 0.96002 1.02706 1.24976 1.05077 0.99273 0.89415 1.86474 1.37998 1.94441 1.16596 0.85245 0.77322 0.76439 0.80434 1.17274 1.19818 1.18617 0.90249 0.90140 0.90999 0.84679 0.85298 0.84277 0.91478 0.90655 0.91452 0.91325 0.90642 0.90935 0.90905 0.90646 0.91309 0.84207 0.85073 0.84249 0.84581 0.86050 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.05 9.32 71.24 0.66 0.61 16 2 C -0.06 -0.22 5.87 -19.90 -0.12 -0.33 16 3 C -0.12 -0.52 9.08 22.48 0.20 -0.32 16 4 C -0.05 -0.26 5.88 -20.04 -0.12 -0.38 16 5 C -0.06 -0.31 5.88 -20.04 -0.12 -0.42 16 6 C -0.14 -0.51 9.43 22.48 0.21 -0.30 16 7 C -0.10 -0.14 9.28 22.24 0.21 0.07 16 8 C -0.38 -0.01 4.60 22.31 0.10 0.09 16 9 Si 1.13 -6.06 12.31 68.60 0.84 -5.22 16 10 C -0.46 1.48 8.65 113.37 0.98 2.46 16 11 C -0.46 1.87 8.52 113.37 0.97 2.84 16 12 C -0.46 1.91 8.52 113.37 0.97 2.88 16 13 C -0.10 -0.12 9.28 22.24 0.21 0.09 16 14 C -0.14 -0.47 9.43 22.48 0.21 -0.26 16 15 C -0.12 -0.44 9.43 22.48 0.21 -0.22 16 16 C -0.13 -0.31 8.64 22.24 0.19 -0.12 16 17 C -0.13 -0.33 5.27 -19.82 -0.10 -0.44 16 18 C -0.08 0.00 1.88 71.24 0.13 0.14 16 19 O -0.55 -0.35 11.92 -148.98 -1.78 -2.13 16 20 Si 0.98 -0.46 25.47 68.60 1.75 1.29 16 21 H -0.25 0.30 6.74 99.48 0.67 0.97 16 22 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 23 H -0.26 -0.39 7.11 99.48 0.71 0.32 16 24 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.08 0.11 6.19 -2.39 -0.01 0.10 16 26 H 0.07 -0.06 8.08 -2.39 -0.02 -0.08 16 27 H 0.14 0.19 6.21 -2.91 -0.02 0.17 16 28 H 0.13 0.12 6.21 -2.91 -0.02 0.10 16 29 H 0.14 -0.42 7.40 -2.91 -0.02 -0.44 16 30 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H 0.07 -0.32 7.67 -2.39 -0.02 -0.34 16 36 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 37 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 38 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.14 -0.46 7.40 -2.91 -0.02 -0.49 16 40 H 0.13 0.03 6.21 -2.91 -0.02 0.01 16 41 H 0.14 0.00 6.21 -2.91 -0.02 -0.02 16 42 H 0.14 -0.12 4.86 -2.91 -0.01 -0.13 16 43 H 0.12 -0.17 7.38 -2.39 -0.02 -0.19 16 44 H 0.39 -2.03 8.70 -74.06 -0.64 -2.67 16 Total: 0.00 -11.44 353.66 6.69 -4.75 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: 1.07 Total: -5.08 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.80 Total: 6.38 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -1.78 Total: -2.13 kcal Atomic # 14 Polarization: -6.52 SS G_CDS: 2.59 Total: -3.93 kcal Total: -11.44 6.69 -4.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.616 kcal (2) G-P(sol) polarization free energy of solvation -11.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds