Wall clock time and date at job start Mon Mar 8 2021 08:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35843 * 117.00318 * 2 1 4 4 C 1.39800 * 120.12217 * 275.45729 * 3 2 1 5 5 C 1.48329 * 120.14793 * 0.02562 * 4 3 2 6 6 C 1.39366 * 120.12202 * 303.94489 * 5 4 3 7 7 C 1.38017 * 119.86755 * 179.72409 * 6 5 4 8 8 C 1.38317 * 120.12777 * 0.55140 * 7 6 5 9 9 Si 1.86800 * 119.87652 * 179.70147 * 8 7 6 10 10 C 1.86302 * 109.47101 * 270.02202 * 9 8 7 11 11 C 1.86296 * 109.47000 * 30.02100 * 9 8 7 12 12 C 1.86303 * 109.47142 * 150.02295 * 9 8 7 13 13 C 1.38330 * 120.25129 * 359.72253 * 8 7 6 14 14 C 1.38013 * 120.12083 * 359.97438 * 13 8 7 15 15 C 1.39297 * 119.70044 * 179.97438 * 4 3 2 16 16 C 1.38005 * 119.93231 * 0.02562 * 15 4 3 17 17 C 1.38390 * 120.23989 * 359.97438 * 16 15 4 18 18 C 1.38184 * 120.30248 * 359.72743 * 17 16 15 19 19 C 1.50699 * 119.97211 * 180.29474 * 18 17 16 20 20 O 1.42900 * 109.46869 * 105.25257 * 19 18 17 21 21 Si 1.86306 * 109.46930 * 345.25571 * 19 18 17 22 22 H 1.48499 * 109.46918 * 179.97438 * 21 19 18 23 23 H 1.48499 * 109.47203 * 299.99990 * 21 19 18 24 24 H 1.48500 * 109.46936 * 59.99765 * 21 19 18 25 25 H 1.08995 * 109.46875 * 175.03195 * 1 2 3 26 26 H 1.08998 * 109.46816 * 295.03258 * 1 2 3 27 27 H 1.08999 * 109.47168 * 55.03251 * 1 2 3 28 28 H 1.07997 * 120.06327 * 359.97432 * 6 5 4 29 29 H 1.08003 * 119.93227 * 180.25150 * 7 6 5 30 30 H 1.09001 * 109.47342 * 59.99637 * 10 9 8 31 31 H 1.08997 * 109.47384 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.46738 * 300.00092 * 10 9 8 33 33 H 1.08994 * 109.47293 * 60.00331 * 11 9 8 34 34 H 1.09001 * 109.47233 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47340 * 300.00060 * 11 9 8 36 36 H 1.08994 * 109.47102 * 60.00234 * 12 9 8 37 37 H 1.09001 * 109.47074 * 180.02562 * 12 9 8 38 38 H 1.09001 * 109.46831 * 299.99906 * 12 9 8 39 39 H 1.07991 * 119.93919 * 179.97438 * 13 8 7 40 40 H 1.08000 * 120.06312 * 180.02562 * 14 13 8 41 41 H 1.08003 * 120.03377 * 179.97438 * 15 4 3 42 42 H 1.07999 * 119.87936 * 180.02562 * 16 15 4 43 43 H 1.08003 * 119.84668 * 180.02562 * 17 16 15 44 44 H 1.08999 * 109.47189 * 225.25366 * 19 18 17 45 45 H 0.96700 * 114.00116 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 2.2619 1.8876 -1.2037 5 6 1.8183 1.2881 -2.4859 6 6 2.2586 0.0180 -2.8535 7 6 1.8380 -0.5372 -4.0450 8 6 0.9902 0.1692 -4.8790 9 14 0.4319 -0.5855 -6.4940 10 6 1.6345 -0.1286 -7.8415 11 6 0.3659 -2.4395 -6.3230 12 6 -1.2613 0.0588 -6.9281 13 6 0.5545 1.4326 -4.5219 14 6 0.9637 1.9951 -3.3299 15 6 2.8947 3.1285 -1.1935 16 6 3.3052 3.6823 0.0021 17 6 3.0899 3.0096 1.1921 18 6 2.4576 1.7809 1.1940 19 6 2.2211 1.0578 2.4948 20 8 0.8404 1.1560 2.8501 21 14 3.2630 1.8297 3.8326 22 1 3.0295 1.1175 5.1146 23 1 4.6977 1.7278 3.4634 24 1 2.8917 3.2593 3.9862 25 1 -0.3633 -1.0238 -0.0890 26 1 -0.3633 0.4348 0.9311 27 1 -0.3633 0.5890 -0.8421 28 1 2.9244 -0.5324 -2.2053 29 1 2.1753 -1.5231 -4.3290 30 1 2.6253 -0.5055 -7.5875 31 1 1.3091 -0.5694 -8.7838 32 1 1.6731 0.9561 -7.9415 33 1 -0.3377 -2.7068 -5.5347 34 1 0.0397 -2.8799 -7.2652 35 1 1.3566 -2.8165 -6.0690 36 1 -1.2227 1.1435 -7.0281 37 1 -1.5873 -0.3819 -7.8702 38 1 -1.9649 -0.2085 -6.1396 39 1 -0.1070 1.9797 -5.1770 40 1 0.6226 2.9813 -3.0518 41 1 3.0648 3.6563 -2.1203 42 1 3.7954 4.6447 0.0091 43 1 3.4134 3.4491 2.1242 44 1 2.4935 0.0085 2.3820 45 1 0.6152 0.7123 3.6793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11653250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:19 Heat of formation + Delta-G solvation = -54.784268 kcal Electronic energy + Delta-G solvation = -24179.626974 eV Core-core repulsion = 20864.901066 eV Total energy + Delta-G solvation = -3314.725909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49616 -39.57593 -38.31416 -37.57136 -33.85957 -32.04074 -31.79641 -30.04906 -29.28660 -28.28912 -28.26430 -27.85199 -26.64001 -24.30342 -23.44196 -22.48331 -21.53524 -18.94092 -18.52426 -17.89862 -17.45291 -16.67140 -16.46290 -16.03446 -15.73315 -15.70816 -15.33490 -14.80037 -14.69866 -14.41256 -14.32837 -14.04980 -13.99104 -13.74001 -13.66769 -13.44032 -13.40300 -13.26866 -13.10826 -13.10038 -12.96211 -12.79952 -12.38696 -12.31661 -12.06178 -11.96631 -11.74115 -11.04066 -10.88359 -10.75028 -10.71884 -10.32695 -10.16254 -9.80230 -9.74999 -9.24706 -0.18601 0.08803 0.52909 0.55570 1.11903 1.43241 1.48537 1.85664 1.86123 2.03915 2.10497 2.33267 2.67919 2.85515 2.97515 3.41819 3.54641 3.81785 3.95135 4.07721 4.14269 4.20686 4.27643 4.40487 4.42275 4.45452 4.53581 4.56181 4.70431 4.77139 4.84773 4.85267 4.85605 4.89158 4.89882 4.90455 4.91465 4.97280 5.16135 5.21895 5.27717 5.34869 5.48036 5.59487 5.59749 5.65397 5.67079 5.68411 5.71817 6.14580 6.47602 6.76662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.084 4.084 5 C -0.050 4.050 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.378 4.378 9 Si 1.125 2.875 10 C -0.462 4.462 11 C -0.462 4.462 12 C -0.460 4.460 13 C -0.097 4.097 14 C -0.130 4.130 15 C -0.095 4.095 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.081 4.081 20 O -0.559 6.559 21 Si 0.987 3.013 22 H -0.253 1.253 23 H -0.260 1.260 24 H -0.258 1.258 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.140 0.860 44 H 0.080 0.920 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 0.035 -0.605 0.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.258 6.258 3 C 0.070 3.930 4 C -0.085 4.085 5 C -0.050 4.050 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.417 4.417 9 Si 1.312 2.688 10 C -0.568 4.568 11 C -0.569 4.569 12 C -0.567 4.567 13 C -0.115 4.115 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.108 4.108 19 C -0.190 4.190 20 O -0.368 6.368 21 Si 0.810 3.190 22 H -0.177 1.177 23 H -0.184 1.184 24 H -0.183 1.183 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.191 0.584 -0.436 0.753 hybrid contribution -0.249 -0.304 0.479 0.619 sum -0.440 0.279 0.043 0.523 Atomic orbital electron populations 1.23064 0.77604 1.03636 1.00963 1.85879 1.20997 1.24588 1.94301 1.18632 0.96741 0.86385 0.91195 1.19418 1.01395 0.95336 0.92305 1.18725 0.98389 0.94877 0.92977 1.21343 1.00229 0.94531 0.97381 1.21276 0.96708 1.00101 0.93482 1.28031 1.00531 0.99076 1.14038 0.77194 0.65580 0.64982 0.60998 1.26278 1.11564 1.05525 1.13474 1.26281 1.04612 1.21178 1.04867 1.26253 1.18131 1.06777 1.05587 1.21304 0.98704 0.95739 0.95717 1.21445 0.98190 1.00036 0.95121 1.21417 0.96776 0.93593 0.99510 1.21384 0.99689 1.01118 0.91222 1.21314 0.99019 0.93544 0.99900 1.19775 1.01664 0.95470 0.93938 1.24772 0.90208 1.03796 1.00245 1.86430 1.23550 1.80043 1.46728 0.85185 0.77742 0.79637 0.76417 1.17715 1.18450 1.18291 0.87864 0.92168 0.94690 0.87057 0.84634 0.91522 0.90628 0.91341 0.91352 0.90602 0.91081 0.90850 0.90604 0.91313 0.84143 0.85777 0.83835 0.82479 0.84261 0.90240 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 11.00 113.37 1.25 1.46 16 2 O -0.34 -3.05 8.62 -91.79 -0.79 -3.84 16 3 C 0.11 1.01 5.64 22.73 0.13 1.14 16 4 C -0.08 -0.64 5.42 -19.96 -0.11 -0.75 16 5 C -0.05 -0.36 4.68 -20.05 -0.09 -0.45 16 6 C -0.12 -0.82 8.97 22.49 0.20 -0.61 16 7 C -0.10 -0.33 9.28 22.24 0.21 -0.12 16 8 C -0.38 -0.35 4.60 22.31 0.10 -0.25 16 9 Si 1.13 -5.37 12.31 68.60 0.84 -4.53 16 10 C -0.46 1.30 8.65 113.37 0.98 2.28 16 11 C -0.46 1.50 8.52 113.37 0.97 2.47 16 12 C -0.46 1.77 8.52 113.37 0.97 2.74 16 13 C -0.10 -0.19 9.28 22.24 0.21 0.02 16 14 C -0.13 -0.61 9.61 22.49 0.22 -0.40 16 15 C -0.10 -0.39 9.61 22.47 0.22 -0.17 16 16 C -0.12 -0.25 10.03 22.25 0.22 -0.03 16 17 C -0.12 -0.49 8.65 22.29 0.19 -0.30 16 18 C -0.11 -0.72 5.30 -19.79 -0.10 -0.82 16 19 C -0.08 -0.20 2.37 71.24 0.17 -0.03 16 20 O -0.56 -1.02 11.44 -148.98 -1.70 -2.73 16 21 Si 0.99 -0.10 25.48 68.60 1.75 1.65 16 22 H -0.25 0.18 7.11 99.48 0.71 0.88 16 23 H -0.26 -0.44 7.11 99.48 0.71 0.26 16 24 H -0.26 -0.36 6.74 99.48 0.67 0.31 16 25 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.06 0.32 6.68 -2.39 -0.02 0.30 16 27 H 0.03 0.22 7.80 -2.39 -0.02 0.20 16 28 H 0.11 0.88 8.06 -2.91 -0.02 0.85 16 29 H 0.14 -0.08 7.40 -2.91 -0.02 -0.11 16 30 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.18 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 36 H 0.07 -0.32 7.67 -2.39 -0.02 -0.34 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.14 -0.39 7.40 -2.92 -0.02 -0.41 16 40 H 0.12 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.14 0.08 8.06 -2.91 -0.02 0.05 16 42 H 0.16 -0.57 8.06 -2.91 -0.02 -0.60 16 43 H 0.14 0.11 4.87 -2.91 -0.01 0.10 16 44 H 0.08 0.14 7.82 -2.39 -0.02 0.12 16 45 H 0.40 -2.83 8.74 -74.06 -0.65 -3.48 16 Total: 0.00 -13.48 371.09 6.86 -6.63 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: 1.04 Total: -3.36 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.72 Total: 6.17 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -2.50 Total: -6.57 kcal Atomic # 14 Polarization: -5.47 SS G_CDS: 2.59 Total: -2.87 kcal Total: -13.48 6.86 -6.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.157 kcal (2) G-P(sol) polarization free energy of solvation -13.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds