Wall clock time and date at job start Mon Mar 8 2021 08:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86294 * 109.47545 * 2 1 4 4 C 1.86309 * 109.46902 * 239.99820 * 2 1 3 5 5 C 1.86798 * 109.47290 * 120.00543 * 2 1 3 6 6 C 1.38318 * 119.88351 * 89.99500 * 5 2 1 7 7 C 1.38022 * 120.12422 * 180.02562 * 6 5 2 8 8 C 1.39340 * 119.87351 * 359.97438 * 7 6 5 9 9 C 1.48393 * 120.11627 * 180.02562 * 8 7 6 10 10 C 1.39352 * 120.09346 * 0.02562 * 9 8 7 11 11 C 1.38075 * 119.98934 * 180.02562 * 10 9 8 12 12 C 1.38194 * 120.18746 * 359.97353 * 11 10 9 13 13 C 1.38852 * 120.18635 * 0.02562 * 12 11 10 14 14 O 1.35891 * 120.00213 * 179.97438 * 13 12 11 15 15 C 1.35882 * 117.99556 * 6.11523 * 14 13 12 16 16 C 1.38755 * 120.06405 * 247.13050 * 15 14 13 17 17 C 1.38132 * 119.94760 * 180.32296 * 16 15 14 18 18 C 1.38272 * 120.05811 * 359.93758 * 17 16 15 19 19 C 1.50698 * 119.94436 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47313 * 120.01477 * 19 18 17 21 21 Si 1.86305 * 109.46914 * 0.02562 * 19 18 17 22 22 H 1.48498 * 109.47040 * 60.00489 * 21 19 18 23 23 H 1.48504 * 109.47132 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47343 * 300.00375 * 21 19 18 25 25 C 1.38272 * 120.11554 * 0.03624 * 18 17 16 26 26 C 1.38143 * 120.05705 * 0.02562 * 25 18 17 27 27 C 1.38532 * 120.00196 * 0.25876 * 13 12 11 28 28 C 1.39329 * 119.76128 * 0.27719 * 8 7 6 29 29 C 1.38022 * 119.87697 * 359.45144 * 28 8 7 30 30 H 1.08999 * 109.47008 * 300.00134 * 1 2 3 31 31 H 1.09002 * 109.46884 * 59.99523 * 1 2 3 32 32 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47222 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47419 * 300.00150 * 3 2 1 35 35 H 1.08999 * 109.47077 * 59.99907 * 3 2 1 36 36 H 1.08988 * 109.47409 * 299.99868 * 4 2 1 37 37 H 1.09002 * 109.46814 * 60.00614 * 4 2 1 38 38 H 1.09008 * 109.46727 * 180.02562 * 4 2 1 39 39 H 1.08003 * 119.93563 * 359.97438 * 6 5 2 40 40 H 1.07993 * 120.06157 * 180.02562 * 7 6 5 41 41 H 1.08001 * 120.00082 * 359.97438 * 10 9 8 42 42 H 1.08007 * 119.90288 * 179.97438 * 11 10 9 43 43 H 1.08003 * 119.90961 * 180.02562 * 12 11 10 44 44 H 1.08006 * 120.02339 * 0.25325 * 16 15 14 45 45 H 1.08001 * 119.97226 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.47096 * 240.02085 * 19 18 17 47 47 H 0.96703 * 114.00343 * 300.00080 * 20 19 18 48 48 H 1.07996 * 119.96959 * 179.97438 * 25 18 17 49 49 H 1.07997 * 120.02802 * 179.97438 * 26 25 18 50 50 H 1.07995 * 120.08928 * 179.72657 * 27 13 12 51 51 H 1.08000 * 120.05981 * 179.69868 * 28 8 7 52 52 H 1.07995 * 119.94014 * 180.25352 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7153 -2.2442 1.4881 7 6 3.1750 -2.9000 2.6122 8 6 3.4081 -2.1858 3.7857 9 6 3.9028 -2.8854 4.9973 10 6 4.1361 -4.2589 4.9647 11 6 4.5959 -4.9078 6.0934 12 6 4.8264 -4.1989 7.2571 13 6 4.5965 -2.8301 7.2979 14 8 4.8239 -2.1368 8.4443 15 6 5.3946 -2.7965 9.4862 16 6 4.6674 -3.0271 10.6452 17 6 5.2521 -3.6921 11.7053 18 6 6.5606 -4.1292 11.6119 19 6 7.1957 -4.8549 12.7698 20 8 7.5981 -6.1605 12.3508 21 14 5.9654 -5.0013 14.1611 22 1 4.7773 -5.7595 13.6934 23 1 6.5914 -5.7160 15.3024 24 1 5.5469 -3.6448 14.5966 25 6 7.2874 -3.9012 10.4579 26 6 6.7078 -3.2355 9.3953 27 6 4.1296 -2.1722 6.1717 28 6 3.1701 -0.8134 3.8189 29 6 2.7159 -0.1668 2.6873 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5741 1.7563 -0.0005 34 1 2.1208 2.2703 -0.8900 35 1 2.1208 2.2702 0.8900 36 1 2.1207 -1.9059 -1.5212 37 1 2.1207 -0.3644 -2.4112 38 1 3.5740 -0.8787 -1.5209 39 1 2.5339 -2.7968 0.5780 40 1 3.3543 -3.9645 2.5820 41 1 3.9566 -4.8158 4.0569 42 1 4.7759 -5.9724 6.0668 43 1 5.1865 -4.7109 8.1372 44 1 3.6453 -2.6858 10.7187 45 1 4.6865 -3.8714 12.6077 46 1 8.0680 -4.2985 13.1130 47 1 6.8712 -6.7128 12.0320 48 1 8.3094 -4.2432 10.3876 49 1 7.2761 -3.0574 8.4943 50 1 3.9460 -1.1085 6.2032 51 1 3.3445 -0.2560 4.7273 52 1 2.5350 0.8976 2.7108 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_11653318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:28 Heat of formation + Delta-G solvation = -29.125394 kcal Electronic energy + Delta-G solvation = -29979.600272 eV Core-core repulsion = 25997.544835 eV Total energy + Delta-G solvation = -3982.055437 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 378.156 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04607 -40.59771 -39.75032 -38.43284 -37.29718 -33.51717 -32.61970 -32.25844 -31.95924 -30.82290 -29.84599 -29.25016 -28.44324 -28.40944 -26.74548 -24.55994 -24.40991 -24.03808 -22.90518 -22.32499 -21.54285 -19.63620 -18.61414 -18.17626 -17.46344 -17.21121 -16.96417 -16.61241 -16.25426 -16.18364 -15.79673 -15.48680 -15.19450 -14.99073 -14.86451 -14.64947 -14.56405 -14.46721 -14.22641 -14.19303 -14.16792 -13.88315 -13.82352 -13.64478 -13.40924 -13.31176 -13.26575 -13.10873 -13.01872 -12.94078 -12.71152 -12.37360 -12.22733 -12.18521 -12.08196 -11.69223 -11.64294 -11.11493 -10.90310 -10.82677 -10.55884 -10.46639 -10.14230 -9.84622 -9.78391 -9.34367 -8.90515 -0.35021 -0.11965 0.18758 0.42773 0.57723 0.87960 1.06391 1.36135 1.43575 1.71731 1.84368 1.85189 1.96518 1.99568 2.54929 2.58719 2.68459 3.15931 3.35922 3.54934 3.61579 3.75098 3.77572 3.80726 3.93400 4.04564 4.14909 4.16901 4.22175 4.27296 4.37834 4.41595 4.47167 4.50590 4.64835 4.69698 4.70522 4.72097 4.75325 4.76098 4.76519 4.77894 4.84088 4.92424 5.01664 5.05302 5.17033 5.20908 5.26166 5.31014 5.32808 5.36841 5.43952 5.48802 5.51564 5.53972 5.59678 5.64735 5.78856 5.85219 6.13335 6.44645 6.54406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.367 4.367 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.040 4.040 9 C -0.008 4.008 10 C -0.141 4.141 11 C -0.078 4.078 12 C -0.193 4.193 13 C 0.124 3.876 14 O -0.257 6.257 15 C 0.092 3.908 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.122 4.122 19 C -0.080 4.080 20 O -0.537 6.537 21 Si 0.947 3.053 22 H -0.250 1.250 23 H -0.252 1.252 24 H -0.249 1.249 25 C -0.073 4.073 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.118 4.118 29 C -0.087 4.087 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.121 0.879 47 H 0.377 0.623 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.123 0.877 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -0.722 -1.079 1.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.105 4.105 7 C -0.135 4.135 8 C -0.040 4.040 9 C -0.008 4.008 10 C -0.159 4.159 11 C -0.096 4.096 12 C -0.212 4.212 13 C 0.081 3.919 14 O -0.169 6.169 15 C 0.050 3.950 16 C -0.134 4.134 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.191 4.191 20 O -0.342 6.342 21 Si 0.770 3.230 22 H -0.174 1.174 23 H -0.176 1.176 24 H -0.173 1.173 25 C -0.091 4.091 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.136 4.136 29 C -0.105 4.105 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.139 0.861 47 H 0.224 0.776 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.141 0.859 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.938 -0.400 -0.140 1.030 hybrid contribution -0.074 -0.263 -0.284 0.394 sum -1.013 -0.662 -0.424 1.282 Atomic orbital electron populations 1.26124 1.20476 1.04575 1.04482 0.78192 0.66875 0.66146 0.63761 1.26135 1.06475 1.18566 1.04561 1.26133 1.06467 1.08038 1.15064 1.27454 1.03673 0.99519 1.10239 1.21021 0.97233 0.94619 0.97656 1.21309 0.99810 0.99796 0.92615 1.18721 0.99429 0.93400 0.92450 1.18548 0.97371 0.93002 0.91893 1.21212 1.01976 0.93605 0.99099 1.20909 0.96793 1.00003 0.91875 1.21388 1.06552 0.93013 1.00211 1.18958 0.97061 0.90439 0.85426 1.84375 1.75749 1.37125 1.19619 1.18707 0.91530 0.97013 0.87735 1.21099 1.00455 0.98775 0.93025 1.20943 0.94615 0.98491 0.98545 1.20431 0.94313 1.00481 0.96979 1.24994 1.07774 0.85415 1.00926 1.86528 1.37990 1.23477 1.86228 0.85709 0.77693 0.81735 0.77903 1.17392 1.17568 1.17301 1.20912 1.00315 0.96302 0.91569 1.21556 0.94343 0.99213 1.00469 1.20431 1.04305 1.00700 0.90067 1.21344 0.99717 0.93674 0.98876 1.21026 0.97187 0.99709 0.92557 0.91168 0.91051 0.91171 0.91047 0.90964 0.91167 0.91175 0.90959 0.91049 0.85915 0.85885 0.85277 0.85226 0.85190 0.84523 0.85341 0.86127 0.77594 0.84559 0.84872 0.84651 0.85907 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.61 8.65 101.05 0.87 1.48 16 2 Si 1.06 -2.51 12.31 -169.99 -2.09 -4.60 16 3 C -0.45 0.74 8.52 101.05 0.86 1.60 16 4 C -0.45 0.78 8.53 101.05 0.86 1.65 16 5 C -0.37 -0.02 4.60 -39.52 -0.18 -0.20 16 6 C -0.09 -0.04 9.28 -39.63 -0.37 -0.41 16 7 C -0.12 -0.15 9.43 -39.25 -0.37 -0.52 16 8 C -0.04 -0.09 5.88 -104.90 -0.62 -0.70 16 9 C -0.01 -0.02 5.87 -104.92 -0.62 -0.63 16 10 C -0.14 -0.18 9.43 -39.23 -0.37 -0.55 16 11 C -0.08 -0.07 10.03 -39.66 -0.40 -0.47 16 12 C -0.19 -0.33 8.79 -39.37 -0.35 -0.68 16 13 C 0.12 0.34 6.53 -39.25 -0.26 0.08 16 14 O -0.26 -0.81 10.00 -3.53 -0.04 -0.85 16 15 C 0.09 0.17 4.72 -39.20 -0.18 -0.01 16 16 C -0.12 -0.10 9.99 -39.43 -0.39 -0.49 16 17 C -0.11 0.01 8.66 -39.61 -0.34 -0.33 16 18 C -0.12 0.03 5.39 -104.60 -0.56 -0.53 16 19 C -0.08 0.09 2.82 36.00 0.10 0.19 16 20 O -0.54 0.26 12.77 -35.23 -0.45 -0.19 16 21 Si 0.95 -1.11 25.07 -169.99 -4.26 -5.37 16 22 H -0.25 0.25 7.11 56.52 0.40 0.65 16 23 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 24 H -0.25 0.14 7.11 56.52 0.40 0.54 16 25 C -0.07 0.00 9.60 -39.60 -0.38 -0.38 16 26 C -0.14 -0.12 8.35 -39.42 -0.33 -0.45 16 27 C -0.14 -0.34 9.37 -39.09 -0.37 -0.71 16 28 C -0.12 -0.19 9.43 -39.25 -0.37 -0.56 16 29 C -0.09 -0.06 9.28 -39.63 -0.37 -0.43 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.13 7.67 -51.93 -0.40 -0.52 16 36 H 0.07 -0.14 7.67 -51.94 -0.40 -0.53 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.10 7.96 -51.92 -0.41 -0.52 16 39 H 0.12 -0.19 7.40 -52.48 -0.39 -0.58 16 40 H 0.12 -0.06 6.20 -52.49 -0.33 -0.38 16 41 H 0.13 -0.07 6.20 -52.49 -0.33 -0.40 16 42 H 0.13 -0.16 8.06 -52.48 -0.42 -0.58 16 43 H 0.13 0.13 6.18 -52.48 -0.32 -0.19 16 44 H 0.14 -0.04 8.06 -52.48 -0.42 -0.46 16 45 H 0.13 -0.19 4.87 -52.49 -0.26 -0.45 16 46 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 48 H 0.14 -0.13 8.06 -52.49 -0.42 -0.55 16 49 H 0.13 0.05 8.06 -52.49 -0.42 -0.38 16 50 H 0.14 0.20 6.21 -52.49 -0.33 -0.13 16 51 H 0.12 0.04 6.21 -52.49 -0.33 -0.28 16 52 H 0.12 -0.16 7.40 -52.49 -0.39 -0.55 16 LS Contribution 425.23 15.07 6.41 6.41 Total: 0.00 -5.97 425.23 -11.41 -17.37 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -6.85 Total: -9.73 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.12 Total: -3.05 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.49 Total: -1.04 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: -6.35 Total: -9.97 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -5.97 -11.41 -17.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.753 kcal (2) G-P(sol) polarization free energy of solvation -5.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds