Wall clock time and date at job start Mon Mar 8 2021 08:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86294 * 109.47545 * 2 1 4 4 C 1.86309 * 109.46902 * 239.99820 * 2 1 3 5 5 C 1.86798 * 109.47290 * 120.00543 * 2 1 3 6 6 C 1.38318 * 119.88351 * 89.99500 * 5 2 1 7 7 C 1.38022 * 120.12422 * 180.02562 * 6 5 2 8 8 C 1.39340 * 119.87351 * 359.97438 * 7 6 5 9 9 C 1.48393 * 120.11627 * 180.02562 * 8 7 6 10 10 C 1.39352 * 120.09346 * 0.02562 * 9 8 7 11 11 C 1.38075 * 119.98934 * 180.02562 * 10 9 8 12 12 C 1.38194 * 120.18746 * 359.97353 * 11 10 9 13 13 C 1.38852 * 120.18635 * 0.02562 * 12 11 10 14 14 O 1.35891 * 120.00213 * 179.97438 * 13 12 11 15 15 C 1.35882 * 117.99556 * 6.11523 * 14 13 12 16 16 C 1.38755 * 120.06405 * 247.13050 * 15 14 13 17 17 C 1.38132 * 119.94760 * 180.32296 * 16 15 14 18 18 C 1.38272 * 120.05811 * 359.93758 * 17 16 15 19 19 C 1.50698 * 119.94436 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47313 * 120.01477 * 19 18 17 21 21 Si 1.86305 * 109.46914 * 0.02562 * 19 18 17 22 22 H 1.48498 * 109.47040 * 60.00489 * 21 19 18 23 23 H 1.48504 * 109.47132 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47343 * 300.00375 * 21 19 18 25 25 C 1.38272 * 120.11554 * 0.03624 * 18 17 16 26 26 C 1.38143 * 120.05705 * 0.02562 * 25 18 17 27 27 C 1.38532 * 120.00196 * 0.25876 * 13 12 11 28 28 C 1.39329 * 119.76128 * 0.27719 * 8 7 6 29 29 C 1.38022 * 119.87697 * 359.45144 * 28 8 7 30 30 H 1.08999 * 109.47008 * 300.00134 * 1 2 3 31 31 H 1.09002 * 109.46884 * 59.99523 * 1 2 3 32 32 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47222 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47419 * 300.00150 * 3 2 1 35 35 H 1.08999 * 109.47077 * 59.99907 * 3 2 1 36 36 H 1.08988 * 109.47409 * 299.99868 * 4 2 1 37 37 H 1.09002 * 109.46814 * 60.00614 * 4 2 1 38 38 H 1.09008 * 109.46727 * 180.02562 * 4 2 1 39 39 H 1.08003 * 119.93563 * 359.97438 * 6 5 2 40 40 H 1.07993 * 120.06157 * 180.02562 * 7 6 5 41 41 H 1.08001 * 120.00082 * 359.97438 * 10 9 8 42 42 H 1.08007 * 119.90288 * 179.97438 * 11 10 9 43 43 H 1.08003 * 119.90961 * 180.02562 * 12 11 10 44 44 H 1.08006 * 120.02339 * 0.25325 * 16 15 14 45 45 H 1.08001 * 119.97226 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.47096 * 240.02085 * 19 18 17 47 47 H 0.96703 * 114.00343 * 300.00080 * 20 19 18 48 48 H 1.07996 * 119.96959 * 179.97438 * 25 18 17 49 49 H 1.07997 * 120.02802 * 179.97438 * 26 25 18 50 50 H 1.07995 * 120.08928 * 179.72657 * 27 13 12 51 51 H 1.08000 * 120.05981 * 179.69868 * 28 8 7 52 52 H 1.07995 * 119.94014 * 180.25352 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5251 6 6 2.7153 -2.2442 1.4881 7 6 3.1750 -2.9000 2.6122 8 6 3.4081 -2.1858 3.7857 9 6 3.9028 -2.8854 4.9973 10 6 4.1361 -4.2589 4.9647 11 6 4.5959 -4.9078 6.0934 12 6 4.8264 -4.1989 7.2571 13 6 4.5965 -2.8301 7.2979 14 8 4.8239 -2.1368 8.4443 15 6 5.3946 -2.7965 9.4862 16 6 4.6674 -3.0271 10.6452 17 6 5.2521 -3.6921 11.7053 18 6 6.5606 -4.1292 11.6119 19 6 7.1957 -4.8549 12.7698 20 8 7.5981 -6.1605 12.3508 21 14 5.9654 -5.0013 14.1611 22 1 4.7773 -5.7595 13.6934 23 1 6.5914 -5.7160 15.3024 24 1 5.5469 -3.6448 14.5966 25 6 7.2874 -3.9012 10.4579 26 6 6.7078 -3.2355 9.3953 27 6 4.1296 -2.1722 6.1717 28 6 3.1701 -0.8134 3.8189 29 6 2.7159 -0.1668 2.6873 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5741 1.7563 -0.0005 34 1 2.1208 2.2703 -0.8900 35 1 2.1208 2.2702 0.8900 36 1 2.1207 -1.9059 -1.5212 37 1 2.1207 -0.3644 -2.4112 38 1 3.5740 -0.8787 -1.5209 39 1 2.5339 -2.7968 0.5780 40 1 3.3543 -3.9645 2.5820 41 1 3.9566 -4.8158 4.0569 42 1 4.7759 -5.9724 6.0668 43 1 5.1865 -4.7109 8.1372 44 1 3.6453 -2.6858 10.7187 45 1 4.6865 -3.8714 12.6077 46 1 8.0680 -4.2985 13.1130 47 1 6.8712 -6.7128 12.0320 48 1 8.3094 -4.2432 10.3876 49 1 7.2761 -3.0574 8.4943 50 1 3.9460 -1.1085 6.2032 51 1 3.3445 -0.2560 4.7273 52 1 2.5350 0.8976 2.7108 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11653318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:27 Heat of formation + Delta-G solvation = -16.803777 kcal Electronic energy + Delta-G solvation = -29979.065967 eV Core-core repulsion = 25997.544835 eV Total energy + Delta-G solvation = -3981.521132 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 378.156 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.13415 -40.63250 -39.77108 -38.47688 -37.26644 -33.56914 -32.65812 -32.27326 -31.97249 -30.88143 -29.81569 -29.18779 -28.28579 -28.26280 -26.73225 -24.61757 -24.45386 -24.05699 -22.92800 -22.37424 -21.58477 -19.70543 -18.59125 -18.20694 -17.50345 -17.27954 -17.01095 -16.60582 -16.26470 -16.12290 -15.81123 -15.50642 -15.17132 -15.02170 -14.91833 -14.67223 -14.58946 -14.47280 -14.21290 -14.15489 -14.04383 -13.80988 -13.71339 -13.62677 -13.40518 -13.19580 -13.11487 -12.99398 -12.96144 -12.95693 -12.74247 -12.32436 -12.24526 -12.16877 -12.07744 -11.70576 -11.62737 -11.03952 -10.77717 -10.74751 -10.49167 -10.47590 -10.15990 -9.89179 -9.82380 -9.43931 -8.97727 -0.42427 -0.15869 0.16965 0.32297 0.53742 0.82300 1.15556 1.44853 1.50460 1.85027 1.90623 1.93360 2.03694 2.10731 2.55011 2.62142 2.67722 3.10094 3.49305 3.55463 3.59466 3.70887 3.75377 3.81872 3.90572 4.01186 4.09984 4.15881 4.19448 4.25360 4.33427 4.38861 4.49204 4.55798 4.66325 4.72481 4.84199 4.85034 4.85417 4.86329 4.89093 4.90048 4.91188 4.92173 4.98845 5.03568 5.12008 5.17389 5.21629 5.25493 5.31177 5.32284 5.43712 5.56380 5.59438 5.60450 5.68368 5.70323 5.73535 5.79293 6.12735 6.43970 6.68187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.460 4.460 5 C -0.379 4.379 6 C -0.098 4.098 7 C -0.129 4.129 8 C -0.059 4.059 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.078 4.078 12 C -0.198 4.198 13 C 0.110 3.890 14 O -0.271 6.271 15 C 0.074 3.926 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.077 4.077 20 O -0.550 6.550 21 Si 0.977 3.023 22 H -0.250 1.250 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.074 4.074 26 C -0.141 4.141 27 C -0.152 4.152 28 C -0.136 4.136 29 C -0.099 4.099 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.129 0.871 47 H 0.390 0.610 48 H 0.147 0.853 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.125 0.875 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -1.406 -1.724 2.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.568 4.568 5 C -0.418 4.418 6 C -0.115 4.115 7 C -0.146 4.146 8 C -0.059 4.059 9 C -0.016 4.016 10 C -0.164 4.164 11 C -0.096 4.096 12 C -0.216 4.216 13 C 0.068 3.932 14 O -0.184 6.184 15 C 0.032 3.968 16 C -0.141 4.141 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.187 4.187 20 O -0.357 6.357 21 Si 0.801 3.199 22 H -0.174 1.174 23 H -0.200 1.200 24 H -0.181 1.181 25 C -0.092 4.092 26 C -0.159 4.159 27 C -0.171 4.171 28 C -0.153 4.153 29 C -0.117 4.117 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.171 0.829 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.239 0.761 48 H 0.165 0.835 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.143 0.857 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.013 -1.092 -0.780 1.681 hybrid contribution -0.058 -0.055 -0.073 0.108 sum -1.071 -1.147 -0.853 1.786 Atomic orbital electron populations 1.26290 1.21645 1.04481 1.04511 0.77185 0.65172 0.64609 0.61739 1.26291 1.06398 1.19514 1.04820 1.26253 1.06419 1.08527 1.15574 1.28074 1.02848 0.99752 1.11115 1.21371 0.96893 0.95068 0.98213 1.21572 0.99828 1.00634 0.92606 1.18886 1.00327 0.93803 0.92875 1.18717 0.97440 0.93625 0.91866 1.21474 1.01632 0.93358 0.99967 1.21208 0.95952 1.01121 0.91310 1.21502 1.06622 0.92685 1.00804 1.19128 0.97592 0.91025 0.85448 1.84348 1.76082 1.37885 1.20066 1.18913 0.92106 0.97953 0.87793 1.21247 1.00870 0.98969 0.93005 1.21111 0.94845 0.98090 0.98707 1.20571 0.94204 1.00044 0.97116 1.25011 1.08098 0.85292 1.00326 1.86499 1.39147 1.23778 1.86306 0.85289 0.77176 0.80733 0.76685 1.17370 1.19972 1.18082 1.21044 1.00782 0.95976 0.91366 1.21596 0.94079 0.99397 1.00849 1.20551 1.05053 1.00969 0.90481 1.21550 1.00290 0.93924 0.99572 1.21324 0.97112 1.00688 0.92549 0.91545 0.90641 0.91342 0.91337 0.90627 0.91039 0.90760 0.90633 0.91268 0.83888 0.84554 0.83560 0.82910 0.84713 0.83954 0.84026 0.85324 0.76110 0.83545 0.84883 0.84668 0.85687 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.48 8.65 113.37 0.98 2.46 16 2 Si 1.13 -6.02 12.31 68.60 0.84 -5.18 16 3 C -0.46 1.73 8.52 113.37 0.97 2.69 16 4 C -0.46 2.04 8.53 113.37 0.97 3.00 16 5 C -0.38 -0.03 4.60 22.31 0.10 0.08 16 6 C -0.10 -0.07 9.28 22.24 0.21 0.13 16 7 C -0.13 -0.37 9.43 22.48 0.21 -0.16 16 8 C -0.06 -0.33 5.88 -20.04 -0.12 -0.45 16 9 C -0.02 -0.10 5.87 -20.06 -0.12 -0.21 16 10 C -0.15 -0.43 9.43 22.50 0.21 -0.21 16 11 C -0.08 -0.15 10.03 22.22 0.22 0.08 16 12 C -0.20 -0.86 8.79 22.41 0.20 -0.66 16 13 C 0.11 0.80 6.53 22.49 0.15 0.95 16 14 O -0.27 -2.25 10.00 -35.56 -0.36 -2.61 16 15 C 0.07 0.37 4.72 22.52 0.11 0.48 16 16 C -0.12 -0.29 9.99 22.37 0.22 -0.07 16 17 C -0.11 0.03 8.66 22.25 0.19 0.22 16 18 C -0.12 0.10 5.39 -19.85 -0.11 -0.01 16 19 C -0.08 0.22 2.82 71.24 0.20 0.42 16 20 O -0.55 0.93 12.77 -148.98 -1.90 -0.97 16 21 Si 0.98 -2.60 25.07 68.60 1.72 -0.88 16 22 H -0.25 0.69 7.11 99.48 0.71 1.40 16 23 H -0.27 -0.31 7.11 99.48 0.71 0.39 16 24 H -0.26 0.38 7.11 99.48 0.71 1.08 16 25 C -0.07 -0.01 9.60 22.26 0.21 0.21 16 26 C -0.14 -0.36 8.35 22.37 0.19 -0.18 16 27 C -0.15 -1.08 9.37 22.59 0.21 -0.87 16 28 C -0.14 -0.64 9.43 22.48 0.21 -0.43 16 29 C -0.10 -0.20 9.28 22.24 0.21 0.01 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.07 -0.28 7.67 -2.39 -0.02 -0.30 16 36 H 0.07 -0.38 7.67 -2.39 -0.02 -0.39 16 37 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 39 H 0.14 -0.59 7.40 -2.91 -0.02 -0.61 16 40 H 0.14 -0.14 6.20 -2.91 -0.02 -0.16 16 41 H 0.15 -0.21 6.20 -2.91 -0.02 -0.23 16 42 H 0.15 -0.52 8.06 -2.91 -0.02 -0.55 16 43 H 0.14 0.37 6.18 -2.91 -0.02 0.35 16 44 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.14 -0.49 4.87 -2.91 -0.01 -0.50 16 46 H 0.13 -0.59 7.96 -2.38 -0.02 -0.61 16 47 H 0.39 -3.11 8.70 -74.06 -0.64 -3.76 16 48 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 49 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 50 H 0.14 0.77 6.21 -2.91 -0.02 0.75 16 51 H 0.13 0.37 6.21 -2.91 -0.02 0.35 16 52 H 0.14 -0.30 7.40 -2.91 -0.02 -0.33 16 Total: 0.00 -14.21 425.23 6.98 -7.23 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: 1.05 Total: -5.06 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.62 Total: 7.46 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -2.26 Total: -3.58 kcal Atomic # 14 Polarization: -8.63 SS G_CDS: 2.56 Total: -6.06 kcal Total: -14.21 6.98 -7.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11653318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.571 kcal (2) G-P(sol) polarization free energy of solvation -14.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds