Wall clock time and date at job start Mon Mar 8 2021 08:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86307 * 109.47029 * 2 1 4 4 C 1.86295 * 109.47276 * 240.00037 * 2 1 3 5 5 C 1.86793 * 109.47259 * 119.99930 * 2 1 3 6 6 C 1.38326 * 119.87725 * 89.99939 * 5 2 1 7 7 C 1.38014 * 120.12720 * 179.97438 * 6 5 2 8 8 C 1.39365 * 119.87178 * 0.02562 * 7 6 5 9 9 C 1.48336 * 120.11880 * 179.97438 * 8 7 6 10 10 C 1.39482 * 120.27055 * 310.30081 * 9 8 7 11 11 C 1.38009 * 120.06862 * 180.24631 * 10 9 8 12 12 C 1.50706 * 119.81070 * 179.71005 * 11 10 9 13 13 O 1.42895 * 109.46938 * 299.72328 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 179.72493 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38429 * 120.36886 * 359.43082 * 11 10 9 19 19 C 1.38531 * 119.97540 * 0.30003 * 18 11 10 20 20 C 1.38592 * 120.13017 * 359.97438 * 19 18 11 21 21 O 1.36394 * 119.66517 * 179.91195 * 20 19 18 22 22 C 1.42916 * 115.92118 * 68.36438 * 21 20 19 23 23 C 1.52070 * 110.75250 * 275.59811 * 22 21 20 24 24 C 1.52062 * 112.36063 * 64.76342 * 23 22 21 25 25 O 1.36485 * 120.28507 * 179.97438 * 19 18 11 26 26 C 1.39356 * 119.75364 * 0.24938 * 8 7 6 27 27 C 1.38015 * 119.87800 * 359.49606 * 26 8 7 28 28 H 1.08992 * 109.47131 * 299.99642 * 1 2 3 29 29 H 1.08998 * 109.46821 * 60.00274 * 1 2 3 30 30 H 1.09000 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46754 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47280 * 300.00080 * 3 2 1 33 33 H 1.09001 * 109.46883 * 59.99998 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00319 * 4 2 1 35 35 H 1.09007 * 109.47492 * 59.99792 * 4 2 1 36 36 H 1.08999 * 109.47394 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.93425 * 359.95981 * 6 5 2 38 38 H 1.07998 * 120.06014 * 180.02562 * 7 6 5 39 39 H 1.07999 * 119.96427 * 359.97438 * 10 9 8 40 40 H 1.09000 * 109.47161 * 59.72594 * 12 11 10 41 41 H 0.96698 * 114.00355 * 299.99977 * 13 12 11 42 42 H 1.08003 * 120.00881 * 180.27328 * 18 11 10 43 43 H 1.09006 * 109.21898 * 35.92856 * 22 21 20 44 44 H 1.09000 * 109.21713 * 155.30803 * 22 21 20 45 45 H 1.08999 * 108.89875 * 185.50162 * 23 22 21 46 46 H 1.08994 * 108.90284 * 304.11069 * 23 22 21 47 47 H 1.09001 * 109.22014 * 55.54046 * 24 23 22 48 48 H 1.09001 * 109.21507 * 174.87150 * 24 23 22 49 49 H 1.08002 * 120.06131 * 179.75107 * 26 8 7 50 50 H 1.07994 * 119.93862 * 180.27135 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7154 -2.2441 1.4881 7 6 3.1760 -2.8998 2.6118 8 6 3.4091 -2.1855 3.7855 9 6 3.9036 -2.8848 4.9967 10 6 3.2718 -4.0442 5.4464 11 6 3.7322 -4.6886 6.5766 12 6 3.0411 -5.9372 7.0610 13 8 1.6779 -5.6384 7.3681 14 14 3.8984 -6.5678 8.5902 15 1 3.8459 -5.5297 9.6508 16 1 3.2171 -7.7978 9.0680 17 1 5.3151 -6.8783 8.2711 18 6 4.8287 -4.1978 7.2643 19 6 5.4662 -3.0501 6.8221 20 6 5.0086 -2.3919 5.6915 21 8 5.6423 -1.2617 5.2655 22 6 6.9635 -1.4423 4.7515 23 6 7.9834 -1.4553 5.8794 24 6 7.7993 -2.6421 6.8121 25 8 6.5475 -2.5604 7.4956 26 6 3.1705 -0.8129 3.8188 27 6 2.7150 -0.1667 2.6876 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2704 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5740 -0.8778 -1.5213 37 1 2.5337 -2.7967 0.5781 38 1 3.3553 -3.9643 2.5815 39 1 2.4187 -4.4355 4.9121 40 1 3.0796 -6.6991 6.2825 41 1 1.5676 -4.9665 8.0548 42 1 5.1868 -4.7092 8.1456 43 1 7.0126 -2.3884 4.2123 44 1 7.1967 -0.6267 4.0669 45 1 8.9844 -1.4957 5.4498 46 1 7.8839 -0.5358 6.4561 47 1 7.8309 -3.5636 6.2308 48 1 8.6075 -2.6523 7.5435 49 1 3.3457 -0.2552 4.7270 50 1 2.5339 0.8977 2.7111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_11771128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:44 Heat of formation + Delta-G solvation = -102.040252 kcal Electronic energy + Delta-G solvation = -30110.340339 eV Core-core repulsion = 26191.119305 eV Total energy + Delta-G solvation = -3919.221033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06627 -39.97488 -39.29185 -38.39538 -37.24001 -33.98819 -33.57177 -31.81213 -30.72945 -30.06760 -29.37234 -28.43100 -28.38842 -27.80060 -26.26873 -24.60394 -23.38748 -22.89038 -22.32795 -21.54207 -19.47547 -18.64363 -18.19752 -17.63951 -17.18030 -16.63952 -16.41945 -16.29355 -16.03359 -15.84531 -15.75410 -15.40772 -15.08788 -14.88162 -14.54382 -14.29510 -14.25695 -14.16053 -14.07803 -13.92566 -13.81643 -13.52081 -13.36223 -13.25597 -13.23935 -13.08334 -12.85839 -12.76501 -12.64444 -12.26998 -12.13653 -11.94942 -11.89884 -11.71264 -11.42789 -11.07667 -10.97715 -10.88516 -10.75413 -10.49630 -10.16356 -9.70294 -9.49461 -9.15668 -0.25654 0.00003 0.57893 0.65383 1.09688 1.40864 1.47654 1.75146 1.87533 1.87744 1.97251 2.17793 2.41650 2.57531 2.74470 3.05738 3.36543 3.50505 3.58973 3.67184 3.71017 4.00964 4.06352 4.10012 4.13787 4.20051 4.23546 4.26007 4.29304 4.41017 4.54297 4.58908 4.67479 4.70757 4.71763 4.73694 4.74460 4.76810 4.78436 4.79292 4.80046 4.95699 4.96132 5.03933 5.17528 5.24329 5.31440 5.39497 5.45372 5.52533 5.56085 5.61559 5.70501 5.74147 6.08808 6.20410 6.49483 6.53088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.366 4.366 6 C -0.091 4.091 7 C -0.116 4.116 8 C -0.039 4.039 9 C -0.043 4.043 10 C -0.070 4.070 11 C -0.111 4.111 12 C -0.077 4.077 13 O -0.536 6.536 14 Si 0.945 3.055 15 H -0.248 1.248 16 H -0.251 1.251 17 H -0.250 1.250 18 C -0.123 4.123 19 C 0.074 3.926 20 C 0.084 3.916 21 O -0.310 6.310 22 C 0.061 3.939 23 C -0.188 4.188 24 C 0.059 3.941 25 O -0.317 6.317 26 C -0.096 4.096 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.378 0.622 42 H 0.133 0.867 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.122 0.878 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -0.514 -2.306 3.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.407 4.407 6 C -0.109 4.109 7 C -0.134 4.134 8 C -0.039 4.039 9 C -0.044 4.044 10 C -0.088 4.088 11 C -0.112 4.112 12 C -0.188 4.188 13 O -0.341 6.341 14 Si 0.767 3.233 15 H -0.172 1.172 16 H -0.175 1.175 17 H -0.174 1.174 18 C -0.141 4.141 19 C 0.030 3.970 20 C 0.039 3.961 21 O -0.226 6.226 22 C -0.014 4.014 23 C -0.226 4.226 24 C -0.016 4.016 25 O -0.234 6.234 26 C -0.114 4.114 27 C -0.108 4.108 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.226 0.774 42 H 0.151 0.849 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.125 0.875 49 H 0.140 0.860 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.381 -1.029 -1.785 3.149 hybrid contribution 0.361 0.384 0.069 0.532 sum 2.743 -0.645 -1.716 3.299 Atomic orbital electron populations 1.26121 1.20479 1.04577 1.04461 0.78198 0.66906 0.66132 0.63803 1.26135 1.06419 1.18614 1.04536 1.26133 1.06402 1.08050 1.15083 1.27411 1.03710 0.99475 1.10147 1.20971 0.97668 0.94619 0.97611 1.21250 1.00050 0.99496 0.92606 1.18541 0.99810 0.93490 0.92021 1.18859 0.96203 0.94642 0.94664 1.21042 0.99154 0.93277 0.95370 1.20136 0.96316 0.98364 0.96349 1.24946 0.87366 0.96959 1.09483 1.86520 1.22684 1.63140 1.61781 0.85744 0.79418 0.81059 0.77033 1.17197 1.17494 1.17391 1.21014 0.97438 0.94578 1.01097 1.18902 0.91458 0.93642 0.93004 1.19128 0.94889 0.88836 0.93223 1.86381 1.28907 1.27034 1.80320 1.22645 0.80734 1.03033 0.94963 1.22482 1.00568 1.01102 0.98409 1.22679 0.84766 0.97536 0.96620 1.86390 1.14313 1.80696 1.41984 1.21290 0.98035 0.93225 0.98803 1.21016 0.97595 0.99634 0.92580 0.91152 0.91099 0.91163 0.91103 0.91011 0.91158 0.91177 0.91002 0.91112 0.86055 0.86258 0.84235 0.86056 0.77436 0.84935 0.92466 0.87665 0.88934 0.89593 0.92336 0.87524 0.85993 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.50 8.65 101.05 0.87 1.38 16 2 Si 1.06 -2.28 12.31 -169.99 -2.09 -4.37 16 3 C -0.45 0.64 8.53 101.05 0.86 1.51 16 4 C -0.45 0.72 8.52 101.05 0.86 1.59 16 5 C -0.37 -0.11 4.60 -39.52 -0.18 -0.29 16 6 C -0.09 -0.06 9.28 -39.63 -0.37 -0.43 16 7 C -0.12 -0.17 9.51 -39.24 -0.37 -0.55 16 8 C -0.04 -0.10 5.28 -104.91 -0.55 -0.65 16 9 C -0.04 -0.11 5.48 -104.80 -0.57 -0.69 16 10 C -0.07 -0.10 9.07 -39.20 -0.36 -0.45 16 11 C -0.11 -0.09 5.39 -104.63 -0.56 -0.66 16 12 C -0.08 0.04 2.81 36.01 0.10 0.14 16 13 O -0.54 -0.11 12.77 -35.23 -0.45 -0.56 16 14 Si 0.94 -0.41 25.05 -169.99 -4.26 -4.67 16 15 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 16 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 17 H -0.25 0.00 7.11 56.52 0.40 0.40 16 18 C -0.12 -0.22 8.61 -39.40 -0.34 -0.56 16 19 C 0.07 0.23 5.73 -39.34 -0.23 0.01 16 20 C 0.08 0.27 5.64 -38.97 -0.22 0.05 16 21 O -0.31 -0.99 8.56 -36.53 -0.31 -1.31 16 22 C 0.06 0.02 6.51 36.68 0.24 0.26 16 23 C -0.19 0.15 5.93 -27.68 -0.16 -0.01 16 24 C 0.06 0.00 6.51 36.68 0.24 0.24 16 25 O -0.32 -1.04 10.16 -36.82 -0.37 -1.41 16 26 C -0.10 -0.25 8.80 -39.25 -0.35 -0.59 16 27 C -0.09 -0.11 9.28 -39.63 -0.37 -0.48 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.12 -0.16 7.40 -52.48 -0.39 -0.55 16 38 H 0.12 0.01 8.04 -52.49 -0.42 -0.41 16 39 H 0.14 0.08 8.04 -52.49 -0.42 -0.34 16 40 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 41 H 0.38 -1.01 8.70 45.56 0.40 -0.62 16 42 H 0.13 0.10 4.86 -52.48 -0.26 -0.16 16 43 H 0.06 0.00 7.93 -51.93 -0.41 -0.42 16 44 H 0.11 -0.12 8.14 -51.93 -0.42 -0.54 16 45 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 46 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 47 H 0.06 -0.04 7.93 -51.93 -0.41 -0.46 16 48 H 0.11 -0.19 8.14 -51.93 -0.42 -0.62 16 49 H 0.12 0.35 7.71 -52.49 -0.40 -0.06 16 50 H 0.12 -0.07 7.40 -52.49 -0.39 -0.46 16 LS Contribution 403.92 15.07 6.09 6.09 Total: 0.00 -6.20 403.92 -10.16 -16.36 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -7.30 Total: -9.94 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.46 Total: -0.18 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -1.14 Total: -3.28 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: -6.35 Total: -9.04 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -6.20 -10.16 -16.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11771128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.680 kcal (2) G-P(sol) polarization free energy of solvation -6.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds