Wall clock time and date at job start Mon Mar 8 2021 08:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86307 * 109.47029 * 2 1 4 4 C 1.86295 * 109.47276 * 240.00037 * 2 1 3 5 5 C 1.86793 * 109.47259 * 119.99930 * 2 1 3 6 6 C 1.38326 * 119.87725 * 89.99939 * 5 2 1 7 7 C 1.38014 * 120.12720 * 179.97438 * 6 5 2 8 8 C 1.39365 * 119.87178 * 0.02562 * 7 6 5 9 9 C 1.48336 * 120.11880 * 179.97438 * 8 7 6 10 10 C 1.39482 * 120.27055 * 310.30081 * 9 8 7 11 11 C 1.38009 * 120.06862 * 180.24631 * 10 9 8 12 12 C 1.50706 * 119.81070 * 179.71005 * 11 10 9 13 13 O 1.42895 * 109.46938 * 299.72328 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 179.72493 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38429 * 120.36886 * 359.43082 * 11 10 9 19 19 C 1.38531 * 119.97540 * 0.30003 * 18 11 10 20 20 C 1.38592 * 120.13017 * 359.97438 * 19 18 11 21 21 O 1.36394 * 119.66517 * 179.91195 * 20 19 18 22 22 C 1.42916 * 115.92118 * 68.36438 * 21 20 19 23 23 C 1.52070 * 110.75250 * 275.59811 * 22 21 20 24 24 C 1.52062 * 112.36063 * 64.76342 * 23 22 21 25 25 O 1.36485 * 120.28507 * 179.97438 * 19 18 11 26 26 C 1.39356 * 119.75364 * 0.24938 * 8 7 6 27 27 C 1.38015 * 119.87800 * 359.49606 * 26 8 7 28 28 H 1.08992 * 109.47131 * 299.99642 * 1 2 3 29 29 H 1.08998 * 109.46821 * 60.00274 * 1 2 3 30 30 H 1.09000 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46754 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47280 * 300.00080 * 3 2 1 33 33 H 1.09001 * 109.46883 * 59.99998 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00319 * 4 2 1 35 35 H 1.09007 * 109.47492 * 59.99792 * 4 2 1 36 36 H 1.08999 * 109.47394 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.93425 * 359.95981 * 6 5 2 38 38 H 1.07998 * 120.06014 * 180.02562 * 7 6 5 39 39 H 1.07999 * 119.96427 * 359.97438 * 10 9 8 40 40 H 1.09000 * 109.47161 * 59.72594 * 12 11 10 41 41 H 0.96698 * 114.00355 * 299.99977 * 13 12 11 42 42 H 1.08003 * 120.00881 * 180.27328 * 18 11 10 43 43 H 1.09006 * 109.21898 * 35.92856 * 22 21 20 44 44 H 1.09000 * 109.21713 * 155.30803 * 22 21 20 45 45 H 1.08999 * 108.89875 * 185.50162 * 23 22 21 46 46 H 1.08994 * 108.90284 * 304.11069 * 23 22 21 47 47 H 1.09001 * 109.22014 * 55.54046 * 24 23 22 48 48 H 1.09001 * 109.21507 * 174.87150 * 24 23 22 49 49 H 1.08002 * 120.06131 * 179.75107 * 26 8 7 50 50 H 1.07994 * 119.93862 * 180.27135 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7154 -2.2441 1.4881 7 6 3.1760 -2.8998 2.6118 8 6 3.4091 -2.1855 3.7855 9 6 3.9036 -2.8848 4.9967 10 6 3.2718 -4.0442 5.4464 11 6 3.7322 -4.6886 6.5766 12 6 3.0411 -5.9372 7.0610 13 8 1.6779 -5.6384 7.3681 14 14 3.8984 -6.5678 8.5902 15 1 3.8459 -5.5297 9.6508 16 1 3.2171 -7.7978 9.0680 17 1 5.3151 -6.8783 8.2711 18 6 4.8287 -4.1978 7.2643 19 6 5.4662 -3.0501 6.8221 20 6 5.0086 -2.3919 5.6915 21 8 5.6423 -1.2617 5.2655 22 6 6.9635 -1.4423 4.7515 23 6 7.9834 -1.4553 5.8794 24 6 7.7993 -2.6421 6.8121 25 8 6.5475 -2.5604 7.4956 26 6 3.1705 -0.8129 3.8188 27 6 2.7150 -0.1667 2.6876 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2704 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5740 -0.8778 -1.5213 37 1 2.5337 -2.7967 0.5781 38 1 3.3553 -3.9643 2.5815 39 1 2.4187 -4.4355 4.9121 40 1 3.0796 -6.6991 6.2825 41 1 1.5676 -4.9665 8.0548 42 1 5.1868 -4.7092 8.1456 43 1 7.0126 -2.3884 4.2123 44 1 7.1967 -0.6267 4.0669 45 1 8.9844 -1.4957 5.4498 46 1 7.8839 -0.5358 6.4561 47 1 7.8309 -3.5636 6.2308 48 1 8.6075 -2.6523 7.5435 49 1 3.3457 -0.2552 4.7270 50 1 2.5339 0.8977 2.7111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_11771128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:43 Heat of formation + Delta-G solvation = -92.653527 kcal Electronic energy + Delta-G solvation = -30109.933300 eV Core-core repulsion = 26191.119305 eV Total energy + Delta-G solvation = -3918.813994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16640 -40.04307 -39.34562 -38.51034 -37.25921 -33.99920 -33.64630 -31.87178 -30.81725 -30.10626 -29.27654 -28.28763 -28.25577 -27.82702 -26.29844 -24.69074 -23.45573 -22.91598 -22.39530 -21.61299 -19.55977 -18.69974 -18.28787 -17.67306 -17.23175 -16.70689 -16.48629 -16.31154 -16.07547 -15.88169 -15.81240 -15.44241 -15.15896 -14.91797 -14.54337 -14.32323 -14.24766 -14.04164 -14.02584 -13.90437 -13.71941 -13.53006 -13.35808 -13.15254 -13.09987 -12.95470 -12.88697 -12.77941 -12.65049 -12.29306 -12.15609 -11.97122 -11.92461 -11.73813 -11.46454 -11.09787 -10.93158 -10.75123 -10.74141 -10.49758 -10.23257 -9.78881 -9.60702 -9.24366 -0.36156 -0.11074 0.50540 0.56837 1.12326 1.42455 1.48565 1.86362 1.87458 2.04447 2.05585 2.15293 2.35285 2.64585 2.68641 2.98804 3.35999 3.46781 3.62508 3.67219 3.72957 3.93316 4.03843 4.05474 4.11063 4.14774 4.20403 4.26306 4.29866 4.41454 4.55286 4.60602 4.68155 4.72409 4.75417 4.85658 4.85719 4.86467 4.89358 4.90368 4.91840 4.92341 4.96849 5.00267 5.07898 5.16246 5.22899 5.33065 5.52444 5.59963 5.60925 5.65267 5.69008 5.72522 6.01572 6.15165 6.41512 6.64469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.125 2.875 3 C -0.463 4.463 4 C -0.459 4.459 5 C -0.376 4.376 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.052 4.052 9 C -0.051 4.051 10 C -0.072 4.072 11 C -0.104 4.104 12 C -0.072 4.072 13 O -0.548 6.548 14 Si 0.974 3.026 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.255 1.255 18 C -0.130 4.130 19 C 0.060 3.940 20 C 0.071 3.929 21 O -0.329 6.329 22 C 0.054 3.946 23 C -0.182 4.182 24 C 0.050 3.950 25 O -0.339 6.339 26 C -0.113 4.113 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.389 0.611 42 H 0.140 0.860 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.124 0.876 49 H 0.109 0.891 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -0.933 -3.450 4.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.312 2.688 3 C -0.570 4.570 4 C -0.567 4.567 5 C -0.415 4.415 6 C -0.115 4.115 7 C -0.143 4.143 8 C -0.052 4.052 9 C -0.052 4.052 10 C -0.090 4.090 11 C -0.105 4.105 12 C -0.182 4.182 13 O -0.355 6.355 14 Si 0.799 3.201 15 H -0.183 1.183 16 H -0.192 1.192 17 H -0.179 1.179 18 C -0.148 4.148 19 C 0.016 3.984 20 C 0.026 3.974 21 O -0.246 6.246 22 C -0.020 4.020 23 C -0.220 4.220 24 C -0.024 4.024 25 O -0.256 6.256 26 C -0.131 4.131 27 C -0.118 4.118 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.239 0.761 42 H 0.158 0.842 43 H 0.077 0.923 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.142 0.858 49 H 0.127 0.873 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.426 -1.444 -2.909 4.054 hybrid contribution 0.360 0.539 0.431 0.779 sum 2.786 -0.905 -2.478 3.837 Atomic orbital electron populations 1.26287 1.21645 1.04511 1.04475 0.77197 0.65208 0.64579 0.61785 1.26294 1.06385 1.19584 1.04743 1.26238 1.06415 1.08515 1.15484 1.28034 1.02862 0.99694 1.10894 1.21322 0.97065 0.95006 0.98133 1.21463 1.00105 1.00154 0.92562 1.18652 1.00401 0.93594 0.92523 1.19004 0.96184 0.95087 0.94911 1.21155 0.99247 0.92989 0.95566 1.20258 0.95816 0.98569 0.95834 1.24977 0.86956 0.96476 1.09831 1.86493 1.22916 1.63691 1.62404 0.85331 0.78686 0.79683 0.76448 1.18266 1.19199 1.17909 1.21153 0.97735 0.94461 1.01437 1.19096 0.91864 0.94201 0.93197 1.19270 0.95376 0.89063 0.93657 1.86341 1.30173 1.27496 1.80557 1.22848 0.80003 1.03583 0.95612 1.22454 1.01510 1.00186 0.97820 1.22936 0.83981 0.98148 0.97321 1.86343 1.15275 1.80983 1.42968 1.21323 0.99255 0.93560 0.98994 1.21261 0.97491 1.00471 0.92554 0.91597 0.90655 0.91284 0.91337 0.90619 0.91184 0.90739 0.90635 0.91238 0.83928 0.85181 0.83425 0.84590 0.76148 0.84241 0.92301 0.86574 0.86334 0.90716 0.91732 0.85798 0.87301 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.33 8.65 113.37 0.98 2.31 16 2 Si 1.13 -5.69 12.31 68.60 0.84 -4.85 16 3 C -0.46 1.55 8.53 113.37 0.97 2.52 16 4 C -0.46 2.04 8.52 113.37 0.97 3.00 16 5 C -0.38 -0.19 4.60 22.31 0.10 -0.08 16 6 C -0.10 -0.10 9.28 22.24 0.21 0.11 16 7 C -0.12 -0.42 9.51 22.49 0.21 -0.21 16 8 C -0.05 -0.33 5.28 -20.05 -0.11 -0.44 16 9 C -0.05 -0.34 5.48 -19.98 -0.11 -0.45 16 10 C -0.07 -0.25 9.07 22.52 0.20 -0.05 16 11 C -0.10 -0.22 5.39 -19.87 -0.11 -0.33 16 12 C -0.07 0.09 2.81 71.24 0.20 0.29 16 13 O -0.55 -0.11 12.77 -148.98 -1.90 -2.01 16 14 Si 0.97 -0.70 25.05 68.60 1.72 1.02 16 15 H -0.26 -0.20 7.11 99.48 0.71 0.50 16 16 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 17 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 18 C -0.13 -0.57 8.61 22.39 0.19 -0.38 16 19 C 0.06 0.47 5.73 22.42 0.13 0.59 16 20 C 0.07 0.58 5.64 22.67 0.13 0.71 16 21 O -0.33 -2.73 8.56 -83.24 -0.71 -3.44 16 22 C 0.05 0.09 6.51 71.68 0.47 0.55 16 23 C -0.18 0.23 5.93 29.98 0.18 0.41 16 24 C 0.05 0.02 6.51 71.67 0.47 0.49 16 25 O -0.34 -2.66 10.16 -84.31 -0.86 -3.51 16 26 C -0.11 -0.78 8.80 22.49 0.20 -0.59 16 27 C -0.10 -0.33 9.28 22.24 0.21 -0.12 16 28 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.07 -0.22 7.67 -2.39 -0.02 -0.24 16 34 H 0.07 -0.38 7.67 -2.39 -0.02 -0.39 16 35 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.14 -0.55 7.40 -2.91 -0.02 -0.58 16 38 H 0.13 0.04 8.04 -2.91 -0.02 0.02 16 39 H 0.15 0.20 8.04 -2.91 -0.02 0.18 16 40 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 41 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 42 H 0.14 0.31 4.86 -2.91 -0.01 0.29 16 43 H 0.06 0.05 7.93 -2.38 -0.02 0.03 16 44 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.06 -0.07 7.93 -2.39 -0.02 -0.09 16 48 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.11 0.93 7.71 -2.91 -0.02 0.91 16 50 H 0.13 -0.06 7.40 -2.91 -0.02 -0.08 16 Total: 0.00 -15.15 403.92 5.62 -9.53 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: 1.05 Total: -5.07 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.48 Total: 8.34 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -3.47 Total: -8.97 kcal Atomic # 14 Polarization: -6.39 SS G_CDS: 2.56 Total: -3.83 kcal Total: -15.15 5.62 -9.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_11771128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.127 kcal (2) G-P(sol) polarization free energy of solvation -15.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds