Wall clock time and date at job start Mon Mar 8 2021 08:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86305 * 109.47354 * 2 1 4 4 C 1.86299 * 109.46962 * 240.00289 * 2 1 3 5 5 C 1.86797 * 109.47446 * 120.00206 * 2 1 3 6 6 C 1.38360 * 119.85341 * 89.99757 * 5 2 1 7 7 C 1.37953 * 120.14816 * 179.97438 * 6 5 2 8 8 C 1.39589 * 119.85143 * 359.97438 * 7 6 5 9 9 C 1.47792 * 120.14668 * 179.97438 * 8 7 6 10 10 C 1.35940 * 125.93254 * 180.02562 * 9 8 7 11 11 C 1.40938 * 106.74152 * 179.73787 * 10 9 8 12 12 C 1.34728 * 107.02638 * 0.37103 * 11 10 9 13 13 C 1.50707 * 125.66151 * 179.88336 * 12 11 10 14 14 O 1.42903 * 109.46442 * 64.72198 * 13 12 11 15 15 Si 1.86293 * 109.47256 * 184.71764 * 13 12 11 16 16 H 1.48499 * 109.47512 * 300.00264 * 15 13 12 17 17 H 1.48505 * 109.47075 * 60.00390 * 15 13 12 18 18 H 1.48499 * 109.47038 * 180.02562 * 15 13 12 19 19 O 1.34302 * 108.67743 * 359.62565 * 12 11 10 20 20 C 1.39587 * 119.70657 * 0.25910 * 8 7 6 21 21 C 1.37961 * 119.85293 * 359.48857 * 20 8 7 22 22 H 1.09006 * 109.47068 * 299.99974 * 1 2 3 23 23 H 1.08998 * 109.47029 * 59.99623 * 1 2 3 24 24 H 1.08990 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47444 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47048 * 300.00515 * 3 2 1 27 27 H 1.08999 * 109.46665 * 60.00145 * 3 2 1 28 28 H 1.08999 * 109.47296 * 299.99780 * 4 2 1 29 29 H 1.08998 * 109.47176 * 60.00178 * 4 2 1 30 30 H 1.09003 * 109.46892 * 179.97438 * 4 2 1 31 31 H 1.08002 * 119.92479 * 0.02562 * 6 5 2 32 32 H 1.08007 * 120.07365 * 180.02562 * 7 6 5 33 33 H 1.07999 * 126.63205 * 0.02562 * 10 9 8 34 34 H 1.08005 * 126.48146 * 180.26232 * 11 10 9 35 35 H 1.08999 * 109.47345 * 304.72268 * 13 12 11 36 36 H 0.96700 * 114.00311 * 60.00230 * 14 13 12 37 37 H 1.08004 * 120.07777 * 179.74224 * 20 8 7 38 38 H 1.07995 * 119.92872 * 180.23276 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7153 -2.2445 1.4874 7 6 3.1757 -2.9009 2.6100 8 6 3.4105 -2.1858 3.7857 9 6 3.9032 -2.8826 4.9923 10 6 4.1697 -2.3053 6.1939 11 6 4.6074 -3.3350 7.0509 12 6 4.5945 -4.4763 6.3349 13 6 4.9897 -5.8381 6.8452 14 8 4.0795 -6.2458 7.8687 15 14 4.9389 -7.0651 5.4443 16 1 3.5632 -7.1249 4.8883 17 1 5.8847 -6.6414 4.3807 18 1 5.3277 -8.4071 5.9473 19 8 4.1655 -4.1998 5.0926 20 6 3.1722 -0.8109 3.8183 21 6 2.7167 -0.1658 2.6870 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.5740 1.7565 -0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1208 2.2702 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1206 -0.3643 -2.4111 30 1 3.5740 -0.8778 -1.5214 31 1 2.5344 -2.7963 0.5768 32 1 3.3549 -3.9656 2.5792 33 1 4.0619 -1.2604 6.4449 34 1 4.8997 -3.2289 8.0852 35 1 5.9995 -5.7943 7.2534 36 1 3.1599 -6.3066 7.5758 37 1 3.3478 -0.2524 4.7259 38 1 2.5355 0.8986 2.7098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12175806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:07 Heat of formation + Delta-G solvation = -33.187235 kcal Electronic energy + Delta-G solvation = -18460.399481 eV Core-core repulsion = 15585.911468 eV Total energy + Delta-G solvation = -2874.488013 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.74332 -39.85361 -37.98977 -34.32927 -33.19451 -31.95502 -30.33972 -29.34905 -28.28825 -28.25995 -26.43242 -24.04281 -23.24941 -22.26747 -21.29104 -19.14897 -18.07731 -17.53263 -17.00665 -16.45673 -15.89357 -15.76826 -15.25681 -14.84712 -14.53073 -14.11477 -14.07056 -14.03779 -13.93111 -13.80721 -13.70205 -13.62781 -13.15525 -13.10193 -13.02736 -12.95469 -12.79770 -12.30433 -12.08683 -11.99823 -11.23996 -10.93747 -10.84883 -10.75168 -10.64421 -10.35075 -9.92235 -8.91430 -0.36442 0.44907 0.85332 1.00669 1.35746 1.38182 1.57952 1.72279 1.82801 1.84585 2.02915 2.14140 2.66252 2.92149 3.28925 3.45290 3.77647 3.93322 4.01969 4.07238 4.41593 4.45903 4.48944 4.68549 4.78914 4.81363 4.85142 4.85520 4.88438 4.89504 4.90780 4.92259 4.93359 5.07848 5.30846 5.38524 5.48469 5.51958 5.60360 5.68805 5.71725 5.97976 6.01568 6.50233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.131 2.869 3 C -0.461 4.461 4 C -0.465 4.465 5 C -0.375 4.375 6 C -0.095 4.095 7 C -0.135 4.135 8 C -0.033 4.033 9 C 0.016 3.984 10 C -0.196 4.196 11 C -0.176 4.176 12 C -0.066 4.066 13 C -0.032 4.032 14 O -0.538 6.538 15 Si 0.986 3.014 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.248 1.248 19 O -0.185 6.185 20 C -0.116 4.116 21 C -0.091 4.091 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.392 0.608 37 H 0.139 0.861 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 2.283 -1.604 2.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.318 2.682 3 C -0.568 4.568 4 C -0.572 4.572 5 C -0.413 4.413 6 C -0.112 4.112 7 C -0.153 4.153 8 C -0.033 4.033 9 C -0.034 4.034 10 C -0.215 4.215 11 C -0.195 4.195 12 C -0.115 4.115 13 C -0.143 4.143 14 O -0.346 6.346 15 Si 0.809 3.191 16 H -0.189 1.189 17 H -0.192 1.192 18 H -0.171 1.171 19 O -0.083 6.083 20 C -0.134 4.134 21 C -0.109 4.109 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.242 0.758 37 H 0.157 0.843 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.381 1.402 -2.078 2.536 hybrid contribution -0.322 0.196 0.427 0.570 sum -0.704 1.598 -1.651 2.403 Atomic orbital electron populations 1.26295 1.21587 1.04426 1.04688 0.77129 0.65133 0.64728 0.61240 1.26254 1.06474 1.19044 1.05060 1.26311 1.06431 1.08476 1.15967 1.28199 1.02286 0.99271 1.11580 1.21319 0.96797 0.95344 0.97788 1.21492 1.00423 1.00052 0.93309 1.18013 1.01621 0.93610 0.90040 1.20857 1.05311 0.80751 0.96473 1.22140 1.05385 1.01855 0.92082 1.21805 1.04698 0.91098 1.01921 1.23365 1.05821 0.99706 0.82648 1.24401 0.97601 0.92169 1.00114 1.86536 1.22226 1.88956 1.36839 0.85122 0.80846 0.77935 0.75234 1.18939 1.19182 1.17139 1.83924 1.65948 1.26093 1.32348 1.21402 0.99689 0.91984 1.00349 1.21379 0.96471 1.01103 0.91943 0.91234 0.90606 0.91549 0.91205 0.90610 0.90613 0.91054 0.90585 0.91319 0.84008 0.86367 0.81232 0.81349 0.82916 0.75814 0.84285 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.90 8.65 113.37 0.98 2.89 16 2 Si 1.13 -7.17 12.30 68.60 0.84 -6.33 16 3 C -0.46 2.52 8.52 113.37 0.97 3.48 16 4 C -0.46 2.08 8.52 113.37 0.97 3.05 16 5 C -0.37 0.30 4.60 22.33 0.10 0.41 16 6 C -0.09 -0.17 9.28 22.23 0.21 0.04 16 7 C -0.13 -0.78 9.72 22.53 0.22 -0.56 16 8 C -0.03 -0.21 5.87 -20.10 -0.12 -0.33 16 9 C 0.02 0.12 7.03 24.27 0.17 0.29 16 10 C -0.20 -0.93 10.26 22.40 0.23 -0.70 16 11 C -0.18 -0.72 10.78 22.13 0.24 -0.48 16 12 C -0.07 -0.31 6.20 24.88 0.15 -0.15 16 13 C -0.03 0.00 2.98 71.24 0.21 0.21 16 14 O -0.54 -0.18 12.88 -148.98 -1.92 -2.10 16 15 Si 0.99 1.10 27.39 68.60 1.88 2.98 16 16 H -0.27 -0.94 7.11 99.48 0.71 -0.24 16 17 H -0.27 -1.14 7.11 99.48 0.71 -0.44 16 18 H -0.25 -0.37 7.11 99.48 0.71 0.33 16 19 O -0.18 -1.55 8.81 -6.26 -0.06 -1.60 16 20 C -0.12 -0.31 9.56 22.53 0.22 -0.09 16 21 C -0.09 0.03 9.28 22.23 0.21 0.23 16 22 H 0.07 -0.26 7.96 -2.38 -0.02 -0.27 16 23 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 24 H 0.07 -0.21 7.96 -2.39 -0.02 -0.22 16 25 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 26 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 27 H 0.07 -0.47 7.67 -2.39 -0.02 -0.49 16 28 H 0.07 -0.33 7.67 -2.39 -0.02 -0.34 16 29 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.14 -0.38 7.39 -2.91 -0.02 -0.40 16 32 H 0.12 0.65 7.91 -2.91 -0.02 0.63 16 33 H 0.17 0.01 7.26 -2.91 -0.02 -0.01 16 34 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 35 H 0.15 -0.57 7.96 -2.39 -0.02 -0.59 16 36 H 0.39 -2.08 8.70 -74.06 -0.64 -2.72 16 37 H 0.14 -0.17 6.99 -2.91 -0.02 -0.19 16 38 H 0.15 -0.87 7.39 -2.91 -0.02 -0.89 16 Total: 0.00 -13.05 326.72 6.66 -6.39 By element: Atomic # 1 Polarization: -8.78 SS G_CDS: 1.16 Total: -7.63 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.75 Total: 8.28 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: -1.97 Total: -3.70 kcal Atomic # 14 Polarization: -6.07 SS G_CDS: 2.72 Total: -3.34 kcal Total: -13.05 6.66 -6.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12175806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -13.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds