Wall clock time and date at job start Mon Mar 8 2021 08:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86299 * 109.47113 * 2 1 4 4 C 1.86306 * 109.47074 * 239.99757 * 2 1 3 5 5 C 1.86807 * 109.47140 * 119.99917 * 2 1 3 6 6 C 1.38322 * 119.87556 * 89.99989 * 5 2 1 7 7 C 1.38018 * 120.11852 * 179.97438 * 6 5 2 8 8 C 1.39337 * 119.87573 * 359.97438 * 7 6 5 9 9 C 1.48392 * 120.11818 * 179.97438 * 8 7 6 10 10 C 1.39323 * 120.12224 * 303.35847 * 9 8 7 11 11 C 1.38040 * 119.87583 * 179.97438 * 10 9 8 12 12 C 1.38295 * 120.12639 * 0.02562 * 11 10 9 13 13 C 1.38348 * 120.24149 * 359.97438 * 12 11 10 14 14 C 1.37999 * 120.12068 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.06168 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46759 * 105.29254 * 15 14 13 17 17 Si 1.86300 * 109.47075 * 345.29513 * 15 14 13 18 18 H 1.48505 * 109.47378 * 59.99723 * 17 15 14 19 19 H 1.48496 * 109.47233 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47124 * 299.99817 * 17 15 14 21 21 C 1.39334 * 119.76128 * 0.26339 * 8 7 6 22 22 C 1.38012 * 119.87416 * 359.48577 * 21 8 7 23 23 H 1.09002 * 109.46955 * 300.00249 * 1 2 3 24 24 H 1.08998 * 109.47054 * 59.99736 * 1 2 3 25 25 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46886 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47224 * 299.99535 * 3 2 1 28 28 H 1.08993 * 109.47454 * 60.00208 * 3 2 1 29 29 H 1.08997 * 109.47245 * 300.00124 * 4 2 1 30 30 H 1.08998 * 109.46767 * 60.00331 * 4 2 1 31 31 H 1.09001 * 109.46788 * 180.02562 * 4 2 1 32 32 H 1.07997 * 119.94285 * 359.95223 * 6 5 2 33 33 H 1.08002 * 120.06348 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.05976 * 359.95848 * 10 9 8 35 35 H 1.08006 * 119.93377 * 180.02562 * 11 10 9 36 36 H 1.07991 * 119.88197 * 180.27478 * 12 11 10 37 37 H 1.07995 * 119.93974 * 180.02562 * 13 12 11 38 38 H 1.08998 * 109.47149 * 225.29234 * 15 14 13 39 39 H 0.96695 * 113.99991 * 300.00286 * 16 15 14 40 40 H 1.07999 * 120.06226 * 179.74813 * 21 8 7 41 41 H 1.08006 * 119.94014 * 180.25414 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4857 -0.8806 1.5253 6 6 2.7153 -2.2441 1.4882 7 6 3.1759 -2.8997 2.6120 8 6 3.4100 -2.1853 3.7852 9 6 3.9046 -2.8848 4.9968 10 6 3.1881 -3.9554 5.5276 11 6 3.6532 -4.6028 6.6545 12 6 4.8277 -4.1903 7.2570 13 6 5.5432 -3.1278 6.7342 14 6 5.0881 -2.4741 5.6074 15 6 5.8682 -1.3165 5.0393 16 8 6.5465 -1.7356 3.8534 17 14 7.1149 -0.7324 6.2944 18 1 8.0449 -1.8428 6.6222 19 1 7.8841 0.4078 5.7345 20 1 6.4100 -0.2970 7.5268 21 6 3.1722 -0.8128 3.8183 22 6 2.7166 -0.1666 2.6872 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1207 2.2703 0.8899 29 1 2.1206 -1.9060 -1.5211 30 1 2.1206 -0.3645 -2.4111 31 1 3.5740 -0.8787 -1.5209 32 1 2.5336 -2.7968 0.5783 33 1 3.3553 -3.9643 2.5819 34 1 2.2705 -4.2779 5.0583 35 1 3.0988 -5.4331 7.0665 36 1 5.1903 -4.7024 8.1359 37 1 6.4600 -2.8100 7.2084 38 1 5.1856 -0.5015 4.7988 39 1 7.1717 -2.4599 3.9931 40 1 3.3481 -0.2550 4.7263 41 1 2.5358 0.8980 2.7105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12175814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:14 Heat of formation + Delta-G solvation = -31.336379 kcal Electronic energy + Delta-G solvation = -20121.804807 eV Core-core repulsion = 17282.315486 eV Total energy + Delta-G solvation = -2839.489321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04750 -39.17073 -37.50323 -33.59464 -32.65531 -31.71298 -29.95211 -29.29885 -28.39468 -28.36817 -26.79249 -24.28707 -23.23996 -22.50719 -21.65232 -18.65038 -17.75382 -17.00396 -16.77620 -16.29336 -15.78380 -15.53140 -15.50648 -14.93834 -14.69023 -14.32305 -14.22957 -14.11835 -14.03010 -13.80404 -13.66090 -13.39359 -13.27160 -13.21217 -13.15078 -13.05445 -12.84122 -12.39775 -12.13863 -11.92587 -11.90288 -11.54044 -10.98666 -10.85229 -10.71561 -10.35387 -10.05028 -9.88660 -9.64533 -9.13677 0.00624 0.31131 0.67735 0.68552 1.14416 1.39354 1.51068 1.79121 1.89982 1.90728 2.01802 2.60971 2.69103 3.06150 3.52254 3.68913 3.73907 3.93052 4.06871 4.15001 4.21968 4.40178 4.48112 4.56377 4.64660 4.73218 4.74690 4.76469 4.79670 4.80213 4.80602 4.82485 4.89408 4.99019 5.09440 5.25934 5.36056 5.46920 5.47697 5.50475 5.56489 5.57441 5.60834 5.73592 5.78578 5.96876 6.24372 6.59798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.057 2.943 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.369 4.369 6 C -0.085 4.085 7 C -0.113 4.113 8 C -0.028 4.028 9 C -0.022 4.022 10 C -0.106 4.106 11 C -0.112 4.112 12 C -0.113 4.113 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.084 4.084 16 O -0.530 6.530 17 Si 0.944 3.056 18 H -0.251 1.251 19 H -0.252 1.252 20 H -0.249 1.249 21 C -0.119 4.119 22 C -0.086 4.086 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.373 0.627 40 H 0.118 0.882 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 -0.592 0.396 0.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.249 2.751 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.410 4.410 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.028 4.028 9 C -0.023 4.023 10 C -0.124 4.124 11 C -0.130 4.130 12 C -0.131 4.131 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.195 4.195 16 O -0.334 6.334 17 Si 0.766 3.234 18 H -0.175 1.175 19 H -0.176 1.176 20 H -0.172 1.172 21 C -0.137 4.137 22 C -0.104 4.104 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.219 0.781 40 H 0.136 0.864 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.225 0.142 0.798 0.841 hybrid contribution 0.057 -0.819 0.235 0.854 sum -0.168 -0.677 1.033 1.247 Atomic orbital electron populations 1.26126 1.20573 1.04515 1.04412 0.78196 0.66766 0.66178 0.63932 1.26132 1.06528 1.18576 1.04464 1.26133 1.06516 1.08000 1.15049 1.27348 1.04167 0.99452 1.10069 1.20975 0.97213 0.94615 0.97531 1.21192 0.99829 0.99489 0.92597 1.18645 0.98411 0.93278 0.92495 1.18684 0.93916 0.95380 0.94278 1.21296 0.99746 0.95060 0.96304 1.21178 0.96349 0.99745 0.95709 1.21174 0.95200 0.96691 1.00009 1.21075 1.00262 0.96982 0.96118 1.20328 0.96057 0.98463 0.95919 1.25140 1.00953 0.98006 0.95385 1.86571 1.59049 1.56674 1.31121 0.85794 0.78982 0.80838 0.77757 1.17503 1.17588 1.17195 1.21193 1.00383 0.93483 0.98594 1.20968 0.97293 0.99507 0.92617 0.91205 0.91115 0.91209 0.91003 0.91048 0.91207 0.91223 0.91047 0.91018 0.86186 0.86451 0.85568 0.85510 0.85556 0.85833 0.86315 0.78081 0.86377 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.44 8.65 101.05 0.87 1.31 16 2 Si 1.06 -1.90 12.31 -169.99 -2.09 -3.99 16 3 C -0.45 0.51 8.52 101.05 0.86 1.37 16 4 C -0.45 0.49 8.53 101.05 0.86 1.35 16 5 C -0.37 -0.24 4.60 -39.52 -0.18 -0.42 16 6 C -0.09 -0.11 9.28 -39.63 -0.37 -0.47 16 7 C -0.11 -0.24 9.63 -39.25 -0.38 -0.61 16 8 C -0.03 -0.07 4.85 -104.90 -0.51 -0.58 16 9 C -0.02 -0.05 5.40 -104.89 -0.57 -0.61 16 10 C -0.11 -0.13 9.63 -39.25 -0.38 -0.51 16 11 C -0.11 -0.04 10.03 -39.63 -0.40 -0.44 16 12 C -0.11 -0.03 10.04 -39.52 -0.40 -0.43 16 13 C -0.13 -0.10 8.65 -39.63 -0.34 -0.44 16 14 C -0.11 -0.16 5.26 -104.29 -0.55 -0.71 16 15 C -0.08 -0.07 2.07 36.01 0.07 0.00 16 16 O -0.53 -0.82 12.82 -35.23 -0.45 -1.28 16 17 Si 0.94 0.14 25.48 -169.99 -4.33 -4.19 16 18 H -0.25 0.02 6.74 56.52 0.38 0.40 16 19 H -0.25 -0.38 7.11 56.52 0.40 0.03 16 20 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 21 C -0.12 -0.23 7.95 -39.26 -0.31 -0.54 16 22 C -0.09 -0.10 9.28 -39.63 -0.37 -0.47 16 23 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 26 H 0.07 -0.05 7.96 -51.92 -0.41 -0.46 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.09 7.67 -51.93 -0.40 -0.49 16 29 H 0.07 -0.09 7.67 -51.93 -0.40 -0.49 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.12 -0.08 7.40 -52.49 -0.39 -0.47 16 33 H 0.12 0.13 8.06 -52.49 -0.42 -0.30 16 34 H 0.13 0.01 8.06 -52.49 -0.42 -0.41 16 35 H 0.13 -0.20 8.06 -52.48 -0.42 -0.62 16 36 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 37 H 0.12 -0.06 4.88 -52.49 -0.26 -0.32 16 38 H 0.12 0.09 4.96 -51.93 -0.26 -0.16 16 39 H 0.37 -0.61 8.70 45.56 0.40 -0.21 16 40 H 0.12 0.08 7.02 -52.49 -0.37 -0.29 16 41 H 0.12 -0.10 7.40 -52.48 -0.39 -0.49 16 LS Contribution 337.60 15.07 5.09 5.09 Total: 0.00 -4.85 337.60 -9.32 -14.17 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -5.46 Total: -7.60 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.07 Total: -2.20 kcal Atomic # 8 Polarization: -0.82 SS G_CDS: -0.45 Total: -1.28 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -6.42 Total: -8.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -4.85 -9.32 -14.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12175814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.167 kcal (2) G-P(sol) polarization free energy of solvation -4.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds