Wall clock time and date at job start Mon Mar 8 2021 08:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86300 * 109.47159 * 2 1 4 4 C 1.86302 * 109.46698 * 239.99957 * 2 1 3 5 5 C 1.86798 * 109.47109 * 120.00286 * 2 1 3 6 6 C 1.38311 * 119.87816 * 90.00014 * 5 2 1 7 7 C 1.38022 * 120.12162 * 180.02562 * 6 5 2 8 8 C 1.39335 * 119.87749 * 359.96863 * 7 6 5 9 9 C 1.48396 * 120.12156 * 179.97438 * 8 7 6 10 10 C 1.39720 * 120.53453 * 180.02562 * 9 8 7 11 11 C 1.38455 * 118.31125 * 179.97438 * 10 9 8 12 12 C 1.50704 * 120.35858 * 179.72636 * 11 10 9 13 13 O 1.42897 * 109.47126 * 299.99587 * 12 11 10 14 14 Si 1.86304 * 109.47156 * 179.97438 * 12 11 10 15 15 H 1.48502 * 109.46951 * 59.99817 * 14 12 11 16 16 H 1.48496 * 109.47149 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47153 * 299.99742 * 14 12 11 18 18 C 1.38266 * 119.28512 * 359.97438 * 11 10 9 19 19 N 1.31921 * 121.03093 * 359.97438 * 18 11 10 20 20 C 1.31716 * 121.84790 * 0.02562 * 19 18 11 21 21 C 1.39337 * 119.75474 * 0.25828 * 8 7 6 22 22 C 1.38016 * 119.88156 * 359.49453 * 21 8 7 23 23 H 1.09000 * 109.46876 * 300.00273 * 1 2 3 24 24 H 1.09000 * 109.47158 * 59.99332 * 1 2 3 25 25 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46998 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47173 * 300.00105 * 3 2 1 28 28 H 1.08992 * 109.47156 * 60.00051 * 3 2 1 29 29 H 1.08992 * 109.47289 * 300.00257 * 4 2 1 30 30 H 1.09001 * 109.47188 * 60.00169 * 4 2 1 31 31 H 1.09003 * 109.47108 * 179.97438 * 4 2 1 32 32 H 1.07997 * 119.94466 * 359.97438 * 6 5 2 33 33 H 1.08004 * 120.06119 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.84884 * 359.95645 * 10 9 8 35 35 H 1.08998 * 109.47418 * 60.00007 * 12 11 10 36 36 H 0.96698 * 114.00006 * 300.00276 * 13 12 11 37 37 H 1.08007 * 119.49020 * 180.02562 * 18 11 10 38 38 H 1.08001 * 119.70086 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.05765 * 179.71861 * 21 8 7 40 40 H 1.08001 * 119.94429 * 180.23207 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4880 7 6 3.1750 -2.8999 2.6121 8 6 3.4082 -2.1858 3.7857 9 6 3.9017 -2.8856 4.9976 10 6 4.1379 -2.1782 6.1791 11 6 4.5976 -2.8772 7.2823 12 6 4.8734 -2.1591 8.5782 13 8 5.8742 -1.1613 8.3663 14 14 5.4738 -3.3813 9.8498 15 1 6.7209 -4.0264 9.3661 16 1 5.7463 -2.6736 11.1265 17 1 4.4335 -4.4178 10.0700 18 6 4.8057 -4.2403 7.1807 19 7 4.5727 -4.8815 6.0516 20 6 4.1351 -4.2591 4.9764 21 6 3.1705 -0.8133 3.8187 22 6 2.7159 -0.1667 2.6873 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.5741 1.7564 -0.0005 27 1 2.1208 2.2703 -0.8900 28 1 2.1208 2.2703 0.8899 29 1 2.1206 -1.9058 -1.5212 30 1 2.1206 -0.3644 -2.4112 31 1 3.5740 -0.8779 -1.5215 32 1 2.5341 -2.7967 0.5781 33 1 3.3544 -3.9645 2.5819 34 1 3.9667 -1.1131 6.2305 35 1 3.9580 -1.6860 8.9335 36 1 6.7178 -1.5116 8.0489 37 1 5.1638 -4.7889 8.0394 38 1 3.9563 -4.8183 4.0699 39 1 3.3453 -0.2557 4.7271 40 1 2.5350 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12201906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:27 Heat of formation + Delta-G solvation = -21.506837 kcal Electronic energy + Delta-G solvation = -19545.890567 eV Core-core repulsion = 16641.401576 eV Total energy + Delta-G solvation = -2904.488991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61537 -39.74244 -37.94785 -34.40863 -33.55230 -31.96050 -30.26719 -29.44078 -28.49226 -28.43699 -27.28569 -25.22796 -24.08287 -22.70768 -21.76630 -18.94605 -18.15656 -17.75244 -17.30536 -16.51533 -16.32704 -15.80125 -15.37458 -14.99617 -14.86683 -14.70356 -14.64970 -14.21985 -14.12717 -13.98967 -13.81474 -13.66083 -13.40117 -13.30386 -13.27882 -13.13773 -13.09013 -12.56259 -12.25699 -12.04067 -11.94332 -11.41123 -10.93689 -10.92895 -10.88257 -10.66612 -10.44356 -10.33941 -9.85962 -9.13544 -0.54497 0.09377 0.50243 0.73618 1.03347 1.35985 1.42569 1.67447 1.81888 1.83274 1.92733 2.51393 2.60801 3.05268 3.17547 3.35260 3.48634 3.65073 3.79772 3.82395 3.91146 4.04563 4.29543 4.38125 4.42608 4.57552 4.61655 4.67658 4.68201 4.71835 4.72703 4.73324 4.74283 4.91115 4.99414 4.99585 5.12120 5.34223 5.42047 5.47499 5.51432 5.57946 5.58728 5.60069 6.05005 6.40453 6.85908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.366 4.366 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.038 4.038 9 C -0.093 4.093 10 C -0.040 4.040 11 C -0.169 4.169 12 C -0.076 4.076 13 O -0.537 6.537 14 Si 0.944 3.056 15 H -0.247 1.247 16 H -0.248 1.248 17 H -0.247 1.247 18 C 0.093 3.907 19 N -0.473 5.473 20 C 0.113 3.887 21 C -0.118 4.118 22 C -0.085 4.085 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.122 0.878 36 H 0.378 0.622 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 1.457 -1.462 2.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.408 4.408 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.039 4.039 9 C -0.095 4.095 10 C -0.065 4.065 11 C -0.171 4.171 12 C -0.187 4.187 13 O -0.342 6.342 14 Si 0.766 3.234 15 H -0.171 1.171 16 H -0.172 1.172 17 H -0.170 1.170 18 C -0.063 4.063 19 N -0.180 5.180 20 C -0.045 4.045 21 C -0.136 4.136 22 C -0.103 4.103 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.140 0.860 36 H 0.225 0.775 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.598 0.306 -0.607 0.905 hybrid contribution 0.137 0.707 -0.326 0.790 sum -0.461 1.013 -0.932 1.452 Atomic orbital electron populations 1.26128 1.20452 1.04594 1.04508 0.78182 0.66869 0.66127 0.63693 1.26138 1.06479 1.18557 1.04589 1.26137 1.06476 1.08060 1.15079 1.27481 1.03476 0.99516 1.10280 1.21028 0.96990 0.94616 0.97666 1.21294 0.99945 0.99770 0.92657 1.18605 0.99674 0.93430 0.92165 1.19904 1.00849 0.94807 0.93975 1.21543 0.93533 1.00709 0.90738 1.21307 1.02661 0.95384 0.97790 1.24917 0.96171 0.98695 0.98959 1.86524 1.24315 1.34055 1.89260 0.85742 0.81404 0.77544 0.78695 1.17092 1.17196 1.17013 1.22700 0.96397 0.91196 0.96047 1.67682 1.11164 1.39812 0.99300 1.23009 0.93754 0.91020 0.96717 1.21304 0.99850 0.93529 0.98933 1.21030 0.97017 0.99763 0.92499 0.91174 0.91017 0.91159 0.91042 0.90932 0.91165 0.91152 0.90934 0.91040 0.85775 0.85864 0.83926 0.86045 0.77499 0.83161 0.82156 0.85968 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.77 8.65 101.05 0.87 1.64 16 2 Si 1.06 -2.97 12.31 -169.99 -2.09 -5.07 16 3 C -0.45 0.92 8.52 101.05 0.86 1.78 16 4 C -0.45 0.93 8.52 101.05 0.86 1.80 16 5 C -0.37 0.21 4.60 -39.52 -0.18 0.03 16 6 C -0.09 0.01 9.28 -39.63 -0.37 -0.35 16 7 C -0.12 -0.06 9.44 -39.25 -0.37 -0.43 16 8 C -0.04 -0.05 5.88 -104.90 -0.62 -0.66 16 9 C -0.09 -0.14 5.89 -104.75 -0.62 -0.75 16 10 C -0.04 -0.03 9.13 -38.95 -0.36 -0.39 16 11 C -0.17 -0.09 5.39 -104.53 -0.56 -0.65 16 12 C -0.08 0.08 2.83 36.01 0.10 0.18 16 13 O -0.54 0.21 12.78 -35.23 -0.45 -0.24 16 14 Si 0.94 -1.03 25.10 -169.99 -4.27 -5.30 16 15 H -0.25 0.20 7.11 56.52 0.40 0.60 16 16 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 17 H -0.25 0.11 7.11 56.52 0.40 0.51 16 18 C 0.09 0.15 9.84 -17.50 -0.17 -0.02 16 19 N -0.47 -1.49 10.35 -12.97 -0.13 -1.62 16 20 C 0.11 0.20 10.60 -17.19 -0.18 0.02 16 21 C -0.12 -0.08 9.44 -39.25 -0.37 -0.45 16 22 C -0.09 0.00 9.28 -39.63 -0.37 -0.36 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 29 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.12 -0.26 7.40 -52.49 -0.39 -0.65 16 33 H 0.12 -0.15 6.24 -52.48 -0.33 -0.48 16 34 H 0.14 -0.06 6.33 -52.49 -0.33 -0.39 16 35 H 0.12 -0.24 7.96 -51.93 -0.41 -0.65 16 36 H 0.38 -1.27 8.70 45.56 0.40 -0.87 16 37 H 0.15 0.01 4.88 -52.48 -0.26 -0.25 16 38 H 0.16 -0.06 6.23 -52.49 -0.33 -0.38 16 39 H 0.12 -0.09 6.28 -52.48 -0.33 -0.42 16 40 H 0.12 -0.24 7.40 -52.49 -0.39 -0.63 16 LS Contribution 331.65 15.07 5.00 5.00 Total: 0.00 -5.78 331.65 -8.26 -14.04 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -4.85 Total: -8.17 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.47 Total: 1.36 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -0.13 Total: -1.62 kcal Atomic # 8 Polarization: 0.21 SS G_CDS: -0.45 Total: -0.24 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: -6.36 Total: -10.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -5.78 -8.26 -14.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12201906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.467 kcal (2) G-P(sol) polarization free energy of solvation -5.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds