Wall clock time and date at job start Mon Mar 8 2021 08:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86300 * 109.47159 * 2 1 4 4 C 1.86302 * 109.46698 * 239.99957 * 2 1 3 5 5 C 1.86798 * 109.47109 * 120.00286 * 2 1 3 6 6 C 1.38311 * 119.87816 * 90.00014 * 5 2 1 7 7 C 1.38022 * 120.12162 * 180.02562 * 6 5 2 8 8 C 1.39335 * 119.87749 * 359.96863 * 7 6 5 9 9 C 1.48396 * 120.12156 * 179.97438 * 8 7 6 10 10 C 1.39720 * 120.53453 * 180.02562 * 9 8 7 11 11 C 1.38455 * 118.31125 * 179.97438 * 10 9 8 12 12 C 1.50704 * 120.35858 * 179.72636 * 11 10 9 13 13 O 1.42897 * 109.47126 * 299.99587 * 12 11 10 14 14 Si 1.86304 * 109.47156 * 179.97438 * 12 11 10 15 15 H 1.48502 * 109.46951 * 59.99817 * 14 12 11 16 16 H 1.48496 * 109.47149 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47153 * 299.99742 * 14 12 11 18 18 C 1.38266 * 119.28512 * 359.97438 * 11 10 9 19 19 N 1.31921 * 121.03093 * 359.97438 * 18 11 10 20 20 C 1.31716 * 121.84790 * 0.02562 * 19 18 11 21 21 C 1.39337 * 119.75474 * 0.25828 * 8 7 6 22 22 C 1.38016 * 119.88156 * 359.49453 * 21 8 7 23 23 H 1.09000 * 109.46876 * 300.00273 * 1 2 3 24 24 H 1.09000 * 109.47158 * 59.99332 * 1 2 3 25 25 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46998 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47173 * 300.00105 * 3 2 1 28 28 H 1.08992 * 109.47156 * 60.00051 * 3 2 1 29 29 H 1.08992 * 109.47289 * 300.00257 * 4 2 1 30 30 H 1.09001 * 109.47188 * 60.00169 * 4 2 1 31 31 H 1.09003 * 109.47108 * 179.97438 * 4 2 1 32 32 H 1.07997 * 119.94466 * 359.97438 * 6 5 2 33 33 H 1.08004 * 120.06119 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.84884 * 359.95645 * 10 9 8 35 35 H 1.08998 * 109.47418 * 60.00007 * 12 11 10 36 36 H 0.96698 * 114.00006 * 300.00276 * 13 12 11 37 37 H 1.08007 * 119.49020 * 180.02562 * 18 11 10 38 38 H 1.08001 * 119.70086 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.05765 * 179.71861 * 21 8 7 40 40 H 1.08001 * 119.94429 * 180.23207 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4880 7 6 3.1750 -2.8999 2.6121 8 6 3.4082 -2.1858 3.7857 9 6 3.9017 -2.8856 4.9976 10 6 4.1379 -2.1782 6.1791 11 6 4.5976 -2.8772 7.2823 12 6 4.8734 -2.1591 8.5782 13 8 5.8742 -1.1613 8.3663 14 14 5.4738 -3.3813 9.8498 15 1 6.7209 -4.0264 9.3661 16 1 5.7463 -2.6736 11.1265 17 1 4.4335 -4.4178 10.0700 18 6 4.8057 -4.2403 7.1807 19 7 4.5727 -4.8815 6.0516 20 6 4.1351 -4.2591 4.9764 21 6 3.1705 -0.8133 3.8187 22 6 2.7159 -0.1667 2.6873 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.5741 1.7564 -0.0005 27 1 2.1208 2.2703 -0.8900 28 1 2.1208 2.2703 0.8899 29 1 2.1206 -1.9058 -1.5212 30 1 2.1206 -0.3644 -2.4112 31 1 3.5740 -0.8779 -1.5215 32 1 2.5341 -2.7967 0.5781 33 1 3.3544 -3.9645 2.5819 34 1 3.9667 -1.1131 6.2305 35 1 3.9580 -1.6860 8.9335 36 1 6.7178 -1.5116 8.0489 37 1 5.1638 -4.7889 8.0394 38 1 3.9563 -4.8183 4.0699 39 1 3.3453 -0.2557 4.7271 40 1 2.5350 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12201906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:26 Heat of formation + Delta-G solvation = -13.529512 kcal Electronic energy + Delta-G solvation = -19545.544644 eV Core-core repulsion = 16641.401576 eV Total energy + Delta-G solvation = -2904.143068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66044 -39.70796 -37.90951 -34.43697 -33.57729 -31.91456 -30.23653 -29.28726 -28.30415 -28.26045 -27.27525 -25.26302 -24.06605 -22.69934 -21.75867 -18.94650 -18.14508 -17.75100 -17.31942 -16.46980 -16.28362 -15.76202 -15.35870 -14.96768 -14.91959 -14.65215 -14.61227 -14.04796 -13.99563 -13.93581 -13.69515 -13.58556 -13.35614 -13.15981 -13.09646 -13.01985 -12.94835 -12.52132 -12.20744 -12.02889 -11.89265 -11.40201 -10.85896 -10.80130 -10.74640 -10.61357 -10.51551 -10.32877 -9.83323 -9.14237 -0.57896 0.03862 0.52932 0.72835 1.10835 1.43071 1.48639 1.85264 1.88004 2.03757 2.10423 2.57535 2.67741 3.06172 3.16967 3.42352 3.49068 3.66927 3.77567 3.78553 3.95059 4.09694 4.31213 4.40476 4.51990 4.61735 4.65802 4.85036 4.85680 4.89075 4.90031 4.90450 4.91244 4.94526 4.97262 4.99615 5.17360 5.35451 5.54927 5.58171 5.60762 5.60907 5.68869 5.72113 6.10779 6.60593 6.77618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.128 2.872 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.377 4.377 6 C -0.097 4.097 7 C -0.131 4.131 8 C -0.055 4.055 9 C -0.096 4.096 10 C -0.047 4.047 11 C -0.164 4.164 12 C -0.072 4.072 13 O -0.548 6.548 14 Si 0.976 3.024 15 H -0.251 1.251 16 H -0.266 1.266 17 H -0.256 1.256 18 C 0.079 3.921 19 N -0.498 5.498 20 C 0.100 3.900 21 C -0.131 4.131 22 C -0.097 4.097 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.390 0.610 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.131 0.869 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 2.068 -1.954 2.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.416 4.416 6 C -0.115 4.115 7 C -0.149 4.149 8 C -0.056 4.056 9 C -0.098 4.098 10 C -0.072 4.072 11 C -0.166 4.166 12 C -0.183 4.183 13 O -0.355 6.355 14 Si 0.800 3.200 15 H -0.175 1.175 16 H -0.191 1.191 17 H -0.180 1.180 18 C -0.077 4.077 19 N -0.206 5.206 20 C -0.057 4.057 21 C -0.149 4.149 22 C -0.115 4.115 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.239 0.761 37 H 0.178 0.822 38 H 0.191 0.809 39 H 0.149 0.851 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.783 0.909 -1.096 1.625 hybrid contribution 0.192 0.536 -0.192 0.601 sum -0.591 1.445 -1.288 2.024 Atomic orbital electron populations 1.26303 1.21731 1.04440 1.04527 0.77149 0.65077 0.64610 0.61677 1.26285 1.06419 1.19431 1.04858 1.26283 1.06423 1.08525 1.15741 1.28045 1.02714 0.99660 1.11192 1.21350 0.96834 0.95112 0.98172 1.21552 0.99997 1.00551 0.92798 1.18736 1.00583 0.93888 0.92396 1.20017 1.00623 0.94790 0.94392 1.21743 0.93450 1.01311 0.90685 1.21422 1.01894 0.95012 0.98304 1.24944 0.96635 0.98637 0.98046 1.86496 1.25117 1.34566 1.89318 0.85282 0.80678 0.76640 0.77390 1.17511 1.19093 1.17990 1.22935 0.96813 0.91888 0.96105 1.67666 1.12106 1.40721 1.00067 1.23250 0.93973 0.91480 0.96987 1.21530 1.00040 0.93566 0.99738 1.21340 0.96918 1.00779 0.92473 0.91447 0.90727 0.91417 0.91294 0.90719 0.90898 0.90852 0.90726 0.91282 0.84035 0.84794 0.82867 0.84992 0.76129 0.82233 0.80885 0.85120 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.83 8.65 113.37 0.98 2.81 16 2 Si 1.13 -7.13 12.31 68.60 0.84 -6.29 16 3 C -0.46 2.22 8.52 113.37 0.97 3.19 16 4 C -0.46 2.26 8.52 113.37 0.97 3.22 16 5 C -0.38 0.55 4.60 22.31 0.10 0.65 16 6 C -0.10 0.04 9.28 22.24 0.21 0.25 16 7 C -0.13 -0.19 9.44 22.48 0.21 0.02 16 8 C -0.06 -0.18 5.88 -20.04 -0.12 -0.29 16 9 C -0.10 -0.36 5.89 -19.95 -0.12 -0.48 16 10 C -0.05 -0.10 9.13 22.68 0.21 0.11 16 11 C -0.16 -0.22 5.39 -19.80 -0.11 -0.33 16 12 C -0.07 0.15 2.83 71.24 0.20 0.35 16 13 O -0.55 0.60 12.78 -148.98 -1.90 -1.30 16 14 Si 0.98 -1.95 25.10 68.60 1.72 -0.23 16 15 H -0.25 0.38 7.11 99.48 0.71 1.09 16 16 H -0.27 -0.25 7.11 99.48 0.71 0.46 16 17 H -0.26 0.15 7.11 99.48 0.71 0.85 16 18 C 0.08 0.31 9.84 84.69 0.83 1.15 16 19 N -0.50 -3.64 10.35 -194.96 -2.02 -5.66 16 20 C 0.10 0.46 10.60 84.97 0.90 1.36 16 21 C -0.13 -0.22 9.44 22.48 0.21 -0.01 16 22 C -0.10 0.03 9.28 22.24 0.21 0.23 16 23 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 24 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 25 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 26 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 28 H 0.07 -0.38 7.67 -2.39 -0.02 -0.40 16 29 H 0.07 -0.39 7.67 -2.39 -0.02 -0.41 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 31 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.14 -0.69 7.40 -2.91 -0.02 -0.71 16 33 H 0.13 -0.26 6.24 -2.91 -0.02 -0.28 16 34 H 0.15 -0.12 6.33 -2.91 -0.02 -0.14 16 35 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 36 H 0.39 -2.69 8.70 -74.06 -0.64 -3.33 16 37 H 0.16 0.12 4.88 -2.91 -0.01 0.11 16 38 H 0.17 0.06 6.23 -2.91 -0.02 0.04 16 39 H 0.13 -0.16 6.28 -2.91 -0.02 -0.17 16 40 H 0.14 -0.63 7.40 -2.91 -0.02 -0.65 16 Total: 0.00 -13.04 331.65 5.46 -7.59 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: 1.16 Total: -6.34 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 5.65 Total: 12.24 kcal Atomic # 7 Polarization: -3.64 SS G_CDS: -2.02 Total: -5.66 kcal Atomic # 8 Polarization: 0.60 SS G_CDS: -1.90 Total: -1.30 kcal Atomic # 14 Polarization: -9.09 SS G_CDS: 2.57 Total: -6.52 kcal Total: -13.04 5.46 -7.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12201906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.943 kcal (2) G-P(sol) polarization free energy of solvation -13.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds