Wall clock time and date at job start Mon Mar 8 2021 08:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.46847 * 2 1 4 4 C 1.86294 * 109.47098 * 240.00126 * 2 1 3 5 5 C 1.86796 * 109.47094 * 119.99937 * 2 1 3 6 6 C 1.38326 * 119.87352 * 90.00414 * 5 2 1 7 7 C 1.38012 * 120.12136 * 180.02562 * 6 5 2 8 8 C 1.39364 * 119.87844 * 359.97438 * 7 6 5 9 9 C 1.48326 * 120.12356 * 180.02562 * 8 7 6 10 10 C 1.39374 * 120.11208 * 310.26539 * 9 8 7 11 11 C 1.38012 * 120.00494 * 180.23447 * 10 9 8 12 12 C 1.50706 * 119.85342 * 179.77321 * 11 10 9 13 13 O 1.42895 * 109.46938 * 299.72271 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 179.72435 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38321 * 120.28713 * 359.49430 * 11 10 9 19 19 C 1.38623 * 120.29043 * 0.25820 * 18 11 10 20 20 C 1.39104 * 119.90008 * 359.97438 * 19 18 11 21 21 O 1.36417 * 108.70790 * 180.02562 * 20 19 18 22 22 C 1.43995 * 105.48133 * 342.73257 * 21 20 19 23 23 O 1.36530 * 131.46719 * 180.02562 * 19 18 11 24 24 C 1.39366 * 119.74856 * 0.27603 * 8 7 6 25 25 C 1.38014 * 119.87635 * 359.46921 * 24 8 7 26 26 H 1.08998 * 109.47168 * 300.00201 * 1 2 3 27 27 H 1.09000 * 109.47176 * 60.00058 * 1 2 3 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47135 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47185 * 299.99936 * 3 2 1 31 31 H 1.09002 * 109.46900 * 60.00480 * 3 2 1 32 32 H 1.08998 * 109.47251 * 299.99999 * 4 2 1 33 33 H 1.09006 * 109.47182 * 60.00338 * 4 2 1 34 34 H 1.09004 * 109.47450 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.94122 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.06217 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.99713 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47161 * 59.72537 * 12 11 10 39 39 H 0.96698 * 114.00355 * 299.99977 * 13 12 11 40 40 H 1.08001 * 119.85789 * 180.27228 * 18 11 10 41 41 H 1.08994 * 110.57785 * 268.52877 * 22 21 20 42 42 H 1.09002 * 110.57300 * 145.64064 * 22 21 20 43 43 H 1.07998 * 120.05990 * 179.70760 * 24 8 7 44 44 H 1.07993 * 119.93743 * 180.25515 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7154 -2.2441 1.4880 7 6 3.1749 -2.8999 2.6120 8 6 3.4080 -2.1858 3.7859 9 6 3.9024 -2.8850 4.9969 10 6 3.2682 -4.0429 5.4437 11 6 3.7271 -4.6890 6.5736 12 6 3.0355 -5.9379 7.0566 13 8 1.6722 -5.6392 7.3631 14 14 3.8918 -6.5699 8.5857 15 1 3.8388 -5.5327 9.6472 16 1 3.2100 -7.8002 9.0621 17 1 5.3086 -6.8804 8.2672 18 6 4.8225 -4.1986 7.2613 19 6 5.4656 -3.0509 6.8247 20 6 5.0085 -2.3889 5.6898 21 8 5.8007 -1.3005 5.4692 22 6 6.4947 -1.0724 6.7101 23 8 6.5463 -2.3773 7.3169 24 6 3.1698 -0.8130 3.8190 25 6 2.7153 -0.1666 2.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7566 0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8901 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3643 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5341 -2.7967 0.5780 36 1 3.3536 -3.9647 2.5821 37 1 2.4149 -4.4321 4.9081 38 1 3.0744 -6.6992 6.2775 39 1 1.5615 -4.9678 8.0502 40 1 5.1784 -4.7123 8.1421 41 1 5.9367 -0.3789 7.3392 42 1 7.5007 -0.6969 6.5230 43 1 3.3442 -0.2555 4.7274 44 1 2.5343 0.8978 2.7109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12203822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:35 Heat of formation + Delta-G solvation = -87.000875 kcal Electronic energy + Delta-G solvation = -25501.493444 eV Core-core repulsion = 21893.999805 eV Total energy + Delta-G solvation = -3607.493639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.25268 -40.28325 -39.35661 -37.32333 -37.22723 -33.64040 -31.92496 -31.42670 -30.09026 -29.37462 -28.43095 -28.39673 -27.42106 -26.17650 -24.64341 -23.62016 -22.92504 -21.73704 -19.20808 -19.05768 -18.52155 -17.71502 -17.57815 -16.87831 -16.23245 -16.19605 -15.98633 -15.77822 -15.34877 -15.17970 -14.72778 -14.52640 -14.35441 -14.17255 -14.08832 -13.98895 -13.92501 -13.85294 -13.75404 -13.43304 -13.32010 -13.24877 -13.16328 -13.08863 -12.55066 -12.28100 -12.14429 -12.05911 -11.86291 -11.74393 -11.05204 -10.89179 -10.81934 -10.51652 -10.19749 -9.74549 -9.25876 -9.07893 -0.27603 0.02708 0.54124 0.60947 1.08506 1.39490 1.47605 1.67932 1.73498 1.86599 1.87294 1.97262 2.36697 2.38927 2.56437 2.98116 3.23736 3.37992 3.57426 3.66239 3.82322 3.90949 4.02918 4.06485 4.13721 4.16184 4.29766 4.49498 4.53064 4.66827 4.71405 4.72534 4.75862 4.76331 4.77333 4.77414 4.80687 4.90489 5.02893 5.03465 5.19744 5.25408 5.29285 5.44271 5.51875 5.53744 5.55434 5.66522 5.68142 6.03737 6.15783 6.47687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.366 4.366 6 C -0.088 4.088 7 C -0.113 4.113 8 C -0.041 4.041 9 C -0.027 4.027 10 C -0.067 4.067 11 C -0.111 4.111 12 C -0.074 4.074 13 O -0.536 6.536 14 Si 0.945 3.055 15 H -0.250 1.250 16 H -0.250 1.250 17 H -0.249 1.249 18 C -0.106 4.106 19 C 0.040 3.960 20 C 0.051 3.949 21 O -0.299 6.299 22 C 0.211 3.789 23 O -0.306 6.306 24 C -0.105 4.105 25 C -0.088 4.088 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.378 0.622 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 1.236 -0.212 1.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.408 4.408 6 C -0.106 4.106 7 C -0.131 4.131 8 C -0.041 4.041 9 C -0.027 4.027 10 C -0.085 4.085 11 C -0.111 4.111 12 C -0.184 4.184 13 O -0.341 6.341 14 Si 0.767 3.233 15 H -0.173 1.173 16 H -0.174 1.174 17 H -0.172 1.172 18 C -0.125 4.125 19 C -0.005 4.005 20 C 0.006 3.994 21 O -0.215 6.215 22 C 0.099 3.901 23 O -0.222 6.222 24 C -0.123 4.123 25 C -0.106 4.106 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.225 0.775 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.216 0.537 0.098 0.587 hybrid contribution 0.339 0.782 0.318 0.910 sum 0.123 1.319 0.415 1.389 Atomic orbital electron populations 1.26119 1.20432 1.04596 1.04462 0.78190 0.66885 0.66116 0.63773 1.26139 1.06465 1.18608 1.04524 1.26135 1.06466 1.08060 1.15055 1.27440 1.03633 0.99510 1.10167 1.21005 0.97344 0.94614 0.97651 1.21277 0.99644 0.99703 0.92450 1.18584 0.99904 0.93453 0.92182 1.17865 0.92549 0.96301 0.96034 1.20881 0.99479 0.92649 0.95498 1.19944 0.96271 0.98507 0.96409 1.24907 0.87240 0.96673 1.09609 1.86529 1.22678 1.63172 1.61689 0.85747 0.79621 0.81097 0.76839 1.17323 1.17413 1.17225 1.19947 0.95896 0.95296 1.01311 1.19529 0.89343 0.96886 0.94693 1.19760 0.93892 0.90201 0.95505 1.87421 1.54538 1.45056 1.34498 1.25732 0.99731 0.84926 0.79665 1.87413 1.42276 1.26072 1.66484 1.21216 0.99142 0.93278 0.98699 1.20992 0.97453 0.99613 0.92524 0.91172 0.91071 0.91135 0.91070 0.90975 0.91196 0.91146 0.90980 0.91066 0.85886 0.85983 0.83613 0.85832 0.77489 0.84886 0.89520 0.84783 0.86465 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.59 8.65 101.05 0.87 1.46 16 2 Si 1.06 -2.33 12.31 -169.99 -2.09 -4.42 16 3 C -0.45 0.66 8.52 101.05 0.86 1.53 16 4 C -0.45 0.69 8.52 101.05 0.86 1.55 16 5 C -0.37 -0.11 4.60 -39.52 -0.18 -0.29 16 6 C -0.09 -0.07 9.28 -39.63 -0.37 -0.43 16 7 C -0.11 -0.18 9.50 -39.25 -0.37 -0.56 16 8 C -0.04 -0.11 5.47 -104.91 -0.57 -0.68 16 9 C -0.03 -0.07 5.48 -104.81 -0.57 -0.64 16 10 C -0.07 -0.07 9.06 -39.24 -0.36 -0.42 16 11 C -0.11 -0.05 5.38 -104.67 -0.56 -0.61 16 12 C -0.07 0.07 2.81 36.01 0.10 0.18 16 13 O -0.54 0.24 12.77 -35.23 -0.45 -0.21 16 14 Si 0.94 -0.77 25.06 -169.99 -4.26 -5.03 16 15 H -0.25 0.13 7.11 56.52 0.40 0.53 16 16 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 17 H -0.25 0.00 7.11 56.52 0.40 0.41 16 18 C -0.11 -0.15 8.67 -39.41 -0.34 -0.49 16 19 C 0.04 0.12 7.15 -39.12 -0.28 -0.16 16 20 C 0.05 0.16 6.67 -38.74 -0.26 -0.10 16 21 O -0.30 -0.86 11.17 -45.42 -0.51 -1.37 16 22 C 0.21 0.00 8.89 101.05 0.90 0.90 16 23 O -0.31 -0.83 11.41 -45.79 -0.52 -1.36 16 24 C -0.11 -0.24 9.33 -39.24 -0.37 -0.60 16 25 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 32 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.12 -0.16 7.40 -52.49 -0.39 -0.55 16 36 H 0.12 0.02 8.04 -52.48 -0.42 -0.40 16 37 H 0.15 -0.01 8.03 -52.49 -0.42 -0.44 16 38 H 0.12 -0.26 7.96 -51.93 -0.41 -0.68 16 39 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 40 H 0.13 0.04 4.85 -52.49 -0.25 -0.22 16 41 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 42 H 0.13 -0.36 8.14 -51.93 -0.42 -0.79 16 43 H 0.12 0.20 8.05 -52.49 -0.42 -0.23 16 44 H 0.12 -0.11 7.40 -52.49 -0.39 -0.50 16 LS Contribution 369.09 15.07 5.56 5.56 Total: 0.00 -6.44 369.09 -8.92 -15.36 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: -5.65 Total: -8.70 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.01 Total: 0.16 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: -1.48 Total: -2.93 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: -6.35 Total: -9.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -6.44 -8.92 -15.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12203822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.642 kcal (2) G-P(sol) polarization free energy of solvation -6.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds