Wall clock time and date at job start Mon Mar 8 2021 08:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.46847 * 2 1 4 4 C 1.86294 * 109.47098 * 240.00126 * 2 1 3 5 5 C 1.86796 * 109.47094 * 119.99937 * 2 1 3 6 6 C 1.38326 * 119.87352 * 90.00414 * 5 2 1 7 7 C 1.38012 * 120.12136 * 180.02562 * 6 5 2 8 8 C 1.39364 * 119.87844 * 359.97438 * 7 6 5 9 9 C 1.48326 * 120.12356 * 180.02562 * 8 7 6 10 10 C 1.39374 * 120.11208 * 310.26539 * 9 8 7 11 11 C 1.38012 * 120.00494 * 180.23447 * 10 9 8 12 12 C 1.50706 * 119.85342 * 179.77321 * 11 10 9 13 13 O 1.42895 * 109.46938 * 299.72271 * 12 11 10 14 14 Si 1.86299 * 109.46748 * 179.72435 * 12 11 10 15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11 16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11 18 18 C 1.38321 * 120.28713 * 359.49430 * 11 10 9 19 19 C 1.38623 * 120.29043 * 0.25820 * 18 11 10 20 20 C 1.39104 * 119.90008 * 359.97438 * 19 18 11 21 21 O 1.36417 * 108.70790 * 180.02562 * 20 19 18 22 22 C 1.43995 * 105.48133 * 342.73257 * 21 20 19 23 23 O 1.36530 * 131.46719 * 180.02562 * 19 18 11 24 24 C 1.39366 * 119.74856 * 0.27603 * 8 7 6 25 25 C 1.38014 * 119.87635 * 359.46921 * 24 8 7 26 26 H 1.08998 * 109.47168 * 300.00201 * 1 2 3 27 27 H 1.09000 * 109.47176 * 60.00058 * 1 2 3 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47135 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47185 * 299.99936 * 3 2 1 31 31 H 1.09002 * 109.46900 * 60.00480 * 3 2 1 32 32 H 1.08998 * 109.47251 * 299.99999 * 4 2 1 33 33 H 1.09006 * 109.47182 * 60.00338 * 4 2 1 34 34 H 1.09004 * 109.47450 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.94122 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.06217 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.99713 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47161 * 59.72537 * 12 11 10 39 39 H 0.96698 * 114.00355 * 299.99977 * 13 12 11 40 40 H 1.08001 * 119.85789 * 180.27228 * 18 11 10 41 41 H 1.08994 * 110.57785 * 268.52877 * 22 21 20 42 42 H 1.09002 * 110.57300 * 145.64064 * 22 21 20 43 43 H 1.07998 * 120.05990 * 179.70760 * 24 8 7 44 44 H 1.07993 * 119.93743 * 180.25515 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7154 -2.2441 1.4880 7 6 3.1749 -2.8999 2.6120 8 6 3.4080 -2.1858 3.7859 9 6 3.9024 -2.8850 4.9969 10 6 3.2682 -4.0429 5.4437 11 6 3.7271 -4.6890 6.5736 12 6 3.0355 -5.9379 7.0566 13 8 1.6722 -5.6392 7.3631 14 14 3.8918 -6.5699 8.5857 15 1 3.8388 -5.5327 9.6472 16 1 3.2100 -7.8002 9.0621 17 1 5.3086 -6.8804 8.2672 18 6 4.8225 -4.1986 7.2613 19 6 5.4656 -3.0509 6.8247 20 6 5.0085 -2.3889 5.6898 21 8 5.8007 -1.3005 5.4692 22 6 6.4947 -1.0724 6.7101 23 8 6.5463 -2.3773 7.3169 24 6 3.1698 -0.8130 3.8190 25 6 2.7153 -0.1666 2.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7566 0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8901 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3643 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5341 -2.7967 0.5780 36 1 3.3536 -3.9647 2.5821 37 1 2.4149 -4.4321 4.9081 38 1 3.0744 -6.6992 6.2775 39 1 1.5615 -4.9678 8.0502 40 1 5.1784 -4.7123 8.1421 41 1 5.9367 -0.3789 7.3392 42 1 7.5007 -0.6969 6.5230 43 1 3.3442 -0.2555 4.7274 44 1 2.5343 0.8978 2.7109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12203822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:34 Heat of formation + Delta-G solvation = -79.125179 kcal Electronic energy + Delta-G solvation = -25501.151929 eV Core-core repulsion = 21893.999805 eV Total energy + Delta-G solvation = -3607.152123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.33807 -40.33738 -39.38433 -37.42750 -37.22104 -33.69747 -31.97275 -31.48342 -30.11130 -29.27273 -28.28647 -28.25349 -27.41612 -26.20751 -24.72373 -23.67549 -22.98937 -21.79642 -19.24338 -19.14082 -18.58305 -17.72944 -17.60073 -16.91834 -16.23552 -16.18051 -16.01559 -15.80999 -15.39897 -15.27833 -14.76935 -14.51834 -14.37378 -14.10878 -14.04828 -14.03297 -13.89467 -13.80952 -13.69433 -13.40588 -13.27730 -13.10629 -13.07337 -12.95530 -12.55421 -12.28395 -12.12091 -12.07738 -11.87871 -11.76111 -10.95642 -10.78806 -10.74758 -10.48093 -10.24528 -9.81685 -9.33376 -9.17709 -0.36847 -0.07490 0.47714 0.53840 1.14363 1.44067 1.51286 1.62886 1.85499 1.90059 2.03817 2.10176 2.30133 2.35822 2.68000 2.92983 3.15364 3.45095 3.60271 3.69972 3.79894 3.89067 3.98253 4.04718 4.11396 4.14457 4.26581 4.51289 4.57486 4.64666 4.72157 4.82290 4.85752 4.85994 4.89175 4.90325 4.90947 4.92181 4.97108 4.97631 5.13941 5.19435 5.24938 5.46156 5.57237 5.60471 5.61096 5.69298 5.71681 5.94102 6.12421 6.68498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.377 4.377 6 C -0.097 4.097 7 C -0.125 4.125 8 C -0.058 4.058 9 C -0.035 4.035 10 C -0.066 4.066 11 C -0.103 4.103 12 C -0.067 4.067 13 O -0.547 6.547 14 Si 0.973 3.027 15 H -0.254 1.254 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.112 4.112 19 C 0.024 3.976 20 C 0.035 3.965 21 O -0.317 6.317 22 C 0.203 3.797 23 O -0.323 6.323 24 C -0.122 4.122 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.390 0.610 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.159 0.841 43 H 0.114 0.886 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 1.240 -0.882 2.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.416 4.416 6 C -0.115 4.115 7 C -0.143 4.143 8 C -0.058 4.058 9 C -0.036 4.036 10 C -0.084 4.084 11 C -0.103 4.103 12 C -0.178 4.178 13 O -0.354 6.354 14 Si 0.798 3.202 15 H -0.178 1.178 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.131 4.131 19 C -0.020 4.020 20 C -0.010 4.010 21 O -0.234 6.234 22 C 0.093 3.907 23 O -0.239 6.239 24 C -0.141 4.141 25 C -0.116 4.116 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.240 0.760 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.176 0.824 43 H 0.132 0.868 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.765 0.549 -0.549 1.090 hybrid contribution 0.507 0.801 0.541 1.091 sum -0.258 1.350 -0.008 1.374 Atomic orbital electron populations 1.26265 1.21386 1.04561 1.04553 0.77187 0.65331 0.64541 0.61626 1.26294 1.06321 1.19565 1.04838 1.26265 1.06340 1.08575 1.15670 1.28075 1.02822 0.99682 1.11048 1.21352 0.96907 0.95088 0.98139 1.21505 0.99861 1.00363 0.92555 1.18744 1.00606 0.93782 0.92674 1.18059 0.92612 0.96774 0.96173 1.21027 0.99556 0.92217 0.95626 1.20097 0.95723 0.98665 0.95858 1.24915 0.86922 0.96107 1.09841 1.86503 1.22712 1.63775 1.62366 0.85342 0.78465 0.79903 0.76516 1.17766 1.19184 1.18441 1.20163 0.96149 0.95037 1.01725 1.19764 0.89742 0.97501 0.95020 1.19945 0.94447 0.90612 0.96010 1.87376 1.54854 1.45187 1.35940 1.26148 1.01230 0.84250 0.79089 1.87369 1.42445 1.27182 1.66934 1.21351 0.99990 0.93507 0.99211 1.21282 0.97280 1.00579 0.92468 0.91448 0.90636 0.91252 0.91461 0.90584 0.91010 0.90744 0.90608 0.91410 0.83881 0.85029 0.82576 0.84471 0.76050 0.84058 0.87676 0.82378 0.86833 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.55 8.65 113.37 0.98 2.53 16 2 Si 1.13 -5.77 12.31 68.60 0.84 -4.93 16 3 C -0.46 1.63 8.52 113.37 0.97 2.59 16 4 C -0.46 1.84 8.52 113.37 0.97 2.81 16 5 C -0.38 -0.19 4.60 22.31 0.10 -0.09 16 6 C -0.10 -0.14 9.28 22.24 0.21 0.07 16 7 C -0.12 -0.48 9.50 22.49 0.21 -0.27 16 8 C -0.06 -0.37 5.47 -20.05 -0.11 -0.48 16 9 C -0.04 -0.22 5.48 -19.98 -0.11 -0.33 16 10 C -0.07 -0.16 9.06 22.49 0.20 0.04 16 11 C -0.10 -0.11 5.38 -19.90 -0.11 -0.22 16 12 C -0.07 0.16 2.81 71.24 0.20 0.36 16 13 O -0.55 0.80 12.77 -148.98 -1.90 -1.10 16 14 Si 0.97 -1.54 25.06 68.60 1.72 0.18 16 15 H -0.25 0.26 7.11 99.48 0.71 0.97 16 16 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 17 H -0.26 -0.07 7.11 99.48 0.71 0.63 16 18 C -0.11 -0.40 8.67 22.38 0.19 -0.21 16 19 C 0.02 0.17 7.15 22.57 0.16 0.33 16 20 C 0.03 0.27 6.67 22.81 0.15 0.42 16 21 O -0.32 -2.31 11.17 -75.08 -0.84 -3.15 16 22 C 0.20 0.16 8.89 113.37 1.01 1.17 16 23 O -0.32 -2.12 11.41 -76.40 -0.87 -2.99 16 24 C -0.12 -0.72 9.33 22.49 0.21 -0.51 16 25 C -0.10 -0.26 9.28 22.24 0.21 -0.05 16 26 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 29 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 30 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.27 7.67 -2.39 -0.02 -0.29 16 32 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 33 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.14 -0.50 7.40 -2.91 -0.02 -0.52 16 36 H 0.13 0.10 8.04 -2.91 -0.02 0.08 16 37 H 0.16 -0.02 8.03 -2.91 -0.02 -0.04 16 38 H 0.14 -0.70 7.96 -2.39 -0.02 -0.72 16 39 H 0.39 -2.90 8.70 -74.06 -0.64 -3.54 16 40 H 0.14 0.16 4.85 -2.91 -0.01 0.14 16 41 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.16 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.11 0.61 8.05 -2.91 -0.02 0.59 16 44 H 0.14 -0.22 7.40 -2.91 -0.02 -0.24 16 Total: 0.00 -15.33 369.09 5.52 -9.81 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: 1.12 Total: -6.00 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.45 Total: 8.18 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -3.61 Total: -7.25 kcal Atomic # 14 Polarization: -7.31 SS G_CDS: 2.56 Total: -4.75 kcal Total: -15.33 5.52 -9.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12203822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.312 kcal (2) G-P(sol) polarization free energy of solvation -15.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds