Wall clock time and date at job start Mon Mar 8 2021 08:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35993 * 117.00111 * 2 1 4 4 C 1.38573 * 120.01424 * 0.02562 * 3 2 1 5 5 C 1.38382 * 120.24773 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.86198 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47131 * 119.99697 * 6 5 4 8 8 Si 1.86305 * 109.47185 * 0.02562 * 6 5 4 9 9 H 1.48499 * 109.47126 * 179.97438 * 8 6 5 10 10 H 1.48496 * 109.46885 * 299.99843 * 8 6 5 11 11 H 1.48499 * 109.46850 * 59.99646 * 8 6 5 12 12 C 1.37973 * 120.27827 * 0.27195 * 5 4 3 13 13 C 1.39412 * 120.02079 * 359.45757 * 12 5 4 14 14 C 1.48339 * 120.12300 * 180.24919 * 13 12 5 15 15 C 1.39362 * 120.12368 * 130.01051 * 14 13 12 16 16 C 1.38008 * 119.87332 * 179.74545 * 15 14 13 17 17 C 1.38320 * 120.12347 * 0.55840 * 16 15 14 18 18 Si 1.86807 * 119.87524 * 179.71853 * 17 16 15 19 19 C 1.86295 * 109.47232 * 269.97771 * 18 17 16 20 20 C 1.86296 * 109.47041 * 29.97926 * 18 17 16 21 21 C 1.86297 * 109.46925 * 149.97782 * 18 17 16 22 22 C 1.38322 * 120.25160 * 359.69922 * 17 16 15 23 23 C 1.38015 * 120.11985 * 0.02562 * 22 17 16 24 24 C 1.39035 * 120.01482 * 180.02562 * 3 2 1 25 25 O 1.35938 * 120.13811 * 0.02562 * 24 3 2 26 26 C 1.42902 * 116.99855 * 90.00057 * 25 24 3 27 27 H 1.09000 * 109.46972 * 60.00039 * 1 2 3 28 28 H 1.09009 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47331 * 299.99715 * 1 2 3 30 30 H 1.07997 * 119.87801 * 0.03889 * 4 3 2 31 31 H 1.08999 * 109.47358 * 240.00057 * 6 5 4 32 32 H 0.96700 * 114.00311 * 300.00591 * 7 6 5 33 33 H 1.07998 * 119.98717 * 179.72918 * 12 5 4 34 34 H 1.07998 * 120.06252 * 0.02817 * 15 14 13 35 35 H 1.08002 * 119.93761 * 180.30176 * 16 15 14 36 36 H 1.09006 * 109.47323 * 60.00215 * 19 18 17 37 37 H 1.08998 * 109.47022 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47368 * 300.00200 * 19 18 17 39 39 H 1.09008 * 109.47389 * 59.99843 * 20 18 17 40 40 H 1.08998 * 109.47214 * 179.97438 * 20 18 17 41 41 H 1.09004 * 109.47385 * 299.99997 * 20 18 17 42 42 H 1.09004 * 109.46943 * 60.00248 * 21 18 17 43 43 H 1.09000 * 109.47451 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47645 * 300.00057 * 21 18 17 45 45 H 1.08001 * 119.94356 * 179.97438 * 22 17 16 46 46 H 1.08005 * 120.05855 * 180.02562 * 23 22 17 47 47 H 1.09006 * 109.47203 * 300.00013 * 26 25 24 48 48 H 1.08999 * 109.47418 * 60.00034 * 26 25 24 49 49 H 1.09001 * 109.47249 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3741 0.0005 5 6 1.9152 3.6096 0.0000 6 6 1.0863 4.8681 0.0000 7 8 1.3873 5.6367 1.1665 8 14 -0.7222 4.4206 0.0016 9 1 -1.5390 5.6608 0.0022 10 1 -1.0354 3.6216 -1.2103 11 1 -1.0336 3.6227 1.2147 12 6 3.2923 3.6941 -0.0067 13 6 4.0625 2.5320 -0.0016 14 6 5.5432 2.6203 -0.0032 15 6 6.2883 1.8928 0.9230 16 6 7.6659 1.9747 0.9135 17 6 8.3067 2.7857 -0.0056 18 14 10.1715 2.8974 -0.0072 19 6 10.7119 4.2776 1.1212 20 6 10.8905 1.2870 0.5930 21 6 10.7716 3.2388 -1.7375 22 6 7.5721 3.5141 -0.9238 23 6 6.1942 3.4355 -0.9271 24 6 3.4348 1.2848 -0.0005 25 8 4.1782 0.1467 -0.0016 26 6 4.5324 -0.3956 -1.2754 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 0.2136 2.3155 0.0016 31 1 1.3152 5.4540 -0.8902 32 1 1.2076 5.1766 1.9979 33 1 3.7738 4.6608 -0.0115 34 1 5.7887 1.2627 1.6440 35 1 8.2445 1.4076 1.6277 36 1 10.3608 4.0779 2.1336 37 1 11.8000 4.3425 1.1206 38 1 10.2912 5.2199 0.7700 39 1 10.5743 0.4793 -0.0673 40 1 11.9785 1.3519 0.5916 41 1 10.5394 1.0871 1.6054 42 1 10.3508 4.1811 -2.0887 43 1 11.8597 3.3035 -1.7386 44 1 10.4554 2.4313 -2.3978 45 1 8.0776 4.1461 -1.6390 46 1 5.6216 4.0044 -1.6448 47 1 3.6269 -0.6367 -1.8322 48 1 5.1172 0.3366 -1.8322 49 1 5.1231 -1.3007 -1.1334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:52 Heat of formation + Delta-G solvation = -99.217160 kcal Electronic energy + Delta-G solvation = -28404.507252 eV Core-core repulsion = 24613.634777 eV Total energy + Delta-G solvation = -3790.872474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78517 -39.93879 -38.93257 -38.85228 -36.95636 -33.48279 -31.86324 -31.50625 -29.98246 -29.34799 -28.53047 -28.41734 -28.37913 -28.15804 -25.96825 -24.24719 -23.42753 -22.55149 -21.51791 -19.45560 -18.52288 -17.98556 -17.55891 -17.32477 -17.05641 -16.27838 -16.15335 -16.12864 -15.87378 -15.70081 -15.46395 -15.30467 -14.57868 -14.39177 -14.27875 -14.15964 -14.07533 -13.96212 -13.81289 -13.53888 -13.38430 -13.32411 -13.23398 -13.18291 -13.07218 -12.88127 -12.69396 -12.60702 -12.29373 -12.14952 -12.01817 -11.87658 -11.78205 -11.05842 -10.92773 -10.87379 -10.74003 -10.50563 -10.13132 -9.69259 -9.20193 -9.13772 -0.26587 0.19783 0.61393 0.66270 1.04246 1.32237 1.39686 1.75846 1.80828 1.88533 1.97843 2.16166 2.32690 2.58469 2.87830 3.07559 3.36167 3.48450 3.60183 3.92458 4.06553 4.10985 4.11796 4.16414 4.23233 4.32619 4.38745 4.45941 4.48312 4.50857 4.56450 4.63402 4.71047 4.73131 4.75075 4.77731 4.79014 4.79334 4.80083 4.81467 4.93769 5.06242 5.18855 5.26803 5.33641 5.42495 5.46843 5.53790 5.56908 5.65132 5.71354 5.75341 6.09000 6.21082 6.47586 6.64299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.120 3.880 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.079 4.079 7 O -0.535 6.535 8 Si 0.944 3.056 9 H -0.250 1.250 10 H -0.250 1.250 11 H -0.250 1.250 12 C -0.101 4.101 13 C -0.026 4.026 14 C -0.042 4.042 15 C -0.095 4.095 16 C -0.091 4.091 17 C -0.365 4.365 18 Si 1.058 2.942 19 C -0.449 4.449 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.091 4.091 23 C -0.115 4.115 24 C 0.080 3.920 25 O -0.318 6.318 26 C 0.037 3.963 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.378 0.622 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -0.254 -1.330 1.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.216 6.216 3 C 0.074 3.926 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.190 4.190 7 O -0.340 6.340 8 Si 0.766 3.234 9 H -0.173 1.173 10 H -0.174 1.174 11 H -0.174 1.174 12 C -0.119 4.119 13 C -0.026 4.026 14 C -0.042 4.042 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.406 4.406 18 Si 1.250 2.750 19 C -0.556 4.556 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.109 4.109 23 C -0.133 4.133 24 C 0.036 3.964 25 O -0.235 6.235 26 C -0.057 4.057 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.225 0.775 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.022 -0.340 -1.628 1.952 hybrid contribution -0.319 -0.225 0.125 0.410 sum -1.341 -0.566 -1.503 2.092 Atomic orbital electron populations 1.23186 0.78208 1.04633 1.01429 1.86191 1.21349 1.25719 1.88297 1.19184 0.91361 0.84807 0.97291 1.21052 0.99741 0.91873 1.09646 1.20025 0.94644 0.94122 0.99669 1.24966 1.08898 0.92790 0.92305 1.86529 1.89548 1.42676 1.15254 0.85774 0.75125 0.80772 0.81713 1.17320 1.17415 1.17398 1.20896 0.92195 0.97785 1.01051 1.18966 0.92808 0.91553 0.99308 1.18552 0.90292 0.98304 0.97041 1.21319 0.94055 0.97845 0.98073 1.21022 0.93982 0.97764 0.98106 1.27420 1.17072 0.98802 0.97356 0.78195 0.62137 0.67362 0.67318 1.26124 1.05642 1.13372 1.10505 1.26136 1.06852 1.16530 1.06192 1.26134 1.06167 1.05044 1.18338 1.20973 0.93387 0.98405 0.98150 1.21262 0.94948 0.98554 0.98496 1.17928 0.86140 0.86374 1.05998 1.86072 1.70044 1.38103 1.29246 1.22987 0.99728 0.98622 0.84341 0.92542 0.87559 0.92459 0.85246 0.86024 0.77514 0.84478 0.85817 0.86022 0.91156 0.91100 0.91168 0.91078 0.91019 0.91146 0.91183 0.91004 0.91097 0.86035 0.86207 0.93531 0.93612 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.98 16 2 O -0.30 -0.88 10.28 -34.29 -0.35 -1.23 16 3 C 0.12 0.37 6.69 -39.16 -0.26 0.11 16 4 C -0.20 -0.29 7.66 -39.40 -0.30 -0.59 16 5 C -0.08 -0.08 5.38 -104.67 -0.56 -0.64 16 6 C -0.08 0.04 2.81 36.00 0.10 0.14 16 7 O -0.54 -0.12 12.77 -35.23 -0.45 -0.57 16 8 Si 0.94 -0.70 25.06 -169.99 -4.26 -4.96 16 9 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 10 H -0.25 0.11 7.11 56.52 0.40 0.52 16 11 H -0.25 0.17 7.11 56.52 0.40 0.57 16 12 C -0.10 -0.17 9.06 -39.24 -0.36 -0.53 16 13 C -0.03 -0.07 5.48 -104.79 -0.57 -0.65 16 14 C -0.04 -0.11 5.27 -104.91 -0.55 -0.66 16 15 C -0.09 -0.24 8.78 -39.25 -0.34 -0.59 16 16 C -0.09 -0.11 9.28 -39.64 -0.37 -0.48 16 17 C -0.36 -0.11 4.60 -39.52 -0.18 -0.29 16 18 Si 1.06 -2.25 12.31 -169.99 -2.09 -4.34 16 19 C -0.45 0.49 8.65 101.05 0.87 1.37 16 20 C -0.45 0.63 8.52 101.05 0.86 1.49 16 21 C -0.45 0.70 8.52 101.05 0.86 1.56 16 22 C -0.09 -0.06 9.28 -39.63 -0.37 -0.43 16 23 C -0.11 -0.18 9.50 -39.25 -0.37 -0.56 16 24 C 0.08 0.29 5.65 -38.77 -0.22 0.07 16 25 O -0.32 -1.26 8.56 -34.12 -0.29 -1.55 16 26 C 0.04 0.06 11.13 101.05 1.12 1.18 16 27 H 0.06 -0.10 7.66 -51.93 -0.40 -0.49 16 28 H 0.11 -0.27 8.14 -51.92 -0.42 -0.69 16 29 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 30 H 0.13 -0.01 3.07 -52.49 -0.16 -0.17 16 31 H 0.12 -0.18 7.96 -51.93 -0.41 -0.60 16 32 H 0.38 -1.04 8.70 45.56 0.40 -0.65 16 33 H 0.14 0.13 8.03 -52.49 -0.42 -0.29 16 34 H 0.12 0.34 7.70 -52.49 -0.40 -0.06 16 35 H 0.12 -0.07 7.40 -52.49 -0.39 -0.46 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 42 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 45 H 0.12 -0.15 7.40 -52.49 -0.39 -0.54 16 46 H 0.12 0.04 8.04 -52.48 -0.42 -0.38 16 47 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 48 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 49 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 403.66 15.07 6.08 6.08 Total: 0.00 -6.05 403.66 -8.19 -14.24 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: -7.18 Total: -9.14 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.35 Total: 1.47 kcal Atomic # 8 Polarization: -2.26 SS G_CDS: -1.09 Total: -3.36 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: -6.35 Total: -9.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -6.05 -8.19 -14.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.978 kcal (2) G-P(sol) polarization free energy of solvation -6.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds