Wall clock time and date at job start Mon Mar 8 2021 08:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35993 * 117.00111 * 2 1 4 4 C 1.38573 * 120.01424 * 0.02562 * 3 2 1 5 5 C 1.38382 * 120.24773 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.86198 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47131 * 119.99697 * 6 5 4 8 8 Si 1.86305 * 109.47185 * 0.02562 * 6 5 4 9 9 H 1.48499 * 109.47126 * 179.97438 * 8 6 5 10 10 H 1.48496 * 109.46885 * 299.99843 * 8 6 5 11 11 H 1.48499 * 109.46850 * 59.99646 * 8 6 5 12 12 C 1.37973 * 120.27827 * 0.27195 * 5 4 3 13 13 C 1.39412 * 120.02079 * 359.45757 * 12 5 4 14 14 C 1.48339 * 120.12300 * 180.24919 * 13 12 5 15 15 C 1.39362 * 120.12368 * 130.01051 * 14 13 12 16 16 C 1.38008 * 119.87332 * 179.74545 * 15 14 13 17 17 C 1.38320 * 120.12347 * 0.55840 * 16 15 14 18 18 Si 1.86807 * 119.87524 * 179.71853 * 17 16 15 19 19 C 1.86295 * 109.47232 * 269.97771 * 18 17 16 20 20 C 1.86296 * 109.47041 * 29.97926 * 18 17 16 21 21 C 1.86297 * 109.46925 * 149.97782 * 18 17 16 22 22 C 1.38322 * 120.25160 * 359.69922 * 17 16 15 23 23 C 1.38015 * 120.11985 * 0.02562 * 22 17 16 24 24 C 1.39035 * 120.01482 * 180.02562 * 3 2 1 25 25 O 1.35938 * 120.13811 * 0.02562 * 24 3 2 26 26 C 1.42902 * 116.99855 * 90.00057 * 25 24 3 27 27 H 1.09000 * 109.46972 * 60.00039 * 1 2 3 28 28 H 1.09009 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47331 * 299.99715 * 1 2 3 30 30 H 1.07997 * 119.87801 * 0.03889 * 4 3 2 31 31 H 1.08999 * 109.47358 * 240.00057 * 6 5 4 32 32 H 0.96700 * 114.00311 * 300.00591 * 7 6 5 33 33 H 1.07998 * 119.98717 * 179.72918 * 12 5 4 34 34 H 1.07998 * 120.06252 * 0.02817 * 15 14 13 35 35 H 1.08002 * 119.93761 * 180.30176 * 16 15 14 36 36 H 1.09006 * 109.47323 * 60.00215 * 19 18 17 37 37 H 1.08998 * 109.47022 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47368 * 300.00200 * 19 18 17 39 39 H 1.09008 * 109.47389 * 59.99843 * 20 18 17 40 40 H 1.08998 * 109.47214 * 179.97438 * 20 18 17 41 41 H 1.09004 * 109.47385 * 299.99997 * 20 18 17 42 42 H 1.09004 * 109.46943 * 60.00248 * 21 18 17 43 43 H 1.09000 * 109.47451 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47645 * 300.00057 * 21 18 17 45 45 H 1.08001 * 119.94356 * 179.97438 * 22 17 16 46 46 H 1.08005 * 120.05855 * 180.02562 * 23 22 17 47 47 H 1.09006 * 109.47203 * 300.00013 * 26 25 24 48 48 H 1.08999 * 109.47418 * 60.00034 * 26 25 24 49 49 H 1.09001 * 109.47249 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3741 0.0005 5 6 1.9152 3.6096 0.0000 6 6 1.0863 4.8681 0.0000 7 8 1.3873 5.6367 1.1665 8 14 -0.7222 4.4206 0.0016 9 1 -1.5390 5.6608 0.0022 10 1 -1.0354 3.6216 -1.2103 11 1 -1.0336 3.6227 1.2147 12 6 3.2923 3.6941 -0.0067 13 6 4.0625 2.5320 -0.0016 14 6 5.5432 2.6203 -0.0032 15 6 6.2883 1.8928 0.9230 16 6 7.6659 1.9747 0.9135 17 6 8.3067 2.7857 -0.0056 18 14 10.1715 2.8974 -0.0072 19 6 10.7119 4.2776 1.1212 20 6 10.8905 1.2870 0.5930 21 6 10.7716 3.2388 -1.7375 22 6 7.5721 3.5141 -0.9238 23 6 6.1942 3.4355 -0.9271 24 6 3.4348 1.2848 -0.0005 25 8 4.1782 0.1467 -0.0016 26 6 4.5324 -0.3956 -1.2754 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 0.2136 2.3155 0.0016 31 1 1.3152 5.4540 -0.8902 32 1 1.2076 5.1766 1.9979 33 1 3.7738 4.6608 -0.0115 34 1 5.7887 1.2627 1.6440 35 1 8.2445 1.4076 1.6277 36 1 10.3608 4.0779 2.1336 37 1 11.8000 4.3425 1.1206 38 1 10.2912 5.2199 0.7700 39 1 10.5743 0.4793 -0.0673 40 1 11.9785 1.3519 0.5916 41 1 10.5394 1.0871 1.6054 42 1 10.3508 4.1811 -2.0887 43 1 11.8597 3.3035 -1.7386 44 1 10.4554 2.4313 -2.3978 45 1 8.0776 4.1461 -1.6390 46 1 5.6216 4.0044 -1.6448 47 1 3.6269 -0.6367 -1.8322 48 1 5.1172 0.3366 -1.8322 49 1 5.1231 -1.3007 -1.1334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:48:51 Heat of formation + Delta-G solvation = -90.253718 kcal Electronic energy + Delta-G solvation = -28404.118568 eV Core-core repulsion = 24613.634777 eV Total energy + Delta-G solvation = -3790.483790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89972 -40.01797 -39.03165 -38.94348 -37.00519 -33.56351 -31.93680 -31.58828 -30.02053 -29.26782 -28.49876 -28.31575 -28.25052 -28.23074 -26.03109 -24.32950 -23.50282 -22.64604 -21.59866 -19.54849 -18.62424 -18.08362 -17.60973 -17.37105 -17.15446 -16.33170 -16.22754 -16.13242 -15.93055 -15.76622 -15.55422 -15.33471 -14.58003 -14.46762 -14.31726 -14.04987 -14.03566 -13.91823 -13.71939 -13.55808 -13.37873 -13.33924 -13.10587 -13.09260 -12.94777 -12.83941 -12.75031 -12.65693 -12.25441 -12.18508 -12.05201 -11.91395 -11.79747 -11.11288 -10.92118 -10.75094 -10.73613 -10.50007 -10.19782 -9.78472 -9.32757 -9.23780 -0.37888 0.07249 0.52895 0.57119 1.09181 1.38656 1.44314 1.84548 1.86620 2.04995 2.06129 2.15387 2.23072 2.68981 2.75280 2.99428 3.39064 3.42193 3.58775 3.86412 4.04059 4.05601 4.14334 4.16649 4.23128 4.25969 4.33872 4.35403 4.39108 4.55510 4.60478 4.61392 4.68471 4.70409 4.83038 4.86375 4.86687 4.90157 4.91011 4.92009 4.92618 4.98408 5.08451 5.18478 5.24429 5.34684 5.54799 5.60488 5.61509 5.65577 5.69586 5.73037 6.00706 6.15160 6.49590 6.63496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.323 6.323 3 C 0.107 3.893 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.078 4.078 7 O -0.548 6.548 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.252 1.252 11 H -0.250 1.250 12 C -0.105 4.105 13 C -0.033 4.033 14 C -0.055 4.055 15 C -0.112 4.112 16 C -0.100 4.100 17 C -0.375 4.375 18 Si 1.126 2.874 19 C -0.463 4.463 20 C -0.463 4.463 21 C -0.460 4.460 22 C -0.098 4.098 23 C -0.125 4.125 24 C 0.060 3.940 25 O -0.334 6.334 26 C 0.037 3.963 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.389 0.611 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 0.249 -1.732 1.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.237 6.237 3 C 0.061 3.939 4 C -0.223 4.223 5 C -0.080 4.080 6 C -0.188 4.188 7 O -0.355 6.355 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.176 1.176 11 H -0.173 1.173 12 C -0.123 4.123 13 C -0.033 4.033 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.414 4.414 18 Si 1.313 2.687 19 C -0.569 4.569 20 C -0.570 4.570 21 C -0.567 4.567 22 C -0.116 4.116 23 C -0.142 4.142 24 C 0.015 3.985 25 O -0.251 6.251 26 C -0.057 4.057 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.779 0.153 -2.016 2.167 hybrid contribution -0.412 -0.381 0.265 0.621 sum -1.191 -0.228 -1.751 2.130 Atomic orbital electron populations 1.23457 0.76547 1.06078 1.02289 1.86158 1.23199 1.25920 1.88380 1.19341 0.91423 0.85425 0.97685 1.21211 1.00400 0.91506 1.09224 1.20200 0.94513 0.94624 0.98638 1.25067 1.08925 0.92219 0.92635 1.86500 1.89681 1.43272 1.16052 0.85388 0.74019 0.79662 0.81515 1.19215 1.17560 1.17343 1.21003 0.92587 0.97639 1.01119 1.19094 0.93157 0.91682 0.99376 1.18662 0.90355 0.98910 0.97579 1.21356 0.94862 0.98367 0.98398 1.21275 0.93596 0.98144 0.98735 1.28046 1.18898 0.97880 0.96553 0.77189 0.59376 0.65912 0.66231 1.26288 1.06037 1.13911 1.10672 1.26291 1.07275 1.17137 1.06290 1.26247 1.06533 1.05245 1.18688 1.21315 0.93193 0.98519 0.98532 1.21461 0.95659 0.98592 0.98532 1.18155 0.86643 0.86546 1.07140 1.86034 1.70296 1.38473 1.30312 1.23062 0.99837 0.99006 0.83790 0.91548 0.85958 0.91665 0.83825 0.84972 0.76165 0.83967 0.86996 0.84638 0.91555 0.90651 0.91316 0.91323 0.90630 0.91114 0.90783 0.90637 0.91256 0.83966 0.85340 0.93580 0.93752 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.20 10.28 -79.54 -0.82 -3.02 16 3 C 0.11 0.79 6.69 22.54 0.15 0.94 16 4 C -0.21 -0.66 7.66 22.38 0.17 -0.49 16 5 C -0.08 -0.17 5.38 -19.89 -0.11 -0.28 16 6 C -0.08 0.10 2.81 71.23 0.20 0.30 16 7 O -0.55 -0.12 12.77 -148.98 -1.90 -2.02 16 8 Si 0.97 -1.89 25.06 68.60 1.72 -0.17 16 9 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 10 H -0.25 0.43 7.11 99.48 0.71 1.13 16 11 H -0.25 0.52 7.11 99.48 0.71 1.23 16 12 C -0.11 -0.45 9.06 22.49 0.20 -0.24 16 13 C -0.03 -0.23 5.48 -19.97 -0.11 -0.34 16 14 C -0.06 -0.37 5.27 -20.05 -0.11 -0.48 16 15 C -0.11 -0.77 8.78 22.49 0.20 -0.58 16 16 C -0.10 -0.32 9.28 22.23 0.21 -0.11 16 17 C -0.37 -0.23 4.60 22.31 0.10 -0.13 16 18 Si 1.13 -5.56 12.31 68.60 0.84 -4.71 16 19 C -0.46 1.29 8.65 113.37 0.98 2.27 16 20 C -0.46 1.52 8.52 113.37 0.97 2.49 16 21 C -0.46 1.91 8.52 113.37 0.97 2.88 16 22 C -0.10 -0.13 9.28 22.24 0.21 0.07 16 23 C -0.12 -0.49 9.50 22.49 0.21 -0.28 16 24 C 0.06 0.54 5.65 22.80 0.13 0.67 16 25 O -0.33 -3.33 8.56 -78.92 -0.68 -4.00 16 26 C 0.04 0.17 11.13 113.37 1.26 1.44 16 27 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 28 H 0.12 -0.65 8.14 -2.38 -0.02 -0.67 16 29 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.14 -0.07 3.07 -2.91 -0.01 -0.08 16 31 H 0.13 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.39 -2.20 8.70 -74.06 -0.64 -2.84 16 33 H 0.14 0.38 8.03 -2.91 -0.02 0.35 16 34 H 0.11 0.93 7.70 -2.91 -0.02 0.91 16 35 H 0.14 -0.08 7.40 -2.91 -0.02 -0.10 16 36 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 37 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 38 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 39 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 40 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 42 H 0.07 -0.35 7.67 -2.38 -0.02 -0.37 16 43 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.14 -0.49 7.40 -2.91 -0.02 -0.51 16 46 H 0.13 0.16 8.04 -2.91 -0.02 0.13 16 47 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.04 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 Total: 0.00 -14.58 403.66 6.97 -7.61 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.05 Total: -2.90 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.75 Total: 9.22 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -3.40 Total: -9.05 kcal Atomic # 14 Polarization: -7.45 SS G_CDS: 2.56 Total: -4.88 kcal Total: -14.58 6.97 -7.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.646 kcal (2) G-P(sol) polarization free energy of solvation -14.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds