Wall clock time and date at job start Mon Mar 8 2021 08:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47430 * 2 1 4 4 C 1.35993 * 117.00111 * 179.97438 * 3 2 1 5 5 C 1.38573 * 120.01424 * 0.02562 * 4 3 2 6 6 C 1.38382 * 120.24773 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.86198 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 119.99697 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.37973 * 120.27827 * 0.27195 * 6 5 4 14 14 C 1.39412 * 120.02079 * 359.45757 * 13 6 5 15 15 C 1.48339 * 120.12300 * 180.24919 * 14 13 6 16 16 C 1.39362 * 120.12368 * 130.01051 * 15 14 13 17 17 C 1.38008 * 119.87332 * 179.74545 * 16 15 14 18 18 C 1.38320 * 120.12347 * 0.55840 * 17 16 15 19 19 Si 1.86807 * 119.87524 * 179.71853 * 18 17 16 20 20 C 1.86295 * 109.47232 * 269.97771 * 19 18 17 21 21 C 1.86296 * 109.47041 * 29.97926 * 19 18 17 22 22 C 1.86297 * 109.46925 * 149.97782 * 19 18 17 23 23 C 1.38322 * 120.25160 * 359.69922 * 18 17 16 24 24 C 1.38015 * 120.11985 * 0.02562 * 23 18 17 25 25 C 1.39035 * 120.01482 * 180.02562 * 4 3 2 26 26 O 1.35938 * 120.13811 * 0.02562 * 25 4 3 27 27 C 1.42902 * 116.99855 * 90.00057 * 26 25 4 28 28 H 1.08989 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46953 * 300.00871 * 1 2 3 30 30 H 1.09004 * 109.46536 * 59.99824 * 1 2 3 31 31 H 1.08991 * 109.47029 * 239.99612 * 2 1 3 32 32 H 1.09000 * 109.46612 * 119.99693 * 2 1 3 33 33 H 1.07997 * 119.87801 * 0.03889 * 5 4 3 34 34 H 1.08999 * 109.47358 * 240.00057 * 7 6 5 35 35 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 36 36 H 1.07998 * 119.98717 * 179.72918 * 13 6 5 37 37 H 1.07998 * 120.06252 * 0.02817 * 16 15 14 38 38 H 1.08002 * 119.93761 * 180.30176 * 17 16 15 39 39 H 1.09006 * 109.47323 * 60.00215 * 20 19 18 40 40 H 1.08998 * 109.47022 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47368 * 300.00200 * 20 19 18 42 42 H 1.09008 * 109.47389 * 59.99843 * 21 19 18 43 43 H 1.08998 * 109.47214 * 179.97438 * 21 19 18 44 44 H 1.09004 * 109.47385 * 299.99997 * 21 19 18 45 45 H 1.09004 * 109.46943 * 60.00248 * 22 19 18 46 46 H 1.09000 * 109.47451 * 180.02562 * 22 19 18 47 47 H 1.08999 * 109.47645 * 300.00057 * 22 19 18 48 48 H 1.08001 * 119.94356 * 179.97438 * 23 18 17 49 49 H 1.08005 * 120.05855 * 180.02562 * 24 23 18 50 50 H 1.09001 * 109.47249 * 180.02562 * 27 26 25 51 51 H 1.09006 * 109.47203 * 300.00013 * 27 26 25 52 52 H 1.08999 * 109.47418 * 60.00034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1991 0.4266 0.0005 6 6 5.5717 0.6023 0.0016 7 6 6.4818 -0.5988 0.0022 8 8 7.3073 -0.5715 -1.1640 9 14 5.4570 -2.1546 0.0004 10 1 6.3539 -3.3382 0.0003 11 1 4.5988 -2.1834 1.2119 12 1 4.6015 -2.1824 -1.2130 13 6 6.1104 1.8724 0.0084 14 6 5.2716 2.9859 0.0027 15 6 5.8485 4.3526 0.0044 16 6 5.4114 5.2973 -0.9222 17 6 5.9478 6.5689 -0.9126 18 6 6.9257 6.9028 0.0069 19 14 7.6527 8.6236 0.0085 20 6 9.1347 8.6728 -1.1193 21 6 6.3744 9.8383 -0.5924 22 6 8.1739 9.0758 1.7390 23 6 7.3672 5.9675 0.9254 24 6 6.8337 4.6947 0.9286 25 6 3.8865 2.8100 0.0011 26 8 3.0613 3.8903 0.0017 27 6 2.6676 4.4052 1.2752 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7844 -0.5706 -0.0006 34 1 7.1101 -0.5782 0.8926 35 1 6.8140 -0.5876 -1.9956 36 1 7.1824 2.0041 0.0136 37 1 4.6511 5.0363 -1.6434 38 1 5.6064 7.3033 -1.6271 39 1 8.8297 8.4083 -2.1318 40 1 9.5585 9.6770 -1.1186 41 1 9.8826 7.9621 -0.7677 42 1 5.5072 9.8096 0.0675 43 1 6.7984 10.8425 -0.5910 44 1 6.0693 9.5737 -1.6049 45 1 8.9219 8.3651 2.0905 46 1 8.5977 10.0801 1.7401 47 1 7.3069 9.0471 2.3989 48 1 8.1313 6.2335 1.6408 49 1 7.1788 3.9653 1.6465 50 1 2.0113 5.2638 1.1329 51 1 2.1381 3.6319 1.8319 52 1 3.5526 4.7125 1.8323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:38 Heat of formation + Delta-G solvation = -105.065462 kcal Electronic energy + Delta-G solvation = -30410.295315 eV Core-core repulsion = 26463.631621 eV Total energy + Delta-G solvation = -3946.663695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79118 -39.98334 -38.95823 -38.89404 -36.97369 -33.54174 -32.93209 -31.81701 -30.85182 -29.95454 -29.34398 -28.41798 -28.37782 -28.16046 -26.20174 -25.20445 -23.50648 -23.40749 -22.55081 -21.38248 -19.51248 -18.46286 -17.97855 -17.47895 -17.38202 -17.28848 -16.35782 -16.26363 -16.14298 -15.87225 -15.68706 -15.36606 -15.17529 -14.56167 -14.37577 -14.27299 -14.16013 -14.14537 -14.05479 -13.90093 -13.80839 -13.64352 -13.47129 -13.34052 -13.23680 -13.21005 -13.07089 -12.86538 -12.69015 -12.60769 -12.54394 -12.28333 -11.98371 -11.93998 -11.81397 -11.72011 -11.05302 -10.91763 -10.87196 -10.73354 -10.49899 -10.12384 -9.68896 -9.19068 -9.12304 -0.25853 0.20943 0.62054 0.66646 1.04666 1.32616 1.40125 1.76077 1.81192 1.88728 1.97478 2.08621 2.33479 2.58656 2.88558 3.08052 3.36659 3.48493 3.59878 3.86264 3.90485 3.99394 4.09971 4.16485 4.19114 4.23281 4.28052 4.39398 4.46448 4.50821 4.56784 4.61995 4.65354 4.71270 4.73317 4.75239 4.76636 4.77913 4.79208 4.79561 4.80262 4.81891 4.93677 5.05458 5.07719 5.20006 5.27398 5.34633 5.43624 5.47328 5.53954 5.57054 5.65941 5.71682 5.75892 6.13350 6.21580 6.48029 6.65904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.301 6.301 4 C 0.123 3.877 5 C -0.206 4.206 6 C -0.084 4.084 7 C -0.079 4.079 8 O -0.535 6.535 9 Si 0.942 3.058 10 H -0.249 1.249 11 H -0.250 1.250 12 H -0.250 1.250 13 C -0.102 4.102 14 C -0.026 4.026 15 C -0.042 4.042 16 C -0.095 4.095 17 C -0.091 4.091 18 C -0.365 4.365 19 Si 1.058 2.942 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.449 4.449 23 C -0.091 4.091 24 C -0.115 4.115 25 C 0.080 3.920 26 O -0.318 6.318 27 C 0.038 3.962 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.378 0.622 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.094 0.906 51 H 0.046 0.954 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -0.353 1.322 1.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.215 6.215 4 C 0.077 3.923 5 C -0.224 4.224 6 C -0.084 4.084 7 C -0.189 4.189 8 O -0.340 6.340 9 Si 0.765 3.235 10 H -0.173 1.173 11 H -0.174 1.174 12 H -0.174 1.174 13 C -0.120 4.120 14 C -0.026 4.026 15 C -0.042 4.042 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.407 4.407 19 Si 1.250 2.750 20 C -0.556 4.556 21 C -0.557 4.557 22 C -0.557 4.557 23 C -0.109 4.109 24 C -0.133 4.133 25 C 0.035 3.965 26 O -0.234 6.234 27 C -0.057 4.057 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.225 0.775 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.113 0.887 51 H 0.064 0.936 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.958 -0.927 1.619 2.097 hybrid contribution -0.257 -0.178 -0.124 0.336 sum -1.215 -1.105 1.495 2.221 Atomic orbital electron populations 1.21773 0.92086 1.03154 1.03861 1.22915 0.96544 0.81830 1.01432 1.86191 1.17850 1.29261 1.88189 1.19133 0.83074 0.92961 0.97128 1.21049 0.93686 0.97905 1.09773 1.20022 0.92845 0.95909 0.99647 1.24960 0.98897 1.02766 0.92311 1.86528 1.35189 1.97028 1.15257 0.85788 0.78787 0.77165 0.81749 1.17298 1.17398 1.17382 1.20889 1.00110 0.89852 1.01145 1.18964 0.90995 0.93354 0.99298 1.18553 0.96937 0.91654 0.97025 1.21318 0.98886 0.93014 0.98074 1.21020 0.95965 0.95784 0.98107 1.27418 1.01505 1.14375 0.97356 0.78192 0.66598 0.62896 0.67312 1.26124 1.14626 1.04395 1.10499 1.26136 1.12158 1.11220 1.06195 1.26135 1.05756 1.05450 1.18343 1.20973 0.98895 0.92902 0.98152 1.21261 0.96417 0.97082 0.98493 1.17926 0.88128 0.84363 1.06084 1.86073 1.64642 1.43498 1.29218 1.22981 0.99478 0.98822 0.84374 0.90096 0.91334 0.91203 0.91900 0.91977 0.85322 0.86025 0.77519 0.84494 0.85826 0.86030 0.91159 0.91101 0.91169 0.91080 0.91021 0.91149 0.91184 0.91006 0.91099 0.86040 0.86212 0.88748 0.93555 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 10.28 37.16 0.38 0.55 16 2 C 0.05 0.01 5.46 37.16 0.20 0.21 16 3 O -0.30 -0.95 9.92 -34.29 -0.34 -1.29 16 4 C 0.12 0.40 6.69 -39.16 -0.26 0.14 16 5 C -0.21 -0.33 7.66 -39.40 -0.30 -0.63 16 6 C -0.08 -0.09 5.38 -104.67 -0.56 -0.65 16 7 C -0.08 0.03 2.81 36.00 0.10 0.13 16 8 O -0.53 -0.17 12.77 -35.23 -0.45 -0.62 16 9 Si 0.94 -0.56 25.06 -169.99 -4.26 -4.82 16 10 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 11 H -0.25 0.08 7.11 56.52 0.40 0.48 16 12 H -0.25 0.13 7.11 56.52 0.40 0.53 16 13 C -0.10 -0.18 9.06 -39.24 -0.36 -0.54 16 14 C -0.03 -0.07 5.48 -104.79 -0.57 -0.65 16 15 C -0.04 -0.11 5.27 -104.91 -0.55 -0.66 16 16 C -0.09 -0.25 8.78 -39.25 -0.34 -0.59 16 17 C -0.09 -0.11 9.28 -39.64 -0.37 -0.48 16 18 C -0.36 -0.13 4.60 -39.52 -0.18 -0.31 16 19 Si 1.06 -2.22 12.31 -169.99 -2.09 -4.31 16 20 C -0.45 0.48 8.65 101.05 0.87 1.36 16 21 C -0.45 0.62 8.52 101.05 0.86 1.48 16 22 C -0.45 0.69 8.52 101.05 0.86 1.55 16 23 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 24 C -0.11 -0.19 9.50 -39.25 -0.37 -0.56 16 25 C 0.08 0.30 5.65 -38.77 -0.22 0.08 16 26 O -0.32 -1.28 8.56 -34.12 -0.29 -1.57 16 27 C 0.04 0.06 11.13 101.05 1.12 1.19 16 28 H 0.08 -0.22 8.14 -51.94 -0.42 -0.65 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 32 H 0.06 -0.05 7.66 -51.93 -0.40 -0.45 16 33 H 0.13 0.02 3.07 -52.49 -0.16 -0.14 16 34 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 35 H 0.38 -1.01 8.70 45.56 0.40 -0.61 16 36 H 0.14 0.15 8.03 -52.49 -0.42 -0.28 16 37 H 0.12 0.35 7.70 -52.49 -0.40 -0.05 16 38 H 0.12 -0.07 7.40 -52.49 -0.39 -0.46 16 39 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 42 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 45 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 46 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 47 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 48 H 0.12 -0.15 7.40 -52.49 -0.39 -0.54 16 49 H 0.12 0.05 8.04 -52.48 -0.42 -0.37 16 50 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 51 H 0.05 0.07 8.14 -51.93 -0.42 -0.35 16 52 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 LS Contribution 425.51 15.07 6.41 6.41 Total: 0.00 -5.85 425.51 -9.10 -14.94 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: -8.02 Total: -9.90 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.06 Total: 1.16 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: -1.08 Total: -3.48 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: -6.35 Total: -9.13 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -5.85 -9.10 -14.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.122 kcal (2) G-P(sol) polarization free energy of solvation -5.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds