Wall clock time and date at job start Mon Mar 8 2021 08:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47430 * 2 1 4 4 C 1.35993 * 117.00111 * 179.97438 * 3 2 1 5 5 C 1.38573 * 120.01424 * 0.02562 * 4 3 2 6 6 C 1.38382 * 120.24773 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.86198 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 119.99697 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.37973 * 120.27827 * 0.27195 * 6 5 4 14 14 C 1.39412 * 120.02079 * 359.45757 * 13 6 5 15 15 C 1.48339 * 120.12300 * 180.24919 * 14 13 6 16 16 C 1.39362 * 120.12368 * 130.01051 * 15 14 13 17 17 C 1.38008 * 119.87332 * 179.74545 * 16 15 14 18 18 C 1.38320 * 120.12347 * 0.55840 * 17 16 15 19 19 Si 1.86807 * 119.87524 * 179.71853 * 18 17 16 20 20 C 1.86295 * 109.47232 * 269.97771 * 19 18 17 21 21 C 1.86296 * 109.47041 * 29.97926 * 19 18 17 22 22 C 1.86297 * 109.46925 * 149.97782 * 19 18 17 23 23 C 1.38322 * 120.25160 * 359.69922 * 18 17 16 24 24 C 1.38015 * 120.11985 * 0.02562 * 23 18 17 25 25 C 1.39035 * 120.01482 * 180.02562 * 4 3 2 26 26 O 1.35938 * 120.13811 * 0.02562 * 25 4 3 27 27 C 1.42902 * 116.99855 * 90.00057 * 26 25 4 28 28 H 1.08989 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46953 * 300.00871 * 1 2 3 30 30 H 1.09004 * 109.46536 * 59.99824 * 1 2 3 31 31 H 1.08991 * 109.47029 * 239.99612 * 2 1 3 32 32 H 1.09000 * 109.46612 * 119.99693 * 2 1 3 33 33 H 1.07997 * 119.87801 * 0.03889 * 5 4 3 34 34 H 1.08999 * 109.47358 * 240.00057 * 7 6 5 35 35 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 36 36 H 1.07998 * 119.98717 * 179.72918 * 13 6 5 37 37 H 1.07998 * 120.06252 * 0.02817 * 16 15 14 38 38 H 1.08002 * 119.93761 * 180.30176 * 17 16 15 39 39 H 1.09006 * 109.47323 * 60.00215 * 20 19 18 40 40 H 1.08998 * 109.47022 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47368 * 300.00200 * 20 19 18 42 42 H 1.09008 * 109.47389 * 59.99843 * 21 19 18 43 43 H 1.08998 * 109.47214 * 179.97438 * 21 19 18 44 44 H 1.09004 * 109.47385 * 299.99997 * 21 19 18 45 45 H 1.09004 * 109.46943 * 60.00248 * 22 19 18 46 46 H 1.09000 * 109.47451 * 180.02562 * 22 19 18 47 47 H 1.08999 * 109.47645 * 300.00057 * 22 19 18 48 48 H 1.08001 * 119.94356 * 179.97438 * 23 18 17 49 49 H 1.08005 * 120.05855 * 180.02562 * 24 23 18 50 50 H 1.09001 * 109.47249 * 180.02562 * 27 26 25 51 51 H 1.09006 * 109.47203 * 300.00013 * 27 26 25 52 52 H 1.08999 * 109.47418 * 60.00034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1991 0.4266 0.0005 6 6 5.5717 0.6023 0.0016 7 6 6.4818 -0.5988 0.0022 8 8 7.3073 -0.5715 -1.1640 9 14 5.4570 -2.1546 0.0004 10 1 6.3539 -3.3382 0.0003 11 1 4.5988 -2.1834 1.2119 12 1 4.6015 -2.1824 -1.2130 13 6 6.1104 1.8724 0.0084 14 6 5.2716 2.9859 0.0027 15 6 5.8485 4.3526 0.0044 16 6 5.4114 5.2973 -0.9222 17 6 5.9478 6.5689 -0.9126 18 6 6.9257 6.9028 0.0069 19 14 7.6527 8.6236 0.0085 20 6 9.1347 8.6728 -1.1193 21 6 6.3744 9.8383 -0.5924 22 6 8.1739 9.0758 1.7390 23 6 7.3672 5.9675 0.9254 24 6 6.8337 4.6947 0.9286 25 6 3.8865 2.8100 0.0011 26 8 3.0613 3.8903 0.0017 27 6 2.6676 4.4052 1.2752 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7844 -0.5706 -0.0006 34 1 7.1101 -0.5782 0.8926 35 1 6.8140 -0.5876 -1.9956 36 1 7.1824 2.0041 0.0136 37 1 4.6511 5.0363 -1.6434 38 1 5.6064 7.3033 -1.6271 39 1 8.8297 8.4083 -2.1318 40 1 9.5585 9.6770 -1.1186 41 1 9.8826 7.9621 -0.7677 42 1 5.5072 9.8096 0.0675 43 1 6.7984 10.8425 -0.5910 44 1 6.0693 9.5737 -1.6049 45 1 8.9219 8.3651 2.0905 46 1 8.5977 10.0801 1.7401 47 1 7.3069 9.0471 2.3989 48 1 8.1313 6.2335 1.6408 49 1 7.1788 3.9653 1.6465 50 1 2.0113 5.2638 1.1329 51 1 2.1381 3.6319 1.8319 52 1 3.5526 4.7125 1.8323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:37 Heat of formation + Delta-G solvation = -94.986809 kcal Electronic energy + Delta-G solvation = -30409.858272 eV Core-core repulsion = 26463.631621 eV Total energy + Delta-G solvation = -3946.226652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.92090 -40.07644 -39.04508 -39.01782 -37.03148 -33.62148 -32.94313 -31.88824 -30.93375 -30.00475 -29.26663 -28.31893 -28.25140 -28.23861 -26.26994 -25.26050 -23.56934 -23.46326 -22.65503 -21.46970 -19.61679 -18.58152 -18.07870 -17.55300 -17.44107 -17.37359 -16.47262 -16.30587 -16.16406 -15.93664 -15.76017 -15.46074 -15.24732 -14.56591 -14.45805 -14.31660 -14.19564 -14.03781 -13.99431 -13.90699 -13.71521 -13.56757 -13.45132 -13.35220 -13.12685 -13.09453 -12.95080 -12.92714 -12.71741 -12.64061 -12.58724 -12.25342 -12.03230 -11.98132 -11.82496 -11.74916 -11.10689 -10.92093 -10.75138 -10.73668 -10.50319 -10.20063 -9.78563 -9.32546 -9.23814 -0.38198 0.07176 0.52712 0.57019 1.08509 1.37821 1.43680 1.83801 1.86489 1.98909 2.05108 2.11479 2.22737 2.68907 2.74942 2.99264 3.38384 3.40732 3.57527 3.85163 3.91149 3.98064 4.02775 4.06727 4.15954 4.20537 4.23118 4.32675 4.34710 4.38088 4.55298 4.60573 4.67784 4.69265 4.72730 4.82929 4.83220 4.86301 4.86630 4.90089 4.90931 4.91915 4.92560 4.98169 5.07662 5.15257 5.18425 5.24527 5.35354 5.54812 5.60405 5.61437 5.65509 5.69521 5.72969 6.02798 6.15078 6.49815 6.63053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.320 6.320 4 C 0.111 3.889 5 C -0.206 4.206 6 C -0.079 4.079 7 C -0.078 4.078 8 O -0.548 6.548 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.252 1.252 12 H -0.250 1.250 13 C -0.105 4.105 14 C -0.032 4.032 15 C -0.055 4.055 16 C -0.112 4.112 17 C -0.100 4.100 18 C -0.375 4.375 19 Si 1.126 2.874 20 C -0.463 4.463 21 C -0.463 4.463 22 C -0.460 4.460 23 C -0.098 4.098 24 C -0.124 4.124 25 C 0.060 3.940 26 O -0.334 6.334 27 C 0.037 3.963 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.389 0.611 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.143 0.857 49 H 0.129 0.871 50 H 0.107 0.893 51 H 0.045 0.955 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -0.337 1.740 1.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 O -0.234 6.234 4 C 0.064 3.936 5 C -0.225 4.225 6 C -0.079 4.079 7 C -0.188 4.188 8 O -0.355 6.355 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.176 1.176 12 H -0.174 1.174 13 C -0.124 4.124 14 C -0.032 4.032 15 C -0.055 4.055 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.414 4.414 19 Si 1.313 2.687 20 C -0.569 4.569 21 C -0.570 4.570 22 C -0.567 4.567 23 C -0.116 4.116 24 C -0.142 4.142 25 C 0.015 3.985 26 O -0.251 6.251 27 C -0.056 4.056 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.238 0.762 36 H 0.161 0.839 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.160 0.840 49 H 0.147 0.853 50 H 0.126 0.874 51 H 0.063 0.937 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.352 -0.923 2.024 2.252 hybrid contribution -0.446 -0.188 -0.270 0.554 sum -0.798 -1.111 1.754 2.224 Atomic orbital electron populations 1.21801 0.91226 1.04283 1.03327 1.23172 0.97309 0.80855 1.02293 1.86169 1.17916 1.31019 1.88300 1.19290 0.83432 0.93251 0.97595 1.21201 0.93775 0.98094 1.09396 1.20195 0.92898 0.96213 0.98601 1.25055 0.98927 1.02136 0.92669 1.86500 1.35947 1.96973 1.16045 0.85415 0.78008 0.75834 0.81520 1.19095 1.17584 1.17374 1.21000 1.00286 0.89920 1.01156 1.19093 0.90911 0.93912 0.99328 1.18660 0.97564 0.91695 0.97583 1.21353 0.99291 0.93936 0.98393 1.21274 0.96196 0.95544 0.98740 1.28047 1.00880 1.15895 0.96540 0.77183 0.64919 0.60346 0.66224 1.26288 1.15332 1.04626 1.10664 1.26292 1.12534 1.11880 1.06290 1.26247 1.05916 1.05858 1.18691 1.21316 0.99142 0.92573 0.98536 1.21459 0.96331 0.97904 0.98517 1.18145 0.88532 0.84597 1.07183 1.86035 1.64885 1.43862 1.30279 1.23053 0.99612 0.99164 0.83817 0.88098 0.91711 0.91871 0.91107 0.90967 0.84005 0.84930 0.76171 0.83932 0.87021 0.84647 0.91560 0.90650 0.91316 0.91329 0.90628 0.91120 0.90783 0.90635 0.91260 0.83961 0.85338 0.87431 0.93666 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 10.28 71.98 0.74 1.05 16 2 C 0.04 0.02 5.46 71.98 0.39 0.42 16 3 O -0.32 -2.42 9.92 -79.54 -0.79 -3.21 16 4 C 0.11 0.86 6.69 22.54 0.15 1.01 16 5 C -0.21 -0.76 7.66 22.38 0.17 -0.58 16 6 C -0.08 -0.19 5.38 -19.89 -0.11 -0.30 16 7 C -0.08 0.08 2.81 71.23 0.20 0.28 16 8 O -0.55 -0.19 12.77 -148.98 -1.90 -2.09 16 9 Si 0.97 -1.60 25.06 68.60 1.72 0.12 16 10 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 11 H -0.25 0.34 7.11 99.48 0.71 1.04 16 12 H -0.25 0.43 7.11 99.48 0.71 1.14 16 13 C -0.11 -0.46 9.06 22.49 0.20 -0.26 16 14 C -0.03 -0.23 5.48 -19.97 -0.11 -0.34 16 15 C -0.05 -0.38 5.27 -20.05 -0.11 -0.48 16 16 C -0.11 -0.78 8.78 22.49 0.20 -0.58 16 17 C -0.10 -0.33 9.28 22.23 0.21 -0.12 16 18 C -0.37 -0.25 4.60 22.31 0.10 -0.15 16 19 Si 1.13 -5.53 12.31 68.60 0.84 -4.68 16 20 C -0.46 1.28 8.65 113.37 0.98 2.26 16 21 C -0.46 1.51 8.52 113.37 0.97 2.47 16 22 C -0.46 1.90 8.52 113.37 0.97 2.86 16 23 C -0.10 -0.14 9.28 22.24 0.21 0.07 16 24 C -0.12 -0.50 9.50 22.49 0.21 -0.28 16 25 C 0.06 0.56 5.65 22.80 0.13 0.68 16 26 O -0.33 -3.38 8.56 -78.92 -0.68 -4.06 16 27 C 0.04 0.18 11.13 113.37 1.26 1.45 16 28 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.07 -0.09 7.66 -2.39 -0.02 -0.11 16 32 H 0.07 -0.12 7.66 -2.39 -0.02 -0.14 16 33 H 0.14 0.02 3.07 -2.91 -0.01 0.02 16 34 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.39 -2.14 8.70 -74.06 -0.64 -2.78 16 36 H 0.14 0.39 8.03 -2.91 -0.02 0.36 16 37 H 0.11 0.94 7.70 -2.91 -0.02 0.92 16 38 H 0.14 -0.07 7.40 -2.91 -0.02 -0.09 16 39 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 42 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 43 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 44 H 0.07 -0.23 7.67 -2.39 -0.02 -0.24 16 45 H 0.07 -0.35 7.67 -2.38 -0.02 -0.37 16 46 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 47 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 48 H 0.14 -0.49 7.40 -2.91 -0.02 -0.51 16 49 H 0.13 0.16 8.04 -2.91 -0.02 0.14 16 50 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.04 0.21 8.14 -2.38 -0.02 0.19 16 52 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 Total: 0.00 -14.18 425.51 6.98 -7.20 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: 1.01 Total: -2.73 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.77 Total: 9.46 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -3.37 Total: -9.36 kcal Atomic # 14 Polarization: -7.13 SS G_CDS: 2.56 Total: -4.57 kcal Total: -14.18 6.98 -7.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.789 kcal (2) G-P(sol) polarization free energy of solvation -14.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds