Wall clock time and date at job start Mon Mar 8 2021 08:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47219 * 2 1 4 4 C 1.35938 * 116.99855 * 180.02562 * 3 2 1 5 5 C 1.39626 * 120.13446 * 270.02594 * 4 3 2 6 6 C 1.48339 * 120.12372 * 0.02562 * 5 4 3 7 7 C 1.39362 * 120.12368 * 309.72215 * 6 5 4 8 8 C 1.38008 * 119.87332 * 179.74545 * 7 6 5 9 9 C 1.38320 * 120.12347 * 0.55840 * 8 7 6 10 10 Si 1.86807 * 119.87524 * 179.71853 * 9 8 7 11 11 C 1.86295 * 109.47232 * 269.97771 * 10 9 8 12 12 C 1.86296 * 109.47041 * 29.97926 * 10 9 8 13 13 C 1.86297 * 109.46925 * 149.97782 * 10 9 8 14 14 C 1.38322 * 120.25160 * 359.69922 * 9 8 7 15 15 C 1.38015 * 120.11985 * 0.02562 * 14 9 8 16 16 C 1.39412 * 119.75265 * 179.71319 * 5 4 3 17 17 C 1.37973 * 120.02079 * 0.53647 * 16 5 4 18 18 C 1.50696 * 119.85917 * 179.73403 * 17 16 5 19 19 O 1.42903 * 109.47131 * 299.72167 * 18 17 16 20 20 Si 1.86305 * 109.47185 * 179.72708 * 18 17 16 21 21 H 1.48499 * 109.47126 * 179.97438 * 20 18 17 22 22 H 1.48496 * 109.46885 * 299.99843 * 20 18 17 23 23 H 1.48499 * 109.46850 * 59.99646 * 20 18 17 24 24 C 1.38382 * 120.27827 * 359.45757 * 17 16 5 25 25 C 1.38573 * 120.24773 * 0.27195 * 24 17 16 26 26 O 1.35993 * 120.01424 * 180.02562 * 25 24 17 27 27 C 1.42897 * 117.00111 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46521 * 299.99398 * 1 2 3 30 30 H 1.08999 * 109.47231 * 59.99512 * 1 2 3 31 31 H 1.09006 * 109.46711 * 240.00094 * 2 1 3 32 32 H 1.08999 * 109.47231 * 120.00488 * 2 1 3 33 33 H 1.07998 * 120.06252 * 0.02817 * 7 6 5 34 34 H 1.08002 * 119.93761 * 180.30176 * 8 7 6 35 35 H 1.09006 * 109.47323 * 60.00215 * 11 10 9 36 36 H 1.08998 * 109.47022 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47368 * 300.00200 * 11 10 9 38 38 H 1.09008 * 109.47389 * 59.99843 * 12 10 9 39 39 H 1.08998 * 109.47214 * 179.97438 * 12 10 9 40 40 H 1.09004 * 109.47385 * 299.99997 * 12 10 9 41 41 H 1.09004 * 109.46943 * 60.00248 * 13 10 9 42 42 H 1.09000 * 109.47451 * 180.02562 * 13 10 9 43 43 H 1.08999 * 109.47645 * 300.00057 * 13 10 9 44 44 H 1.08001 * 119.94356 * 179.97438 * 14 9 8 45 45 H 1.08005 * 120.05855 * 180.02562 * 15 14 9 46 46 H 1.07998 * 119.99149 * 180.26485 * 16 5 4 47 47 H 1.08999 * 109.47358 * 59.72527 * 18 17 16 48 48 H 0.96700 * 114.00311 * 300.00591 * 19 18 17 49 49 H 1.07997 * 119.87426 * 180.25224 * 24 17 16 50 50 H 1.09009 * 109.47479 * 179.97438 * 27 26 25 51 51 H 1.08991 * 109.47331 * 299.99715 * 27 26 25 52 52 H 1.09000 * 109.46972 * 60.00039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3541 1.5253 -0.0005 5 6 4.0496 1.6164 1.2067 6 6 3.3207 1.5187 2.4950 7 6 2.1920 2.3042 2.7214 8 6 1.5148 2.2053 3.9198 9 6 1.9610 1.3370 4.8997 10 14 1.0435 1.2145 6.5223 11 6 1.7492 2.4457 7.7293 12 6 -0.7615 1.5819 6.2443 13 6 1.2280 -0.5065 7.2115 14 6 3.0838 0.5589 4.6826 15 6 3.7656 0.6455 3.4857 16 6 5.4324 1.7930 1.1969 17 6 6.1076 1.8883 -0.0026 18 6 7.6017 2.0852 -0.0089 19 8 7.9243 3.3043 0.6631 20 14 8.2099 2.1661 -1.7680 21 1 9.6821 2.3608 -1.7742 22 1 7.8746 0.8993 -2.4664 23 1 7.5577 3.3034 -2.4654 24 6 5.4195 1.7981 -1.1997 25 6 4.0456 1.6170 -1.2032 26 8 3.3741 1.5284 -2.3825 27 6 4.1485 1.6299 -3.5792 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8453 2.9856 1.9586 34 1 0.6371 2.8099 4.0944 35 1 1.6413 3.4527 7.3261 36 1 1.2136 2.3744 8.6759 37 1 2.8054 2.2307 7.8919 38 1 -1.1745 0.8615 5.5381 39 1 -1.2970 1.5099 7.1910 40 1 -0.8695 2.5888 5.8411 41 1 2.2842 -0.7214 7.3741 42 1 0.6923 -0.5782 8.1581 43 1 0.8152 -1.2269 6.5054 44 1 3.4281 -0.1170 5.4514 45 1 4.6420 0.0372 3.3171 46 1 5.9748 1.8597 2.1284 47 1 8.0804 1.2504 0.5030 48 1 7.5311 4.0911 0.2612 49 1 5.9551 1.8695 -2.1348 50 1 3.4922 1.5430 -4.4452 51 1 4.6559 2.5942 -3.6029 52 1 4.8880 0.8295 -3.6024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:56:31 Heat of formation + Delta-G solvation = -95.043449 kcal Electronic energy + Delta-G solvation = -30661.956286 eV Core-core repulsion = 26715.727178 eV Total energy + Delta-G solvation = -3946.229108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.90706 -40.02090 -39.14396 -38.94660 -37.05409 -33.68067 -32.71010 -31.85478 -31.02023 -29.99693 -29.25930 -28.49794 -28.27266 -28.25157 -26.41377 -24.41329 -23.97495 -23.42919 -22.63458 -21.60214 -19.59110 -18.71822 -18.12971 -17.61661 -17.37094 -17.02973 -16.39578 -16.21179 -16.12203 -15.95258 -15.80448 -15.72449 -15.25319 -14.81310 -14.55816 -14.31397 -14.05642 -14.03387 -13.95973 -13.72498 -13.62754 -13.47662 -13.37690 -13.27883 -13.12085 -13.09339 -12.96300 -12.94298 -12.82510 -12.52712 -12.47545 -12.24932 -12.17409 -12.02334 -11.91158 -11.79288 -11.01944 -10.89864 -10.74344 -10.73370 -10.49850 -10.19234 -9.78117 -9.31101 -9.23564 -0.37876 0.07155 0.53168 0.57421 1.08895 1.38306 1.44015 1.84189 1.86619 2.04910 2.05762 2.15439 2.20338 2.68952 2.70760 2.99471 3.38568 3.42254 3.58367 3.85173 3.98119 4.04641 4.10567 4.14104 4.15837 4.20202 4.22508 4.24893 4.34228 4.35673 4.55451 4.59164 4.60581 4.68780 4.81971 4.82859 4.86314 4.86624 4.90137 4.90913 4.91701 4.92560 4.92665 4.99123 5.09855 5.17501 5.18608 5.24650 5.35054 5.55430 5.60618 5.61539 5.66030 5.69496 5.73065 6.02724 6.15395 6.52612 6.63225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 O -0.331 6.331 4 C 0.061 3.939 5 C -0.033 4.033 6 C -0.054 4.054 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.374 4.374 10 Si 1.125 2.875 11 C -0.463 4.463 12 C -0.463 4.463 13 C -0.460 4.460 14 C -0.098 4.098 15 C -0.125 4.125 16 C -0.105 4.105 17 C -0.079 4.079 18 C -0.078 4.078 19 O -0.548 6.548 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.252 1.252 23 H -0.250 1.250 24 C -0.205 4.205 25 C 0.107 3.893 26 O -0.323 6.323 27 C 0.011 3.989 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.142 0.858 45 H 0.128 0.872 46 H 0.142 0.858 47 H 0.132 0.868 48 H 0.389 0.611 49 H 0.144 0.856 50 H 0.122 0.878 51 H 0.065 0.935 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -1.821 0.043 1.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.010 4.010 3 O -0.248 6.248 4 C 0.017 3.983 5 C -0.033 4.033 6 C -0.054 4.054 7 C -0.128 4.128 8 C -0.117 4.117 9 C -0.413 4.413 10 Si 1.312 2.688 11 C -0.569 4.569 12 C -0.570 4.570 13 C -0.567 4.567 14 C -0.115 4.115 15 C -0.143 4.143 16 C -0.124 4.124 17 C -0.080 4.080 18 C -0.188 4.188 19 O -0.355 6.355 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.176 1.176 23 H -0.174 1.174 24 C -0.224 4.224 25 C 0.061 3.939 26 O -0.236 6.236 27 C -0.084 4.084 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.160 0.840 45 H 0.146 0.854 46 H 0.160 0.840 47 H 0.150 0.850 48 H 0.238 0.762 49 H 0.162 0.838 50 H 0.140 0.860 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.474 -2.068 -0.557 2.193 hybrid contribution -0.035 0.320 -0.560 0.646 sum 0.439 -1.748 -1.117 2.120 Atomic orbital electron populations 1.21732 0.91846 1.03562 1.02984 1.22769 0.96571 0.81627 1.00082 1.86055 1.16749 1.27939 1.94070 1.18121 0.84030 1.06669 0.89495 1.19100 0.93339 0.99490 0.91409 1.18655 0.96058 0.98429 0.92296 1.21336 0.94730 0.99000 0.97784 1.21264 0.99359 0.98257 0.92838 1.28038 1.02277 0.97440 1.13578 0.77201 0.64415 0.66196 0.60967 1.26289 1.07015 1.11884 1.11724 1.26285 1.20340 1.05202 1.05127 1.26246 1.05017 1.18513 1.06928 1.21308 0.95066 0.98641 0.96530 1.21456 1.00468 0.98592 0.93760 1.20999 0.91661 1.00950 0.98742 1.20196 0.97052 0.98637 0.92118 1.25063 0.91768 0.90973 1.11028 1.86500 1.75310 1.16006 1.57681 0.85389 0.79596 0.81453 0.74154 1.19194 1.17570 1.17354 1.21209 0.92622 1.08990 0.99535 1.19347 0.90809 0.97723 0.86009 1.86161 1.37137 1.87523 1.12809 1.23452 0.98053 1.02206 0.84647 0.89006 0.91904 0.91969 0.93306 0.93388 0.87094 0.84677 0.91562 0.90650 0.91328 0.91291 0.90625 0.91121 0.90801 0.90633 0.91244 0.83996 0.85399 0.83994 0.84988 0.76173 0.83849 0.85986 0.91675 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.32 10.28 71.98 0.74 0.42 16 2 C 0.06 0.38 6.78 71.98 0.49 0.87 16 3 O -0.33 -3.38 8.20 -78.92 -0.65 -4.03 16 4 C 0.06 0.57 5.65 22.80 0.13 0.70 16 5 C -0.03 -0.24 5.48 -19.97 -0.11 -0.35 16 6 C -0.05 -0.38 5.27 -20.05 -0.11 -0.48 16 7 C -0.11 -0.78 8.78 22.49 0.20 -0.58 16 8 C -0.10 -0.32 9.28 22.23 0.21 -0.12 16 9 C -0.37 -0.25 4.60 22.31 0.10 -0.15 16 10 Si 1.12 -5.52 12.31 68.60 0.84 -4.67 16 11 C -0.46 1.27 8.65 113.37 0.98 2.25 16 12 C -0.46 1.55 8.52 113.37 0.97 2.51 16 13 C -0.46 1.90 8.52 113.37 0.97 2.86 16 14 C -0.10 -0.14 9.28 22.24 0.21 0.06 16 15 C -0.12 -0.51 9.50 22.49 0.21 -0.30 16 16 C -0.11 -0.47 9.06 22.49 0.20 -0.27 16 17 C -0.08 -0.19 5.38 -19.89 -0.11 -0.30 16 18 C -0.08 0.08 2.81 71.23 0.20 0.28 16 19 O -0.55 -0.20 12.77 -148.98 -1.90 -2.10 16 20 Si 0.97 -1.74 25.06 68.60 1.72 -0.02 16 21 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 22 H -0.25 0.38 7.11 99.48 0.71 1.09 16 23 H -0.25 0.48 7.11 99.48 0.71 1.19 16 24 C -0.21 -0.70 7.66 22.38 0.17 -0.53 16 25 C 0.11 0.81 6.69 22.54 0.15 0.96 16 26 O -0.32 -2.28 10.28 -79.54 -0.82 -3.10 16 27 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 28 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.11 0.95 7.70 -2.91 -0.02 0.93 16 34 H 0.14 -0.07 7.40 -2.91 -0.02 -0.10 16 35 H 0.07 -0.12 7.96 -2.38 -0.02 -0.13 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 38 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 39 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 41 H 0.07 -0.34 7.67 -2.38 -0.02 -0.36 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 44 H 0.14 -0.47 7.40 -2.91 -0.02 -0.49 16 45 H 0.13 0.19 8.04 -2.91 -0.02 0.17 16 46 H 0.14 0.41 8.03 -2.91 -0.02 0.38 16 47 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 48 H 0.39 -2.13 8.70 -74.06 -0.64 -2.78 16 49 H 0.14 -0.04 3.07 -2.91 -0.01 -0.05 16 50 H 0.12 -0.62 8.14 -2.38 -0.02 -0.64 16 51 H 0.06 -0.20 7.66 -2.39 -0.02 -0.22 16 52 H 0.07 -0.23 7.66 -2.39 -0.02 -0.25 16 Total: 0.00 -14.38 425.51 6.92 -7.46 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: 1.01 Total: -2.49 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.71 Total: 8.95 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -3.37 Total: -9.23 kcal Atomic # 14 Polarization: -7.25 SS G_CDS: 2.56 Total: -4.69 kcal Total: -14.38 6.92 -7.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.586 kcal (2) G-P(sol) polarization free energy of solvation -14.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds