Wall clock time and date at job start Mon Mar 8 2021 08:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47430 * 2 1 4 4 C 1.35993 * 117.00111 * 179.97438 * 3 2 1 5 5 C 1.38573 * 120.01424 * 0.02562 * 4 3 2 6 6 C 1.38382 * 120.24773 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.86198 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 119.99697 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.37973 * 120.27827 * 0.27195 * 6 5 4 14 14 C 1.39412 * 120.02079 * 359.45757 * 13 6 5 15 15 C 1.48339 * 120.12300 * 180.24919 * 14 13 6 16 16 C 1.39362 * 120.12368 * 130.01051 * 15 14 13 17 17 C 1.38008 * 119.87332 * 179.74545 * 16 15 14 18 18 C 1.38320 * 120.12347 * 0.55840 * 17 16 15 19 19 Si 1.86807 * 119.87524 * 179.71853 * 18 17 16 20 20 C 1.86295 * 109.47232 * 269.97771 * 19 18 17 21 21 C 1.86296 * 109.47041 * 29.97926 * 19 18 17 22 22 C 1.86297 * 109.46925 * 149.97782 * 19 18 17 23 23 C 1.38322 * 120.25160 * 359.69922 * 18 17 16 24 24 C 1.38015 * 120.11985 * 0.02562 * 23 18 17 25 25 C 1.39035 * 120.01482 * 180.02562 * 4 3 2 26 26 O 1.35938 * 120.13811 * 0.02562 * 25 4 3 27 27 C 1.42902 * 116.99855 * 90.00057 * 26 25 4 28 28 C 1.53003 * 109.47219 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.46536 * 59.99824 * 1 2 3 30 30 H 1.08989 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46953 * 300.00871 * 1 2 3 32 32 H 1.08991 * 109.47029 * 239.99612 * 2 1 3 33 33 H 1.09000 * 109.46612 * 119.99693 * 2 1 3 34 34 H 1.07997 * 119.87801 * 0.03889 * 5 4 3 35 35 H 1.08999 * 109.47358 * 240.00057 * 7 6 5 36 36 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 37 37 H 1.07998 * 119.98717 * 179.72918 * 13 6 5 38 38 H 1.07998 * 120.06252 * 0.02817 * 16 15 14 39 39 H 1.08002 * 119.93761 * 180.30176 * 17 16 15 40 40 H 1.09006 * 109.47323 * 60.00215 * 20 19 18 41 41 H 1.08998 * 109.47022 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.47368 * 300.00200 * 20 19 18 43 43 H 1.09008 * 109.47389 * 59.99843 * 21 19 18 44 44 H 1.08998 * 109.47214 * 179.97438 * 21 19 18 45 45 H 1.09004 * 109.47385 * 299.99997 * 21 19 18 46 46 H 1.09004 * 109.46943 * 60.00248 * 22 19 18 47 47 H 1.09000 * 109.47451 * 180.02562 * 22 19 18 48 48 H 1.08999 * 109.47645 * 300.00057 * 22 19 18 49 49 H 1.08001 * 119.94356 * 179.97438 * 23 18 17 50 50 H 1.08005 * 120.05855 * 180.02562 * 24 23 18 51 51 H 1.09006 * 109.47203 * 300.00013 * 27 26 25 52 52 H 1.08999 * 109.47418 * 60.00034 * 27 26 25 53 53 H 1.08999 * 109.47231 * 59.99512 * 28 27 26 54 54 H 1.08998 * 109.46948 * 180.02562 * 28 27 26 55 55 H 1.09004 * 109.46521 * 299.99398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1991 0.4266 0.0005 6 6 5.5717 0.6023 0.0016 7 6 6.4818 -0.5988 0.0022 8 8 7.3073 -0.5715 -1.1640 9 14 5.4570 -2.1546 0.0004 10 1 6.3539 -3.3382 0.0003 11 1 4.5988 -2.1834 1.2119 12 1 4.6015 -2.1824 -1.2130 13 6 6.1104 1.8724 0.0084 14 6 5.2716 2.9859 0.0027 15 6 5.8485 4.3526 0.0044 16 6 5.4114 5.2973 -0.9222 17 6 5.9478 6.5689 -0.9126 18 6 6.9257 6.9028 0.0069 19 14 7.6527 8.6236 0.0085 20 6 9.1347 8.6728 -1.1193 21 6 6.3744 9.8383 -0.5924 22 6 8.1739 9.0758 1.7390 23 6 7.3672 5.9675 0.9254 24 6 6.8337 4.6947 0.9286 25 6 3.8865 2.8100 0.0011 26 8 3.0613 3.8903 0.0017 27 6 2.6676 4.4052 1.2752 28 6 1.7463 5.6104 1.0754 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7844 -0.5706 -0.0006 35 1 7.1101 -0.5782 0.8926 36 1 6.8140 -0.5876 -1.9956 37 1 7.1824 2.0041 0.0136 38 1 4.6511 5.0363 -1.6434 39 1 5.6064 7.3033 -1.6271 40 1 8.8297 8.4083 -2.1318 41 1 9.5585 9.6770 -1.1186 42 1 9.8826 7.9621 -0.7677 43 1 5.5072 9.8096 0.0675 44 1 6.7984 10.8425 -0.5910 45 1 6.0693 9.5737 -1.6049 46 1 8.9219 8.3651 2.0905 47 1 8.5977 10.0801 1.7401 48 1 7.3069 9.0471 2.3989 49 1 8.1313 6.2335 1.6408 50 1 7.1788 3.9653 1.6465 51 1 2.1381 3.6319 1.8319 52 1 3.5526 4.7125 1.8323 53 1 0.8613 5.3028 0.5184 54 1 1.4464 6.0034 2.0468 55 1 2.2755 6.3838 0.5186 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419786.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:56:48 Heat of formation + Delta-G solvation = -99.774705 kcal Electronic energy + Delta-G solvation = -32750.279677 eV Core-core repulsion = 28648.307787 eV Total energy + Delta-G solvation = -4101.971889 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.187 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.92769 -40.08030 -39.15494 -39.02007 -37.08310 -33.69995 -33.19647 -32.25347 -31.85400 -30.53469 -29.99298 -29.25494 -28.27381 -28.25225 -26.65395 -25.27091 -24.12683 -23.47544 -23.43275 -22.64503 -21.47474 -19.65095 -18.68720 -18.11972 -17.56101 -17.44876 -17.30991 -16.39514 -16.28851 -16.18788 -15.93136 -15.75347 -15.73581 -15.26234 -14.69684 -14.55971 -14.31505 -14.18964 -14.03727 -14.01624 -13.93585 -13.71698 -13.57726 -13.51382 -13.45648 -13.32384 -13.15122 -13.09392 -12.96379 -12.94492 -12.86746 -12.62251 -12.52448 -12.42186 -12.25076 -11.99580 -11.97634 -11.82460 -11.74834 -11.01744 -10.89760 -10.74367 -10.73383 -10.50140 -10.19505 -9.78206 -9.30879 -9.23587 -0.38181 0.07090 0.52990 0.57323 1.08212 1.37457 1.43376 1.83428 1.86513 1.98840 2.05133 2.11218 2.20017 2.68890 2.70535 2.99306 3.37856 3.40792 3.57089 3.84058 3.90763 3.96557 3.98602 4.03832 4.12482 4.13774 4.19560 4.20953 4.22757 4.31728 4.35006 4.55241 4.58912 4.68157 4.71189 4.81485 4.82799 4.83258 4.86267 4.86609 4.90067 4.90803 4.91520 4.92319 4.92544 4.98855 5.08938 5.15000 5.16876 5.18524 5.24747 5.35747 5.55489 5.60544 5.61487 5.65956 5.69447 5.73017 6.04844 6.15326 6.52824 6.62761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.320 6.320 4 C 0.110 3.890 5 C -0.206 4.206 6 C -0.079 4.079 7 C -0.077 4.077 8 O -0.548 6.548 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.252 1.252 12 H -0.250 1.250 13 C -0.105 4.105 14 C -0.032 4.032 15 C -0.054 4.054 16 C -0.110 4.110 17 C -0.099 4.099 18 C -0.374 4.374 19 Si 1.125 2.875 20 C -0.463 4.463 21 C -0.463 4.463 22 C -0.460 4.460 23 C -0.098 4.098 24 C -0.125 4.125 25 C 0.062 3.938 26 O -0.330 6.330 27 C 0.064 3.936 28 C -0.144 4.144 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.389 0.611 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.142 0.858 50 H 0.128 0.872 51 H 0.048 0.952 52 H 0.048 0.952 53 H 0.061 0.939 54 H 0.091 0.909 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -0.051 1.833 1.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 O -0.234 6.234 4 C 0.064 3.936 5 C -0.225 4.225 6 C -0.079 4.079 7 C -0.188 4.188 8 O -0.355 6.355 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.176 1.176 12 H -0.174 1.174 13 C -0.124 4.124 14 C -0.033 4.033 15 C -0.054 4.054 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.413 4.413 19 Si 1.313 2.687 20 C -0.569 4.569 21 C -0.570 4.570 22 C -0.567 4.567 23 C -0.116 4.116 24 C -0.142 4.142 25 C 0.017 3.983 26 O -0.248 6.248 27 C -0.010 4.010 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.238 0.762 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.160 0.840 50 H 0.146 0.854 51 H 0.066 0.934 52 H 0.066 0.934 53 H 0.080 0.920 54 H 0.110 0.890 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.560 -0.632 2.118 2.280 hybrid contribution -0.389 -0.273 -0.326 0.576 sum -0.949 -0.905 1.792 2.221 Atomic orbital electron populations 1.21798 0.91227 1.04274 1.03310 1.23167 0.97309 0.80879 1.02264 1.86172 1.17924 1.30978 1.88296 1.19297 0.83426 0.93259 0.97604 1.21199 0.93779 0.98082 1.09424 1.20191 0.92893 0.96209 0.98644 1.25052 0.98922 1.02139 0.92661 1.86499 1.35945 1.96974 1.16041 0.85416 0.78009 0.75845 0.81512 1.19074 1.17598 1.17384 1.20996 1.00268 0.89928 1.01175 1.19100 0.90918 0.93916 0.99344 1.18653 0.97524 0.91693 0.97561 1.21333 0.99224 0.93929 0.98354 1.21263 0.96204 0.95521 0.98731 1.28040 1.00877 1.15872 0.96534 0.77194 0.64937 0.60373 0.66231 1.26290 1.15340 1.04621 1.10665 1.26286 1.12526 1.11859 1.06285 1.26246 1.05916 1.05852 1.18687 1.21309 0.99138 0.92564 0.98539 1.21454 0.96362 0.97908 0.98523 1.18113 0.88513 0.84572 1.07092 1.86055 1.64780 1.43702 1.30225 1.22760 0.97933 0.96441 0.83864 1.21729 0.98854 0.95947 1.03564 0.91882 0.88096 0.91731 0.91127 0.91002 0.84029 0.84944 0.76179 0.83960 0.87119 0.84684 0.91567 0.90649 0.91330 0.91297 0.90624 0.91128 0.90802 0.90631 0.91248 0.83992 0.85399 0.93405 0.93384 0.92008 0.89015 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 10.28 71.98 0.74 1.03 16 2 C 0.04 0.03 5.46 71.98 0.39 0.43 16 3 O -0.32 -2.50 9.92 -79.54 -0.79 -3.29 16 4 C 0.11 0.88 6.69 22.54 0.15 1.03 16 5 C -0.21 -0.80 7.66 22.38 0.17 -0.63 16 6 C -0.08 -0.21 5.38 -19.89 -0.11 -0.31 16 7 C -0.08 0.07 2.81 71.23 0.20 0.27 16 8 O -0.55 -0.27 12.77 -148.98 -1.90 -2.17 16 9 Si 0.97 -1.44 25.06 68.60 1.72 0.27 16 10 H -0.27 -0.36 7.11 99.48 0.71 0.34 16 11 H -0.25 0.29 7.11 99.48 0.71 1.00 16 12 H -0.25 0.39 7.11 99.48 0.71 1.10 16 13 C -0.11 -0.48 9.06 22.49 0.20 -0.28 16 14 C -0.03 -0.24 5.48 -19.97 -0.11 -0.35 16 15 C -0.05 -0.38 5.27 -20.05 -0.11 -0.49 16 16 C -0.11 -0.78 8.78 22.49 0.20 -0.59 16 17 C -0.10 -0.33 9.28 22.23 0.21 -0.12 16 18 C -0.37 -0.26 4.60 22.31 0.10 -0.16 16 19 Si 1.13 -5.49 12.31 68.60 0.84 -4.65 16 20 C -0.46 1.25 8.65 113.37 0.98 2.23 16 21 C -0.46 1.53 8.52 113.37 0.97 2.50 16 22 C -0.46 1.89 8.52 113.37 0.97 2.85 16 23 C -0.10 -0.15 9.28 22.24 0.21 0.06 16 24 C -0.12 -0.52 9.50 22.49 0.21 -0.31 16 25 C 0.06 0.59 5.65 22.80 0.13 0.72 16 26 O -0.33 -3.43 8.20 -78.92 -0.65 -4.08 16 27 C 0.06 0.40 6.78 71.98 0.49 0.88 16 28 C -0.14 -0.34 10.28 71.98 0.74 0.40 16 29 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 30 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 33 H 0.07 -0.11 7.66 -2.39 -0.02 -0.12 16 34 H 0.14 0.06 3.07 -2.91 -0.01 0.05 16 35 H 0.13 -0.43 7.96 -2.39 -0.02 -0.45 16 36 H 0.39 -2.07 8.70 -74.06 -0.64 -2.72 16 37 H 0.14 0.42 8.03 -2.91 -0.02 0.40 16 38 H 0.11 0.96 7.70 -2.91 -0.02 0.94 16 39 H 0.14 -0.07 7.40 -2.91 -0.02 -0.09 16 40 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 41 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 42 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 43 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 44 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 45 H 0.07 -0.23 7.67 -2.39 -0.02 -0.25 16 46 H 0.07 -0.34 7.67 -2.38 -0.02 -0.36 16 47 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 48 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 49 H 0.14 -0.47 7.40 -2.91 -0.02 -0.49 16 50 H 0.13 0.20 8.04 -2.91 -0.02 0.17 16 51 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 52 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 53 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 54 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 55 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 Total: 0.00 -13.99 447.37 6.93 -7.06 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: 0.97 Total: -2.31 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.73 Total: 9.16 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -3.34 Total: -9.53 kcal Atomic # 14 Polarization: -6.94 SS G_CDS: 2.56 Total: -4.38 kcal Total: -13.99 6.93 -7.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419786.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.715 kcal (2) G-P(sol) polarization free energy of solvation -13.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds