Wall clock time and date at job start Mon Mar 8 2021 09:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47418 * 2 1 4 4 O 1.42899 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.35864 * 117.00214 * 180.02562 * 4 3 2 6 6 C 1.38819 * 119.93555 * 0.24188 * 5 4 3 7 7 C 1.37924 * 120.06527 * 180.26079 * 6 5 4 8 8 C 1.39366 * 119.93257 * 359.49417 * 7 6 5 9 9 C 1.48367 * 120.06169 * 180.23595 * 8 7 6 10 10 C 1.39352 * 120.11637 * 179.72957 * 9 8 7 11 11 C 1.38022 * 119.87097 * 179.74133 * 10 9 8 12 12 C 1.38323 * 120.12016 * 0.50579 * 11 10 9 13 13 Si 1.86805 * 119.87356 * 179.74172 * 12 11 10 14 14 C 1.86297 * 109.47230 * 270.02116 * 13 12 11 15 15 C 1.86294 * 109.47033 * 30.02799 * 13 12 11 16 16 C 1.86307 * 109.46827 * 150.02124 * 13 12 11 17 17 C 1.38324 * 120.25208 * 359.76871 * 12 11 10 18 18 C 1.38018 * 120.11998 * 359.97239 * 17 12 11 19 19 C 1.39391 * 119.87014 * 0.25485 * 8 7 6 20 20 C 1.37887 * 119.93552 * 359.97438 * 19 8 7 21 21 C 1.50704 * 119.96389 * 179.97438 * 20 19 8 22 22 O 1.42901 * 109.47083 * 105.00475 * 21 20 19 23 23 Si 1.86297 * 109.47289 * 345.00127 * 21 20 19 24 24 H 1.48491 * 109.47292 * 60.00261 * 23 21 20 25 25 H 1.48504 * 109.47040 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46843 * 299.99866 * 23 21 20 27 27 H 1.08995 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46625 * 300.00493 * 1 2 3 29 29 H 1.09000 * 109.46874 * 59.99868 * 1 2 3 30 30 H 1.08993 * 109.47035 * 239.99907 * 2 1 3 31 31 H 1.09000 * 109.46874 * 120.00132 * 2 1 3 32 32 H 1.08999 * 109.47320 * 59.99554 * 3 2 1 33 33 H 1.09000 * 109.46758 * 300.00220 * 3 2 1 34 34 H 1.07998 * 119.96428 * 0.03012 * 6 5 4 35 35 H 1.08002 * 120.03543 * 179.77658 * 7 6 5 36 36 H 1.07998 * 120.06450 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.94189 * 180.22715 * 11 10 9 38 38 H 1.09001 * 109.47152 * 60.00238 * 14 13 12 39 39 H 1.09006 * 109.47210 * 180.02562 * 14 13 12 40 40 H 1.08998 * 109.47391 * 300.00264 * 14 13 12 41 41 H 1.08997 * 109.47554 * 59.99581 * 15 13 12 42 42 H 1.09002 * 109.47379 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46788 * 299.99419 * 15 13 12 44 44 H 1.08998 * 109.46926 * 60.00267 * 16 13 12 45 45 H 1.08998 * 109.47117 * 179.97438 * 16 13 12 46 46 H 1.08997 * 109.47262 * 300.00114 * 16 13 12 47 47 H 1.08000 * 119.94039 * 179.97438 * 17 12 11 48 48 H 1.07996 * 120.06327 * 180.02562 * 18 17 12 49 49 H 1.08006 * 120.03344 * 179.97438 * 19 8 7 50 50 H 1.09002 * 109.46784 * 224.99752 * 21 20 19 51 51 H 0.96696 * 114.00138 * 59.99720 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6530 -0.0001 6 6 3.3287 3.8164 0.0060 7 6 3.9521 5.0467 0.0010 8 6 5.3437 5.1211 0.0005 9 6 6.0173 6.4430 0.0005 10 6 7.4088 6.5188 0.0057 11 6 8.0302 7.7512 0.0003 12 6 7.2743 8.9097 0.0002 13 14 8.1225 10.5741 0.0001 14 6 8.4050 11.1272 1.7565 15 6 9.7593 10.4368 -0.8788 16 6 7.0488 11.8181 -0.8777 17 6 5.8928 8.8404 0.0008 18 6 5.2609 7.6134 0.0008 19 6 6.1015 3.9512 -0.0003 20 6 5.4726 2.7240 -0.0001 21 6 6.2913 1.4587 -0.0016 22 8 6.2586 0.8688 1.2995 23 14 8.0526 1.8591 -0.4580 24 1 8.6160 2.8119 0.5318 25 1 8.8591 0.6122 -0.4600 26 1 8.0864 2.4721 -1.8101 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2503 3.7580 0.0108 35 1 3.3624 5.9515 0.0021 36 1 7.9998 5.6149 0.0102 37 1 9.1085 7.8112 0.0006 38 1 9.0332 10.3993 2.2700 39 1 8.8996 12.0986 1.7564 40 1 7.4473 11.2075 2.2707 41 1 9.5940 10.1132 -1.9064 42 1 10.2545 11.4079 -0.8785 43 1 10.3875 9.7090 -0.3653 44 1 6.0910 11.8984 -0.3635 45 1 7.5434 12.7894 -0.8774 46 1 6.8834 11.4945 -1.9053 47 1 5.3076 9.7481 0.0011 48 1 4.1822 7.5604 0.0009 49 1 7.1802 4.0057 -0.0011 50 1 5.8776 0.7593 -0.7281 51 1 5.3710 0.6340 1.6028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:01:15 Heat of formation + Delta-G solvation = -83.140577 kcal Electronic energy + Delta-G solvation = -27201.999648 eV Core-core repulsion = 23574.968879 eV Total energy + Delta-G solvation = -3627.030768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.172 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57914 -40.07599 -38.58375 -37.36033 -35.03056 -33.13552 -32.78794 -31.73558 -29.74658 -29.16155 -28.44372 -28.39726 -27.65747 -26.69409 -24.28492 -23.82372 -23.00452 -21.80573 -21.39032 -19.43311 -18.26775 -17.89925 -17.40272 -17.22993 -16.66502 -16.00889 -15.72026 -15.51790 -15.30452 -15.19514 -15.06733 -14.72399 -14.40237 -14.24842 -14.18014 -14.12053 -13.87708 -13.82342 -13.72939 -13.50702 -13.33186 -13.25421 -13.16794 -13.14474 -13.09360 -12.80217 -12.57791 -12.42732 -12.15685 -12.09980 -11.88982 -11.72488 -11.65948 -11.08806 -11.03035 -10.95097 -10.89027 -10.78706 -10.12462 -9.94940 -9.76401 -8.63866 -0.27338 0.22113 0.59740 0.87879 1.26318 1.55936 1.59454 1.74066 1.86610 1.97675 2.02424 2.05367 2.56629 2.60649 3.16087 3.53101 3.64726 3.66457 3.77357 3.81570 3.95468 4.07093 4.08221 4.09994 4.15493 4.21342 4.29473 4.33810 4.46465 4.48577 4.56928 4.61060 4.69638 4.71130 4.72854 4.75696 4.76218 4.77320 4.77929 4.86415 4.93001 4.98360 5.02053 5.10571 5.15167 5.18467 5.22529 5.33183 5.43960 5.51788 5.52568 5.55182 5.67009 5.69523 5.80055 6.16065 6.31291 6.66979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.057 3.943 4 O -0.314 6.314 5 C 0.146 3.854 6 C -0.202 4.202 7 C -0.064 4.064 8 C -0.077 4.077 9 C -0.029 4.029 10 C -0.127 4.127 11 C -0.083 4.083 12 C -0.372 4.372 13 Si 1.059 2.941 14 C -0.450 4.450 15 C -0.450 4.450 16 C -0.449 4.449 17 C -0.084 4.084 18 C -0.124 4.124 19 C -0.074 4.074 20 C -0.142 4.142 21 C -0.081 4.081 22 O -0.537 6.537 23 Si 1.007 2.993 24 H -0.251 1.251 25 H -0.254 1.254 26 H -0.247 1.247 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.077 0.923 51 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 1.264 -0.955 3.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.228 6.228 5 C 0.100 3.900 6 C -0.221 4.221 7 C -0.082 4.082 8 C -0.077 4.077 9 C -0.029 4.029 10 C -0.145 4.145 11 C -0.101 4.101 12 C -0.413 4.413 13 Si 1.251 2.749 14 C -0.557 4.557 15 C -0.557 4.557 16 C -0.557 4.557 17 C -0.102 4.102 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.143 4.143 21 C -0.189 4.189 22 O -0.343 6.343 23 Si 0.827 3.173 24 H -0.175 1.175 25 H -0.177 1.177 26 H -0.170 1.170 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.095 0.905 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.201 1.273 -1.213 2.129 hybrid contribution -1.679 -0.196 0.192 1.702 sum -2.880 1.077 -1.021 3.240 Atomic orbital electron populations 1.21700 0.93986 1.02871 1.02296 1.21496 0.96267 0.94439 1.03921 1.22969 0.77799 0.99302 1.01700 1.86007 1.21805 1.26749 1.88199 1.18819 0.91279 0.84390 0.95475 1.21209 1.00255 0.92026 1.08585 1.21068 0.93525 0.97382 0.96224 1.18646 0.92948 0.91997 1.04131 1.18715 0.93160 0.91609 0.99459 1.21298 0.93690 0.98184 1.01319 1.21011 0.99758 0.92063 0.97286 1.27409 0.98892 1.12389 1.02648 0.78176 0.66218 0.63130 0.67408 1.26129 1.04923 1.05782 1.18835 1.26136 1.16722 1.04660 1.08219 1.26133 1.09798 1.11565 1.08193 1.21006 0.94728 0.97081 0.97383 1.21265 0.99561 0.92102 1.01309 1.21016 0.99931 0.90720 0.97511 1.19534 0.91136 0.96129 1.07541 1.25176 1.12208 0.92711 0.88839 1.86679 1.33724 1.82015 1.31869 0.84577 0.72456 0.80604 0.79658 1.17497 1.17741 1.17005 0.91464 0.92280 0.92299 0.90698 0.90637 0.91736 0.91795 0.84905 0.85059 0.86296 0.85952 0.91166 0.91081 0.91194 0.91055 0.90987 0.91172 0.91203 0.90989 0.91065 0.86007 0.86087 0.84949 0.90491 0.78340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 9.91 37.16 0.37 0.74 16 2 C -0.12 0.21 6.30 -26.73 -0.17 0.05 16 3 C 0.06 -0.06 4.74 37.16 0.18 0.11 16 4 O -0.31 -0.37 9.02 -19.31 -0.17 -0.54 16 5 C 0.15 0.30 6.62 -39.14 -0.26 0.04 16 6 C -0.20 -0.21 9.02 -39.48 -0.36 -0.56 16 7 C -0.06 -0.08 9.42 -39.28 -0.37 -0.45 16 8 C -0.08 -0.20 5.88 -104.88 -0.62 -0.81 16 9 C -0.03 -0.07 5.88 -104.90 -0.62 -0.69 16 10 C -0.13 -0.27 9.43 -39.25 -0.37 -0.64 16 11 C -0.08 -0.09 9.28 -39.63 -0.37 -0.45 16 12 C -0.37 -0.11 4.60 -39.52 -0.18 -0.29 16 13 Si 1.06 -2.31 12.31 -169.99 -2.09 -4.40 16 14 C -0.45 0.51 8.65 101.05 0.87 1.39 16 15 C -0.45 0.67 8.52 101.05 0.86 1.53 16 16 C -0.45 0.72 8.52 101.05 0.86 1.58 16 17 C -0.08 -0.06 9.28 -39.63 -0.37 -0.42 16 18 C -0.12 -0.18 9.43 -39.25 -0.37 -0.55 16 19 C -0.07 -0.20 8.03 -39.28 -0.32 -0.52 16 20 C -0.14 -0.37 5.27 -104.52 -0.55 -0.92 16 21 C -0.08 -0.16 2.33 36.01 0.08 -0.08 16 22 O -0.54 -1.49 12.65 -35.23 -0.45 -1.94 16 23 Si 1.01 1.61 25.74 -169.99 -4.38 -2.76 16 24 H -0.25 -0.48 6.73 56.52 0.38 -0.10 16 25 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 26 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 27 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.06 -0.16 8.14 -51.93 -0.42 -0.58 16 29 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.06 -0.12 7.64 -51.93 -0.40 -0.51 16 33 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 34 H 0.13 -0.14 6.28 -52.49 -0.33 -0.47 16 35 H 0.13 -0.10 6.20 -52.49 -0.33 -0.42 16 36 H 0.12 0.12 6.20 -52.49 -0.33 -0.20 16 37 H 0.12 -0.12 7.40 -52.49 -0.39 -0.51 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 44 H 0.07 -0.13 7.67 -51.93 -0.40 -0.52 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 46 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 47 H 0.12 -0.17 7.40 -52.49 -0.39 -0.56 16 48 H 0.12 -0.05 6.20 -52.49 -0.33 -0.37 16 49 H 0.13 0.24 3.02 -52.48 -0.16 0.08 16 50 H 0.08 0.09 7.82 -51.93 -0.41 -0.32 16 51 H 0.37 0.23 8.60 45.56 0.39 0.62 16 LS Contribution 408.01 15.07 6.15 6.15 Total: 0.00 -4.91 408.01 -10.30 -15.21 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -7.67 Total: -10.74 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.69 Total: -0.97 kcal Atomic # 8 Polarization: -1.86 SS G_CDS: -0.62 Total: -2.48 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -6.47 Total: -7.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -4.91 -10.30 -15.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.934 kcal (2) G-P(sol) polarization free energy of solvation -4.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds