Wall clock time and date at job start Mon Mar 8 2021 09:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47418 * 2 1 4 4 O 1.42899 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.35864 * 117.00214 * 180.02562 * 4 3 2 6 6 C 1.38819 * 119.93555 * 0.24188 * 5 4 3 7 7 C 1.37924 * 120.06527 * 180.26079 * 6 5 4 8 8 C 1.39366 * 119.93257 * 359.49417 * 7 6 5 9 9 C 1.48367 * 120.06169 * 180.23595 * 8 7 6 10 10 C 1.39352 * 120.11637 * 179.72957 * 9 8 7 11 11 C 1.38022 * 119.87097 * 179.74133 * 10 9 8 12 12 C 1.38323 * 120.12016 * 0.50579 * 11 10 9 13 13 Si 1.86805 * 119.87356 * 179.74172 * 12 11 10 14 14 C 1.86297 * 109.47230 * 270.02116 * 13 12 11 15 15 C 1.86294 * 109.47033 * 30.02799 * 13 12 11 16 16 C 1.86307 * 109.46827 * 150.02124 * 13 12 11 17 17 C 1.38324 * 120.25208 * 359.76871 * 12 11 10 18 18 C 1.38018 * 120.11998 * 359.97239 * 17 12 11 19 19 C 1.39391 * 119.87014 * 0.25485 * 8 7 6 20 20 C 1.37887 * 119.93552 * 359.97438 * 19 8 7 21 21 C 1.50704 * 119.96389 * 179.97438 * 20 19 8 22 22 O 1.42901 * 109.47083 * 105.00475 * 21 20 19 23 23 Si 1.86297 * 109.47289 * 345.00127 * 21 20 19 24 24 H 1.48491 * 109.47292 * 60.00261 * 23 21 20 25 25 H 1.48504 * 109.47040 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46843 * 299.99866 * 23 21 20 27 27 H 1.08995 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46625 * 300.00493 * 1 2 3 29 29 H 1.09000 * 109.46874 * 59.99868 * 1 2 3 30 30 H 1.08993 * 109.47035 * 239.99907 * 2 1 3 31 31 H 1.09000 * 109.46874 * 120.00132 * 2 1 3 32 32 H 1.08999 * 109.47320 * 59.99554 * 3 2 1 33 33 H 1.09000 * 109.46758 * 300.00220 * 3 2 1 34 34 H 1.07998 * 119.96428 * 0.03012 * 6 5 4 35 35 H 1.08002 * 120.03543 * 179.77658 * 7 6 5 36 36 H 1.07998 * 120.06450 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.94189 * 180.22715 * 11 10 9 38 38 H 1.09001 * 109.47152 * 60.00238 * 14 13 12 39 39 H 1.09006 * 109.47210 * 180.02562 * 14 13 12 40 40 H 1.08998 * 109.47391 * 300.00264 * 14 13 12 41 41 H 1.08997 * 109.47554 * 59.99581 * 15 13 12 42 42 H 1.09002 * 109.47379 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46788 * 299.99419 * 15 13 12 44 44 H 1.08998 * 109.46926 * 60.00267 * 16 13 12 45 45 H 1.08998 * 109.47117 * 179.97438 * 16 13 12 46 46 H 1.08997 * 109.47262 * 300.00114 * 16 13 12 47 47 H 1.08000 * 119.94039 * 179.97438 * 17 12 11 48 48 H 1.07996 * 120.06327 * 180.02562 * 18 17 12 49 49 H 1.08006 * 120.03344 * 179.97438 * 19 8 7 50 50 H 1.09002 * 109.46784 * 224.99752 * 21 20 19 51 51 H 0.96696 * 114.00138 * 59.99720 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6530 -0.0001 6 6 3.3287 3.8164 0.0060 7 6 3.9521 5.0467 0.0010 8 6 5.3437 5.1211 0.0005 9 6 6.0173 6.4430 0.0005 10 6 7.4088 6.5188 0.0057 11 6 8.0302 7.7512 0.0003 12 6 7.2743 8.9097 0.0002 13 14 8.1225 10.5741 0.0001 14 6 8.4050 11.1272 1.7565 15 6 9.7593 10.4368 -0.8788 16 6 7.0488 11.8181 -0.8777 17 6 5.8928 8.8404 0.0008 18 6 5.2609 7.6134 0.0008 19 6 6.1015 3.9512 -0.0003 20 6 5.4726 2.7240 -0.0001 21 6 6.2913 1.4587 -0.0016 22 8 6.2586 0.8688 1.2995 23 14 8.0526 1.8591 -0.4580 24 1 8.6160 2.8119 0.5318 25 1 8.8591 0.6122 -0.4600 26 1 8.0864 2.4721 -1.8101 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2503 3.7580 0.0108 35 1 3.3624 5.9515 0.0021 36 1 7.9998 5.6149 0.0102 37 1 9.1085 7.8112 0.0006 38 1 9.0332 10.3993 2.2700 39 1 8.8996 12.0986 1.7564 40 1 7.4473 11.2075 2.2707 41 1 9.5940 10.1132 -1.9064 42 1 10.2545 11.4079 -0.8785 43 1 10.3875 9.7090 -0.3653 44 1 6.0910 11.8984 -0.3635 45 1 7.5434 12.7894 -0.8774 46 1 6.8834 11.4945 -1.9053 47 1 5.3076 9.7481 0.0011 48 1 4.1822 7.5604 0.0009 49 1 7.1802 4.0057 -0.0011 50 1 5.8776 0.7593 -0.7281 51 1 5.3710 0.6340 1.6028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:01:14 Heat of formation + Delta-G solvation = -71.294343 kcal Electronic energy + Delta-G solvation = -27201.485957 eV Core-core repulsion = 23574.968879 eV Total energy + Delta-G solvation = -3626.517077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.172 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.64284 -40.10584 -38.63482 -37.50357 -34.92312 -33.20642 -32.84447 -31.77447 -29.68504 -29.12639 -28.29726 -28.26391 -27.57888 -26.79843 -24.31971 -23.87601 -22.96278 -21.79066 -21.46519 -19.48926 -18.38259 -17.95846 -17.37378 -17.28233 -16.72609 -16.08798 -15.78177 -15.54912 -15.34600 -15.18375 -15.09614 -14.71998 -14.44655 -14.25386 -14.17463 -14.05359 -13.79481 -13.73591 -13.65612 -13.47911 -13.25976 -13.10848 -13.10148 -13.00762 -12.96412 -12.81447 -12.59185 -12.38679 -12.27632 -12.00826 -11.97287 -11.77536 -11.61103 -11.19580 -11.09238 -10.93157 -10.76094 -10.74663 -10.16609 -10.04300 -9.82156 -8.71601 -0.35267 0.11627 0.54011 0.81464 1.11722 1.41282 1.43358 1.86210 1.86319 2.04054 2.05618 2.10219 2.53824 2.68133 3.09572 3.44984 3.58311 3.61811 3.86171 3.89489 3.91965 4.00901 4.06322 4.11050 4.19008 4.23940 4.26918 4.43428 4.51008 4.51369 4.58145 4.67560 4.75111 4.79930 4.84822 4.85196 4.89085 4.89515 4.90808 4.91551 4.97752 5.05517 5.10241 5.14854 5.15136 5.15366 5.26230 5.31402 5.45340 5.58920 5.60087 5.63851 5.68188 5.70581 5.73584 6.14096 6.28319 6.58574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.052 3.948 4 O -0.322 6.322 5 C 0.139 3.861 6 C -0.202 4.202 7 C -0.067 4.067 8 C -0.089 4.089 9 C -0.048 4.048 10 C -0.148 4.148 11 C -0.096 4.096 12 C -0.383 4.383 13 Si 1.126 2.874 14 C -0.463 4.463 15 C -0.463 4.463 16 C -0.460 4.460 17 C -0.094 4.094 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.156 4.156 21 C -0.082 4.082 22 O -0.550 6.550 23 Si 1.022 2.978 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.241 1.241 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.143 0.857 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.084 0.916 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 2.286 -1.104 4.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.022 4.022 4 O -0.236 6.236 5 C 0.093 3.907 6 C -0.221 4.221 7 C -0.085 4.085 8 C -0.090 4.090 9 C -0.048 4.048 10 C -0.166 4.166 11 C -0.114 4.114 12 C -0.423 4.423 13 Si 1.314 2.686 14 C -0.570 4.570 15 C -0.570 4.570 16 C -0.567 4.567 17 C -0.112 4.112 18 C -0.153 4.153 19 C -0.107 4.107 20 C -0.157 4.157 21 C -0.191 4.191 22 O -0.357 6.357 23 Si 0.843 3.157 24 H -0.184 1.184 25 H -0.190 1.190 26 H -0.164 1.164 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.161 0.839 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.102 0.898 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.133 2.278 -1.362 3.405 hybrid contribution -1.406 -0.514 0.257 1.519 sum -3.539 1.764 -1.105 4.106 Atomic orbital electron populations 1.21691 0.93255 1.03065 1.02651 1.21482 0.96803 0.94041 1.03548 1.23143 0.76708 0.99858 1.02492 1.86000 1.23023 1.26497 1.88107 1.18934 0.91266 0.85040 0.95498 1.21467 1.01319 0.91529 1.07746 1.21329 0.93229 0.98330 0.95621 1.18827 0.93683 0.92009 1.04446 1.18887 0.93488 0.92050 1.00358 1.21507 0.94027 0.98883 1.02135 1.21310 1.00794 0.92004 0.97248 1.28033 0.99141 1.13568 1.01511 0.77166 0.64751 0.60850 0.65876 1.26300 1.04822 1.06012 1.19831 1.26292 1.17558 1.04901 1.08275 1.26246 1.10278 1.11954 1.08233 1.21365 0.95218 0.97656 0.96934 1.21536 1.00462 0.92111 1.01176 1.21129 1.00189 0.91112 0.98251 1.19627 0.91742 0.96124 1.08187 1.25212 1.12376 0.92809 0.88661 1.86646 1.34568 1.82133 1.32358 0.84379 0.72030 0.79628 0.79654 1.18449 1.18971 1.16417 0.91372 0.91887 0.91969 0.91209 0.90907 0.90832 0.91025 0.82784 0.83166 0.86269 0.84442 0.91603 0.90659 0.91371 0.91308 0.90640 0.91085 0.90777 0.90657 0.91247 0.83930 0.84593 0.84939 0.89827 0.77466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.82 9.91 71.98 0.71 1.53 16 2 C -0.12 0.43 6.30 30.60 0.19 0.63 16 3 C 0.05 -0.14 4.74 71.98 0.34 0.20 16 4 O -0.32 -0.83 9.02 -92.02 -0.83 -1.66 16 5 C 0.14 0.62 6.62 22.56 0.15 0.77 16 6 C -0.20 -0.36 9.02 22.33 0.20 -0.15 16 7 C -0.07 -0.18 9.42 22.47 0.21 0.04 16 8 C -0.09 -0.55 5.88 -20.03 -0.12 -0.66 16 9 C -0.05 -0.29 5.88 -20.04 -0.12 -0.41 16 10 C -0.15 -0.84 9.43 22.49 0.21 -0.63 16 11 C -0.10 -0.26 9.28 22.24 0.21 -0.05 16 12 C -0.38 -0.18 4.60 22.31 0.10 -0.07 16 13 Si 1.13 -5.70 12.31 68.60 0.84 -4.86 16 14 C -0.46 1.30 8.65 113.37 0.98 2.28 16 15 C -0.46 1.60 8.52 113.37 0.97 2.57 16 16 C -0.46 1.97 8.52 113.37 0.97 2.94 16 17 C -0.09 -0.09 9.28 22.24 0.21 0.11 16 18 C -0.14 -0.41 9.43 22.49 0.21 -0.20 16 19 C -0.09 -0.62 8.03 22.46 0.18 -0.44 16 20 C -0.16 -0.99 5.27 -19.80 -0.10 -1.09 16 21 C -0.08 -0.43 2.33 71.24 0.17 -0.26 16 22 O -0.55 -3.69 12.65 -148.98 -1.89 -5.58 16 23 Si 1.02 4.69 25.74 68.60 1.77 6.46 16 24 H -0.26 -1.49 6.73 99.48 0.67 -0.82 16 25 H -0.27 -1.63 7.11 99.48 0.71 -0.93 16 26 H -0.24 -0.81 7.11 99.48 0.71 -0.10 16 27 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.06 -0.38 8.14 -2.38 -0.02 -0.40 16 29 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 -0.32 7.64 -2.39 -0.02 -0.34 16 33 H 0.07 -0.30 7.67 -2.39 -0.02 -0.31 16 34 H 0.15 -0.51 6.28 -2.91 -0.02 -0.53 16 35 H 0.15 -0.33 6.20 -2.91 -0.02 -0.35 16 36 H 0.12 0.50 6.20 -2.91 -0.02 0.49 16 37 H 0.14 -0.21 7.40 -2.91 -0.02 -0.24 16 38 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 39 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 40 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 41 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 42 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 43 H 0.07 -0.25 7.67 -2.39 -0.02 -0.27 16 44 H 0.07 -0.37 7.67 -2.39 -0.02 -0.38 16 45 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 47 H 0.14 -0.57 7.40 -2.91 -0.02 -0.59 16 48 H 0.14 -0.17 6.20 -2.91 -0.02 -0.19 16 49 H 0.13 0.75 3.02 -2.91 -0.01 0.74 16 50 H 0.08 0.27 7.82 -2.39 -0.02 0.25 16 51 H 0.38 0.88 8.60 -74.06 -0.64 0.24 16 Total: 0.00 -11.80 408.01 6.56 -5.23 By element: Atomic # 1 Polarization: -7.69 SS G_CDS: 1.00 Total: -6.69 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.67 Total: 7.09 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -2.72 Total: -7.23 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.61 Total: 1.60 kcal Total: -11.80 6.56 -5.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.061 kcal (2) G-P(sol) polarization free energy of solvation -11.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds